Wall clock time and date at job start Sun Mar 29 2020 22:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47603 * 2 1 4 4 C 1.50709 * 109.47033 * 119.99905 * 2 1 3 5 5 H 1.07993 * 120.00048 * 119.99922 * 4 2 1 6 6 C 1.37879 * 119.99554 * 300.00112 * 4 2 1 7 7 N 1.31511 * 120.00102 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99586 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47067 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47002 * 119.99665 * 8 6 4 11 11 H 1.48501 * 109.47076 * 239.99803 * 8 6 4 12 12 O 1.45205 * 109.47374 * 239.99649 * 2 1 3 13 13 C 1.34224 * 116.99651 * 89.99930 * 12 2 1 14 14 O 1.20819 * 120.00394 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99381 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.48182 * 274.97509 * 15 13 12 17 17 C 1.53097 * 109.48754 * 154.95156 * 15 13 12 18 18 C 1.53178 * 109.16320 * 182.40069 * 17 15 13 19 19 C 1.53207 * 109.03992 * 56.98185 * 18 17 15 20 20 C 1.53092 * 109.14859 * 303.02293 * 19 18 17 21 21 O 1.42898 * 109.48333 * 35.00313 * 15 13 12 22 22 H 1.08998 * 109.47124 * 300.00722 * 1 2 3 23 23 H 1.09003 * 109.46689 * 60.00240 * 1 2 3 24 24 H 1.08994 * 109.47097 * 180.02562 * 1 2 3 25 25 H 0.97004 * 119.99474 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47095 * 180.02562 * 16 15 13 27 27 H 1.08998 * 109.47590 * 300.02792 * 16 15 13 28 28 H 1.09003 * 109.46600 * 60.02851 * 16 15 13 29 29 H 1.09003 * 109.51867 * 302.30932 * 17 15 13 30 30 H 1.08997 * 109.52106 * 62.49332 * 17 15 13 31 31 H 1.09004 * 109.54044 * 176.84782 * 18 17 15 32 32 H 1.08996 * 109.54349 * 297.11136 * 18 17 15 33 33 H 1.08999 * 109.53319 * 183.11811 * 19 18 17 34 34 H 1.08992 * 109.51748 * 62.92028 * 19 18 17 35 35 H 1.09002 * 109.48343 * 297.61643 * 20 19 18 36 36 H 1.08999 * 109.47546 * 177.59237 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1873 4.8166 11 1 1.1658 -1.5865 4.8161 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0639 -2.2810 14 8 1.9982 1.2517 -2.2504 15 6 2.7183 -0.5775 -3.5494 16 6 4.2451 -0.6669 -3.5072 17 6 2.2895 0.2666 -4.7525 18 6 2.7505 -0.4228 -6.0403 19 6 2.1670 -1.8387 -6.0858 20 6 2.6007 -2.6011 -4.8311 21 8 2.1672 -1.8904 -3.6695 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7094 1.1619 3.4844 26 1 4.6075 -1.1304 -4.4248 27 1 4.6654 0.3347 -3.4155 28 1 4.5503 -1.2687 -2.6511 29 1 1.2039 0.3645 -4.7603 30 1 2.7447 1.2546 -4.6851 31 1 2.3999 0.1439 -6.9029 32 1 3.8391 -0.4764 -6.0556 33 1 2.5348 -2.3562 -6.9718 34 1 1.0790 -1.7832 -6.1205 35 1 3.6868 -2.6913 -4.8177 36 1 2.1533 -3.5951 -4.8370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838801023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:19 Heat of formation + Delta-G solvation = -146.253992 kcal Electronic energy + Delta-G solvation = -18423.631097 eV Core-core repulsion = 15486.630466 eV Total energy + Delta-G solvation = -2937.000631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41788 -38.69929 -35.74896 -33.70724 -33.18133 -32.31972 -29.48797 -28.19772 -25.29687 -24.64382 -24.06556 -21.64476 -19.99002 -19.03146 -17.49414 -16.63314 -16.14556 -15.80884 -15.07580 -14.95022 -14.55887 -14.30543 -13.99513 -13.17390 -12.99665 -12.71761 -12.42104 -12.21417 -12.02357 -11.76903 -11.33382 -11.17445 -11.09773 -11.06895 -10.93734 -10.75809 -10.40409 -10.30800 -10.24287 -9.54777 -9.44841 -9.40654 -8.84472 -8.45488 -6.14554 -4.20843 2.83895 3.26324 3.32448 3.37403 3.54509 3.93285 4.36310 4.67613 4.73255 4.84186 4.87614 5.02170 5.18456 5.30976 5.41675 5.48972 5.56079 5.68853 5.73921 5.81281 5.86347 6.00259 6.07947 6.12757 6.32633 6.69113 6.95479 6.97031 7.18546 7.21859 7.63848 7.77266 7.96122 8.18574 8.66804 8.93348 9.44314 10.93077 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.041969 B = 0.005901 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.993132 B = 4743.443949 C = 4951.020429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.211 3.789 3 H 0.046 0.954 4 C -0.517 4.517 5 H 0.070 0.930 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.338 6.338 13 C 0.473 3.527 14 O -0.515 6.515 15 C 0.126 3.874 16 C -0.177 4.177 17 C -0.132 4.132 18 C -0.121 4.121 19 C -0.158 4.158 20 C 0.055 3.945 21 O -0.353 6.353 22 H 0.099 0.901 23 H 0.015 0.985 24 H 0.038 0.962 25 H 0.265 0.735 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 -4.485 -15.528 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.159 3.841 3 H 0.063 0.937 4 C -0.556 4.556 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.253 6.253 13 C 0.315 3.685 14 O -0.405 6.405 15 C 0.085 3.915 16 C -0.234 4.234 17 C -0.170 4.170 18 C -0.159 4.159 19 C -0.196 4.196 20 C -0.022 4.022 21 O -0.272 6.272 22 H 0.117 0.883 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.035 -4.107 -15.167 16.223 hybrid contribution 0.315 -0.149 0.653 0.740 sum 4.350 -4.255 -14.514 15.738 Atomic orbital electron populations 1.22141 0.97488 1.00217 1.01277 1.20689 0.91548 0.93857 0.78048 0.93668 1.21073 1.32262 1.13370 0.88846 0.91227 1.24893 0.94976 0.95119 0.99058 1.69916 1.36265 1.22646 1.23994 0.86223 0.78627 0.79501 0.81809 1.19463 1.20790 1.20711 1.86568 1.74691 1.43085 1.20950 1.22720 0.74440 0.85616 0.85757 1.90615 1.48513 1.16577 1.84815 1.21233 0.94289 0.84553 0.91431 1.22397 0.93297 1.03958 1.03780 1.22020 1.02857 0.99379 0.92763 1.21650 1.00866 0.95890 0.97470 1.22235 1.02156 0.96535 0.98684 1.22655 0.99361 0.95548 0.84647 1.88168 1.69501 1.26038 1.43459 0.88284 0.96584 0.94319 0.92507 0.90671 0.90729 0.90363 0.90543 0.89604 0.91125 0.91383 0.90885 0.90908 0.92679 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.33 37.16 0.35 -3.73 16 2 C 0.21 5.91 2.56 -27.88 -0.07 5.84 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.98 8.90 -34.44 -0.31 -15.28 16 5 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.91 21.46 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 O -0.34 -8.64 9.62 -44.41 -0.43 -9.07 16 13 C 0.47 10.57 6.81 36.01 0.25 10.82 16 14 O -0.51 -12.51 15.37 -18.74 -0.29 -12.79 16 15 C 0.13 2.11 1.06 -91.72 -0.10 2.02 16 16 C -0.18 -2.45 7.92 37.16 0.29 -2.16 16 17 C -0.13 -1.85 4.41 -26.59 -0.12 -1.97 16 18 C -0.12 -1.23 5.72 -26.53 -0.15 -1.38 16 19 C -0.16 -1.54 6.14 -26.58 -0.16 -1.70 16 20 C 0.05 0.63 6.51 37.20 0.24 0.87 16 21 O -0.35 -5.93 10.02 -49.11 -0.49 -6.43 16 22 H 0.10 2.77 6.07 -51.93 -0.32 2.45 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.07 0.80 4.97 -51.93 -0.26 0.54 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.19 7.96 -51.93 -0.41 0.78 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.61 6.62 -51.93 -0.34 0.27 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.56 6.34 -51.93 -0.33 0.23 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -31.85 290.35 -6.48 -38.33 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.38 Total: -0.64 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 0.13 Total: -5.05 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.63 Total: -25.15 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.21 Total: -28.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.85 -6.48 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838801023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.927 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds