Wall clock time and date at job start Sun Mar 29 2020 22:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46958 * 2 1 4 4 C 1.42899 * 114.00178 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55152 * 4.32410 * 4 3 2 6 6 C 1.53072 * 117.51382 * 218.60851 * 4 3 2 7 7 C 1.52994 * 59.98387 * 252.52091 * 6 4 3 8 8 H 1.09001 * 117.50451 * 107.50307 * 7 6 4 9 9 C 1.50704 * 117.49626 * 252.50095 * 7 6 4 10 10 O 1.20820 * 120.00313 * 68.74672 * 9 7 6 11 11 O 1.34230 * 119.99832 * 248.74200 * 9 7 6 12 12 C 1.45203 * 117.00158 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47112 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46737 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99501 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00481 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 359.72901 * 17 15 14 20 20 H 1.48502 * 109.46964 * 270.27509 * 19 17 15 21 21 H 1.48505 * 109.47036 * 30.26897 * 19 17 15 22 22 H 1.48490 * 109.47395 * 150.27411 * 19 17 15 23 23 H 1.09004 * 109.46834 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.47226 * 299.99744 * 1 2 3 25 25 H 1.08991 * 109.47639 * 59.99944 * 1 2 3 26 26 H 1.08996 * 109.47146 * 239.99730 * 2 1 3 27 27 H 1.09003 * 109.47071 * 119.99686 * 2 1 3 28 28 H 1.09002 * 117.51788 * 145.04266 * 6 4 3 29 29 H 1.09001 * 117.49485 * 0.02562 * 6 4 3 30 30 H 1.08999 * 109.47284 * 59.99507 * 12 11 9 31 31 H 1.09001 * 109.46696 * 299.99873 * 12 11 9 32 32 H 1.08991 * 109.47455 * 59.99848 * 13 12 11 33 33 H 1.09001 * 109.46830 * 299.99293 * 13 12 11 34 34 H 1.09004 * 109.47503 * 59.99893 * 14 13 12 35 35 H 1.09001 * 109.46939 * 299.99294 * 14 13 12 36 36 H 0.96999 * 120.00235 * 179.72806 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5198 -0.0751 6 6 4.0523 2.5735 0.8465 7 6 4.0419 2.6877 -0.6792 8 1 3.3574 3.4092 -1.1253 9 6 5.3528 2.5040 -1.3996 10 8 5.8801 1.4173 -1.4269 11 8 5.9346 3.5478 -2.0110 12 6 7.1958 3.2975 -2.6857 13 6 7.7023 4.5953 -3.3180 14 6 9.0315 4.3315 -4.0284 15 6 9.5302 5.6097 -4.6518 16 1 8.9562 6.5191 -4.5517 17 6 10.7191 5.6183 -5.3499 18 7 11.1541 6.7336 -5.8944 19 14 11.7157 4.0471 -5.5165 20 1 12.6645 3.9398 -4.3791 21 1 10.8006 2.8775 -5.5097 22 1 12.4741 4.0749 -6.7928 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0072 2.3656 1.3292 29 1 3.3743 3.2193 1.4044 30 1 7.0495 2.5471 -3.4627 31 1 7.9281 2.9353 -1.9641 32 1 7.8486 5.3452 -2.5408 33 1 6.9700 4.9578 -4.0395 34 1 8.8856 3.5814 -4.8056 35 1 9.7635 3.9693 -3.3065 36 1 11.9925 6.7404 -6.3821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919431770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:46 Heat of formation + Delta-G solvation = -140.209184 kcal Electronic energy + Delta-G solvation = -16574.990519 eV Core-core repulsion = 13638.252010 eV Total energy + Delta-G solvation = -2936.738509 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.73403 -39.61759 -37.94438 -36.20641 -35.95248 -33.88081 -31.75424 -29.62525 -26.45028 -24.38442 -23.82410 -23.20558 -22.12141 -21.35465 -19.19899 -18.97070 -17.90568 -17.66144 -17.30894 -16.52588 -16.33216 -15.92460 -15.64146 -14.84681 -14.72564 -14.09752 -13.87376 -13.74584 -13.62792 -13.36861 -13.09729 -12.87319 -12.60597 -12.22928 -12.14587 -12.04728 -11.93602 -11.79056 -11.72860 -11.48254 -11.42317 -11.37330 -10.78517 -10.32157 -8.31073 -6.36403 0.94038 1.36344 1.37866 1.42788 1.49878 2.35006 2.47559 2.67097 3.03906 3.49712 3.59665 3.85858 3.96742 3.98101 3.99817 4.17667 4.29363 4.35203 4.42214 4.49386 4.68766 4.71541 4.75482 4.87057 4.93703 4.95041 5.02653 5.27549 5.29293 5.46725 5.47472 5.61018 6.12345 6.24625 6.61379 6.71662 7.28120 8.85508 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.059757 B = 0.003224 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.451684 B = 8681.942037 C = 8833.035800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.367 6.367 4 C 0.056 3.944 5 H 0.126 0.874 6 C -0.131 4.131 7 C -0.185 4.185 8 H 0.149 0.851 9 C 0.491 3.509 10 O -0.538 6.538 11 O -0.356 6.356 12 C 0.074 3.926 13 C -0.093 4.093 14 C -0.009 4.009 15 C -0.535 4.535 16 H 0.035 0.965 17 C 0.004 3.996 18 N -0.950 5.950 19 Si 0.951 3.049 20 H -0.265 1.265 21 H -0.246 1.246 22 H -0.283 1.283 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.105 -14.929 14.775 28.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.286 6.286 4 C -0.002 4.002 5 H 0.143 0.857 6 C -0.168 4.168 7 C -0.204 4.204 8 H 0.167 0.833 9 C 0.336 3.664 10 O -0.429 6.429 11 O -0.272 6.272 12 C 0.000 4.000 13 C -0.131 4.131 14 C -0.046 4.046 15 C -0.573 4.573 16 H 0.053 0.947 17 C -0.193 4.193 18 N -0.590 5.590 19 Si 0.774 3.226 20 H -0.190 1.190 21 H -0.169 1.169 22 H -0.209 1.209 23 H 0.111 0.889 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.924 -15.005 14.640 28.242 hybrid contribution 1.022 -0.209 -0.687 1.249 sum -17.902 -15.214 13.953 27.325 Atomic orbital electron populations 1.21781 0.92285 1.03666 1.02951 1.22838 0.96599 0.82055 1.01371 1.87813 1.17979 1.28948 1.93892 1.22710 0.82565 0.93995 1.00965 0.85694 1.23671 1.03700 1.00778 0.88630 1.22305 0.93435 1.06749 0.97909 0.83317 1.23060 0.86122 0.81601 0.75597 1.90626 1.65337 1.27708 1.59241 1.86488 1.37725 1.39581 1.63403 1.23236 0.81611 0.99209 0.95912 1.21328 0.97255 0.95149 0.99347 1.19449 0.93520 0.95915 0.95745 1.21401 1.06586 0.95828 1.33478 0.94702 1.26023 0.98742 1.00023 0.94494 1.70060 1.22607 1.29188 1.37144 0.85641 0.78944 0.79998 0.77979 1.18991 1.16936 1.20891 0.88942 0.91680 0.92387 0.92805 0.91495 0.86453 0.84603 0.91101 0.90784 0.91783 0.91965 0.95612 0.95597 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.63 6.53 71.98 0.47 1.10 16 3 O -0.37 -6.79 10.60 -148.98 -1.58 -8.37 16 4 C 0.06 1.04 5.96 30.62 0.18 1.22 16 5 H 0.13 2.32 7.46 -2.39 -0.02 2.30 16 6 C -0.13 -2.06 10.19 30.62 0.31 -1.74 16 7 C -0.18 -3.91 6.25 -11.54 -0.07 -3.98 16 8 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 9 C 0.49 14.10 7.74 71.24 0.55 14.66 16 10 O -0.54 -17.71 16.01 21.98 0.35 -17.36 16 11 O -0.36 -11.38 10.22 -51.42 -0.53 -11.90 16 12 C 0.07 2.50 5.47 71.98 0.39 2.89 16 13 C -0.09 -3.69 5.53 30.59 0.17 -3.52 16 14 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 15 C -0.54 -31.03 9.66 25.60 0.25 -30.78 16 16 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 17 C 0.00 0.24 5.47 84.65 0.46 0.71 16 18 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 19 Si 0.95 44.17 27.46 68.60 1.88 46.05 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.25 -10.57 6.55 99.48 0.65 -9.91 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 2.36 8.13 -2.39 -0.02 2.34 16 31 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.03 1.17 7.21 -2.39 -0.02 1.15 16 35 H 0.03 1.15 7.56 -2.39 -0.02 1.13 16 36 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -69.00 312.34 4.99 -64.00 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.99 Total: 7.63 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 3.58 Total: -20.53 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.30 Total: -59.52 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.75 Total: -37.63 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -69.00 4.99 -64.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919431770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.205 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds