Wall clock time and date at job start Sun Mar 29 2020 22:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46958 * 2 1 4 4 C 1.42899 * 114.00178 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55152 * 4.32410 * 4 3 2 6 6 C 1.53072 * 117.51382 * 218.60851 * 4 3 2 7 7 C 1.52994 * 59.98387 * 252.52091 * 6 4 3 8 8 H 1.09001 * 117.50451 * 107.50307 * 7 6 4 9 9 C 1.50704 * 117.49626 * 252.50095 * 7 6 4 10 10 O 1.20820 * 120.00313 * 68.74672 * 9 7 6 11 11 O 1.34230 * 119.99832 * 248.74200 * 9 7 6 12 12 C 1.45203 * 117.00158 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47112 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46737 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99501 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00481 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 359.72901 * 17 15 14 20 20 H 1.48502 * 109.46964 * 270.27509 * 19 17 15 21 21 H 1.48505 * 109.47036 * 30.26897 * 19 17 15 22 22 H 1.48490 * 109.47395 * 150.27411 * 19 17 15 23 23 H 1.09004 * 109.46834 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.47226 * 299.99744 * 1 2 3 25 25 H 1.08991 * 109.47639 * 59.99944 * 1 2 3 26 26 H 1.08996 * 109.47146 * 239.99730 * 2 1 3 27 27 H 1.09003 * 109.47071 * 119.99686 * 2 1 3 28 28 H 1.09002 * 117.51788 * 145.04266 * 6 4 3 29 29 H 1.09001 * 117.49485 * 0.02562 * 6 4 3 30 30 H 1.08999 * 109.47284 * 59.99507 * 12 11 9 31 31 H 1.09001 * 109.46696 * 299.99873 * 12 11 9 32 32 H 1.08991 * 109.47455 * 59.99848 * 13 12 11 33 33 H 1.09001 * 109.46830 * 299.99293 * 13 12 11 34 34 H 1.09004 * 109.47503 * 59.99893 * 14 13 12 35 35 H 1.09001 * 109.46939 * 299.99294 * 14 13 12 36 36 H 0.96999 * 120.00235 * 179.72806 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5198 -0.0751 6 6 4.0523 2.5735 0.8465 7 6 4.0419 2.6877 -0.6792 8 1 3.3574 3.4092 -1.1253 9 6 5.3528 2.5040 -1.3996 10 8 5.8801 1.4173 -1.4269 11 8 5.9346 3.5478 -2.0110 12 6 7.1958 3.2975 -2.6857 13 6 7.7023 4.5953 -3.3180 14 6 9.0315 4.3315 -4.0284 15 6 9.5302 5.6097 -4.6518 16 1 8.9562 6.5191 -4.5517 17 6 10.7191 5.6183 -5.3499 18 7 11.1541 6.7336 -5.8944 19 14 11.7157 4.0471 -5.5165 20 1 12.6645 3.9398 -4.3791 21 1 10.8006 2.8775 -5.5097 22 1 12.4741 4.0749 -6.7928 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0072 2.3656 1.3292 29 1 3.3743 3.2193 1.4044 30 1 7.0495 2.5471 -3.4627 31 1 7.9281 2.9353 -1.9641 32 1 7.8486 5.3452 -2.5408 33 1 6.9700 4.9578 -4.0395 34 1 8.8856 3.5814 -4.8056 35 1 9.7635 3.9693 -3.3065 36 1 11.9925 6.7404 -6.3821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919431770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:46 Heat of formation + Delta-G solvation = -120.792011 kcal Electronic energy + Delta-G solvation = -16574.148527 eV Core-core repulsion = 13638.252010 eV Total energy + Delta-G solvation = -2935.896517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56589 -38.78330 -36.73558 -35.35559 -34.07872 -31.85644 -31.18904 -27.84728 -25.17137 -23.27860 -22.77837 -22.42901 -20.55117 -20.03037 -18.17138 -17.05357 -16.69085 -16.37041 -16.26415 -15.92512 -15.06152 -14.29634 -14.17655 -13.63951 -13.11794 -13.05610 -12.76765 -12.70981 -12.42830 -12.34984 -11.91207 -11.60937 -11.35887 -11.07402 -10.99749 -10.90985 -10.57823 -10.45488 -10.03261 -9.84291 -9.75058 -9.55757 -9.25430 -8.57326 -6.07431 -4.06550 2.06197 2.50140 3.25884 3.29333 3.36938 3.40291 3.51075 4.34785 4.42407 4.46204 4.64340 4.69259 4.86319 4.90991 5.00033 5.10964 5.25714 5.35697 5.43668 5.44760 5.47654 5.51433 5.63968 5.73442 5.84878 6.33180 6.38137 6.64408 6.79047 6.79728 7.20330 7.31597 7.71410 7.84029 8.49351 8.96892 9.53972 11.05726 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.059757 B = 0.003224 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.451684 B = 8681.942037 C = 8833.035800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.053 3.947 5 H 0.127 0.873 6 C -0.150 4.150 7 C -0.170 4.170 8 H 0.141 0.859 9 C 0.491 3.509 10 O -0.516 6.516 11 O -0.349 6.349 12 C 0.065 3.935 13 C -0.102 4.102 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.265 1.265 22 H -0.287 1.287 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.019 0.981 35 H 0.015 0.985 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.484 -12.823 13.535 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.273 6.273 4 C -0.005 4.005 5 H 0.144 0.856 6 C -0.187 4.187 7 C -0.189 4.189 8 H 0.159 0.841 9 C 0.334 3.666 10 O -0.405 6.405 11 O -0.265 6.265 12 C -0.008 4.008 13 C -0.139 4.139 14 C -0.048 4.048 15 C -0.560 4.560 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.190 1.190 22 H -0.213 1.213 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.273 -12.894 13.383 26.063 hybrid contribution 0.924 -0.925 -0.324 1.347 sum -17.349 -13.820 13.060 25.739 Atomic orbital electron populations 1.21761 0.93371 1.02503 1.03293 1.22608 0.95668 0.83030 1.00713 1.87826 1.18200 1.27346 1.93883 1.22692 0.82323 0.94243 1.01285 0.85597 1.23532 1.03247 1.01608 0.90329 1.22215 0.95078 1.05109 0.96507 0.84078 1.22403 0.85464 0.82422 0.76291 1.90641 1.64452 1.27050 1.58367 1.86497 1.38220 1.38641 1.63118 1.23540 0.80678 1.01000 0.95543 1.21565 0.98944 0.93765 0.99665 1.19524 0.91590 0.98335 0.95346 1.21055 1.06689 0.95085 1.33129 0.90774 1.25018 0.97348 0.96134 0.94938 1.69907 1.21750 1.26462 1.35890 0.86778 0.80474 0.84397 0.77651 1.20206 1.18995 1.21278 0.90827 0.91744 0.91673 0.92773 0.92817 0.87135 0.86485 0.91456 0.91475 0.91471 0.91452 0.96280 0.96712 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.06 0.42 6.53 37.16 0.24 0.66 16 3 O -0.35 -3.58 10.60 -35.23 -0.37 -3.96 16 4 C 0.05 0.54 5.96 -26.70 -0.16 0.38 16 5 H 0.13 1.26 7.46 -51.93 -0.39 0.88 16 6 C -0.15 -1.36 10.19 -26.70 -0.27 -1.63 16 7 C -0.17 -1.93 6.25 -91.77 -0.57 -2.51 16 8 H 0.14 1.48 8.14 -51.93 -0.42 1.05 16 9 C 0.49 7.37 7.74 36.01 0.28 7.65 16 10 O -0.52 -8.82 16.01 -18.75 -0.30 -9.12 16 11 O -0.35 -5.78 10.22 -39.26 -0.40 -6.19 16 12 C 0.07 1.16 5.47 37.16 0.20 1.36 16 13 C -0.10 -2.05 5.53 -26.73 -0.15 -2.19 16 14 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 15 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 16 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 19 Si 0.88 21.74 27.46 -169.99 -4.67 17.07 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.30 6.55 56.52 0.37 -5.93 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.02 0.45 7.21 -51.93 -0.37 0.08 16 35 H 0.01 0.34 7.56 -51.93 -0.39 -0.05 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -32.14 312.34 -6.66 -38.80 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.81 Total: -3.72 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.59 Total: -10.55 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.77 Total: -27.06 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.07 Total: -19.26 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.14 -6.66 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919431770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.987 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds