Wall clock time and date at job start Sun Mar 29 2020 22:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47603 * 2 1 4 4 C 1.50709 * 109.47033 * 119.99905 * 2 1 3 5 5 H 1.07993 * 120.00048 * 119.99922 * 4 2 1 6 6 C 1.37879 * 119.99554 * 300.00112 * 4 2 1 7 7 N 1.31511 * 120.00102 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99586 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47067 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47002 * 119.99665 * 8 6 4 11 11 H 1.48501 * 109.47076 * 239.99803 * 8 6 4 12 12 O 1.45205 * 109.47374 * 239.99649 * 2 1 3 13 13 C 1.34224 * 116.99651 * 89.99930 * 12 2 1 14 14 O 1.20819 * 120.00394 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99381 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.48182 * 274.97509 * 15 13 12 17 17 C 1.53097 * 109.48754 * 154.95156 * 15 13 12 18 18 C 1.53178 * 109.16320 * 182.40069 * 17 15 13 19 19 C 1.53207 * 109.03992 * 56.98185 * 18 17 15 20 20 C 1.53092 * 109.14859 * 303.02293 * 19 18 17 21 21 O 1.42898 * 109.48333 * 35.00313 * 15 13 12 22 22 H 1.08998 * 109.47124 * 300.00722 * 1 2 3 23 23 H 1.09003 * 109.46689 * 60.00240 * 1 2 3 24 24 H 1.08994 * 109.47097 * 180.02562 * 1 2 3 25 25 H 0.97004 * 119.99474 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47095 * 180.02562 * 16 15 13 27 27 H 1.08998 * 109.47590 * 300.02792 * 16 15 13 28 28 H 1.09003 * 109.46600 * 60.02851 * 16 15 13 29 29 H 1.09003 * 109.51867 * 302.30932 * 17 15 13 30 30 H 1.08997 * 109.52106 * 62.49332 * 17 15 13 31 31 H 1.09004 * 109.54044 * 176.84782 * 18 17 15 32 32 H 1.08996 * 109.54349 * 297.11136 * 18 17 15 33 33 H 1.08999 * 109.53319 * 183.11811 * 19 18 17 34 34 H 1.08992 * 109.51748 * 62.92028 * 19 18 17 35 35 H 1.09002 * 109.48343 * 297.61643 * 20 19 18 36 36 H 1.08999 * 109.47546 * 177.59237 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1873 4.8166 11 1 1.1658 -1.5865 4.8161 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0639 -2.2810 14 8 1.9982 1.2517 -2.2504 15 6 2.7183 -0.5775 -3.5494 16 6 4.2451 -0.6669 -3.5072 17 6 2.2895 0.2666 -4.7525 18 6 2.7505 -0.4228 -6.0403 19 6 2.1670 -1.8387 -6.0858 20 6 2.6007 -2.6011 -4.8311 21 8 2.1672 -1.8904 -3.6695 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7094 1.1619 3.4844 26 1 4.6075 -1.1304 -4.4248 27 1 4.6654 0.3347 -3.4155 28 1 4.5503 -1.2687 -2.6511 29 1 1.2039 0.3645 -4.7603 30 1 2.7447 1.2546 -4.6851 31 1 2.3999 0.1439 -6.9029 32 1 3.8391 -0.4764 -6.0556 33 1 2.5348 -2.3562 -6.9718 34 1 1.0790 -1.7832 -6.1205 35 1 3.6868 -2.6913 -4.8177 36 1 2.1533 -3.5951 -4.8370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838801023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:18 Heat of formation + Delta-G solvation = -165.931508 kcal Electronic energy + Delta-G solvation = -18424.484378 eV Core-core repulsion = 15486.630466 eV Total energy + Delta-G solvation = -2937.853912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90634 -40.21374 -37.69884 -35.37955 -34.67442 -33.48247 -31.62648 -29.23558 -27.50333 -26.04231 -25.07774 -23.34209 -21.69894 -20.18169 -19.21764 -18.59565 -17.76220 -17.35012 -16.78937 -16.34722 -15.92379 -15.67278 -15.27120 -14.80019 -14.34411 -14.07610 -13.83911 -13.62863 -13.48370 -13.25386 -13.18477 -12.99151 -12.84123 -12.42990 -12.36690 -12.16191 -12.06274 -11.88695 -11.62963 -11.50416 -11.08130 -10.96901 -10.62277 -10.46211 -8.30642 -6.47843 1.11357 1.40606 1.42197 1.55969 1.89602 2.38421 2.71744 2.99681 3.52872 3.70954 3.80163 3.94505 4.03705 4.18156 4.43062 4.45228 4.46778 4.54813 4.73369 4.74451 4.78996 4.81058 4.89610 4.97435 5.04684 5.09584 5.12211 5.21426 5.41369 5.45210 5.57664 5.84720 6.01523 6.13837 6.56422 6.89227 7.23745 8.77725 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.041969 B = 0.005901 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.993132 B = 4743.443949 C = 4951.020429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.212 3.788 3 H 0.008 0.992 4 C -0.548 4.548 5 H 0.065 0.935 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.986 3.014 9 H -0.264 1.264 10 H -0.273 1.273 11 H -0.270 1.270 12 O -0.351 6.351 13 C 0.460 3.540 14 O -0.543 6.543 15 C 0.131 3.869 16 C -0.173 4.173 17 C -0.131 4.131 18 C -0.115 4.115 19 C -0.154 4.154 20 C 0.043 3.957 21 O -0.387 6.387 22 H 0.084 0.916 23 H 0.020 0.980 24 H 0.043 0.957 25 H 0.272 0.728 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -5.926 -16.808 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.585 4.585 5 H 0.084 0.916 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.809 3.191 9 H -0.188 1.188 10 H -0.198 1.198 11 H -0.195 1.195 12 O -0.267 6.267 13 C 0.304 3.696 14 O -0.434 6.434 15 C 0.090 3.910 16 C -0.230 4.230 17 C -0.168 4.168 18 C -0.152 4.152 19 C -0.191 4.191 20 C -0.032 4.032 21 O -0.308 6.308 22 H 0.102 0.898 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.257 -5.551 -16.481 18.168 hybrid contribution -0.090 0.321 0.986 1.041 sum 5.167 -5.229 -15.495 17.151 Atomic orbital electron populations 1.21968 0.96839 1.00282 1.00721 1.20424 0.92088 0.92127 0.79439 0.97400 1.21297 1.33465 1.13847 0.89907 0.91637 1.25872 0.94639 0.95671 1.02183 1.70025 1.36589 1.23669 1.25255 0.85091 0.78399 0.78394 0.77237 1.18794 1.19827 1.19511 1.86570 1.75232 1.43493 1.21359 1.24104 0.73347 0.85660 0.86531 1.90578 1.49616 1.17927 1.85321 1.21290 0.95712 0.85230 0.88771 1.22428 0.90916 1.04346 1.05290 1.22054 1.01727 0.99325 0.93740 1.21688 1.02127 0.95886 0.95461 1.22233 1.01671 0.96270 0.98966 1.23043 1.00769 0.95775 0.83656 1.88108 1.70356 1.25987 1.46305 0.89767 0.96084 0.93768 0.91890 0.86532 0.90479 0.91818 0.92488 0.89958 0.89116 0.89304 0.87414 0.91951 0.90723 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.74 9.33 71.98 0.67 -7.07 16 2 C 0.21 12.43 2.56 29.85 0.08 12.51 16 3 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 4 C -0.55 -32.53 8.90 25.60 0.23 -32.30 16 5 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -54.00 11.32 21.45 0.24 -53.75 16 8 Si 0.99 43.89 29.54 68.60 2.03 45.91 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 O -0.35 -18.69 9.62 -46.41 -0.45 -19.14 16 13 C 0.46 21.31 6.81 71.24 0.48 21.80 16 14 O -0.54 -27.64 15.37 21.99 0.34 -27.31 16 15 C 0.13 4.34 1.06 -11.51 -0.01 4.33 16 16 C -0.17 -4.52 7.92 71.98 0.57 -3.95 16 17 C -0.13 -3.53 4.41 30.69 0.14 -3.39 16 18 C -0.11 -1.92 5.72 30.72 0.18 -1.74 16 19 C -0.15 -2.45 6.14 30.69 0.19 -2.26 16 20 C 0.04 0.87 6.51 72.01 0.47 1.34 16 21 O -0.39 -12.76 10.02 -135.71 -1.36 -14.12 16 22 H 0.08 4.88 6.07 -2.39 -0.01 4.86 16 23 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.12 2.04 4.97 -2.39 -0.01 2.03 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.24 7.96 -2.39 -0.02 2.22 16 31 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.09 1.16 6.62 -2.39 -0.02 1.14 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.22 6.34 -2.39 -0.02 1.20 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -71.68 290.35 5.29 -66.38 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.06 Total: 11.41 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 3.44 Total: -9.39 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.24 Total: -53.75 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -1.47 Total: -60.56 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.68 5.29 -66.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838801023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.549 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds