Wall clock time and date at job start Sun Mar 29 2020 22:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00345 * 2 1 4 4 H 1.48509 * 109.47417 * 270.00348 * 3 2 1 5 5 H 1.48500 * 109.46869 * 29.99914 * 3 2 1 6 6 H 1.48494 * 109.47291 * 149.99979 * 3 2 1 7 7 C 1.37878 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00282 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00220 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47021 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47023 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47230 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99811 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00240 * 179.97438 * 13 12 11 16 16 C 1.47102 * 120.84688 * 179.97438 * 15 13 12 17 17 C 1.53423 * 108.21559 * 129.43556 * 16 15 13 18 18 O 1.43159 * 108.69015 * 49.38354 * 17 16 15 19 19 C 1.42985 * 113.78295 * 301.27876 * 18 17 16 20 20 N 1.37119 * 120.84380 * 0.02562 * 15 13 12 21 21 H 0.97005 * 120.00051 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47625 * 59.99106 * 9 7 2 23 23 H 1.09001 * 109.46600 * 299.99397 * 9 7 2 24 24 H 1.08993 * 109.47246 * 59.99775 * 10 9 7 25 25 H 1.09001 * 109.46982 * 299.99363 * 10 9 7 26 26 H 1.08999 * 109.47012 * 59.99492 * 11 10 9 27 27 H 1.09001 * 109.46950 * 299.99662 * 11 10 9 28 28 H 1.09001 * 109.47042 * 59.99622 * 12 11 10 29 29 H 1.09001 * 109.47304 * 299.99840 * 12 11 10 30 30 H 1.08995 * 109.71524 * 249.11845 * 16 15 13 31 31 H 1.08998 * 109.70998 * 9.76230 * 16 15 13 32 32 H 1.08998 * 109.60348 * 289.61464 * 17 16 15 33 33 H 1.09009 * 109.59609 * 169.13719 * 17 16 15 34 34 H 1.08996 * 109.46669 * 180.96406 * 19 18 17 35 35 H 1.08997 * 109.46954 * 300.96316 * 19 18 17 36 36 H 1.00896 * 111.00723 * 109.74249 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 6 6.0614 -4.0791 0.0004 13 6 7.5684 -4.0792 -0.0003 14 8 8.1748 -3.0289 -0.0006 15 7 8.2423 -5.2464 0.0005 16 6 9.7132 -5.2681 -0.0007 17 6 10.1800 -6.1995 1.1256 18 8 9.4664 -7.4363 1.0235 19 6 8.0463 -7.2913 1.1070 20 7 7.5743 -6.4438 0.0015 21 1 -0.4850 0.8401 0.0004 22 1 3.8746 -0.6808 0.8904 23 1 3.8751 -0.6798 -0.8895 24 1 3.6584 -3.1502 -0.8902 25 1 3.6578 -3.1506 0.8897 26 1 5.9148 -2.1228 0.8898 27 1 5.9147 -2.1228 -0.8901 28 1 5.6980 -4.5933 -0.8894 29 1 5.6982 -4.5926 0.8906 30 1 10.0746 -5.6404 -0.9592 31 1 10.0958 -4.2622 0.1718 32 1 9.9745 -5.7373 2.0911 33 1 11.2496 -6.3852 1.0267 34 1 7.5764 -8.2724 1.0389 35 1 7.7838 -6.8280 2.0580 36 1 7.6759 -6.9154 -0.8847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928948040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:18 Heat of formation + Delta-G solvation = -64.212465 kcal Electronic energy + Delta-G solvation = -17290.208312 eV Core-core repulsion = 14389.058019 eV Total energy + Delta-G solvation = -2901.150293 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81730 -38.77724 -35.78508 -35.02011 -32.74813 -32.41674 -30.33087 -28.65756 -25.91080 -25.51571 -23.16920 -21.56552 -20.01226 -19.92908 -17.57207 -17.36413 -16.84114 -16.54663 -16.33151 -15.52010 -15.42355 -14.87495 -14.31773 -14.05604 -13.81283 -13.19695 -12.62288 -12.30698 -12.16376 -12.03618 -11.70966 -11.68230 -11.05848 -10.82524 -10.68884 -10.48293 -10.35487 -9.81568 -9.65682 -9.60155 -9.34836 -9.13061 -9.08204 -8.46615 -5.97794 -3.94951 2.22606 2.53143 3.30037 3.37284 3.44128 3.50376 3.72219 4.37440 4.51587 4.52587 4.55150 4.90036 5.01883 5.02891 5.22097 5.33024 5.36595 5.39859 5.44251 5.90540 5.95544 6.11555 6.23326 6.38426 6.47578 6.59728 6.73888 6.87529 7.04030 7.42069 7.42635 7.55217 7.87992 8.10334 8.61734 9.07646 9.65754 11.15791 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.053567 B = 0.003863 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.583930 B = 7245.967766 C = 7626.926264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.101 4.101 11 C -0.110 4.110 12 C -0.120 4.120 13 C 0.543 3.457 14 O -0.532 6.532 15 N -0.477 5.477 16 C 0.049 3.951 17 C 0.047 3.953 18 O -0.409 6.409 19 C 0.202 3.798 20 N -0.450 5.450 21 H 0.262 0.738 22 H 0.015 0.985 23 H 0.011 0.989 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.129 -15.770 1.084 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.148 4.148 12 C -0.159 4.159 13 C 0.334 3.666 14 O -0.405 6.405 15 N -0.305 5.305 16 C -0.076 4.076 17 C -0.031 4.031 18 O -0.323 6.323 19 C 0.036 3.964 20 N -0.185 5.185 21 H 0.072 0.928 22 H 0.033 0.967 23 H 0.029 0.971 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 19.885 -14.969 1.436 24.931 hybrid contribution 1.076 0.587 -0.348 1.274 sum 20.961 -14.383 1.088 25.444 Atomic orbital electron populations 1.69923 1.06305 1.26783 1.51597 1.25043 0.94728 0.99207 0.94662 0.86774 0.80425 0.83575 0.78519 1.20329 1.21483 1.18925 1.21199 0.89701 0.94384 1.50350 0.91079 1.19582 0.96881 0.92592 0.96259 1.21456 0.91645 0.99781 1.01006 1.21556 0.97376 0.93265 1.02636 1.21586 0.88911 1.00598 1.04818 1.21109 0.91259 0.80754 0.73437 1.90713 1.70717 1.29659 1.49389 1.47663 1.03804 1.02370 1.76632 1.22692 0.81825 1.03317 0.99723 1.23069 0.97491 0.84639 0.97877 1.88122 1.19798 1.30613 1.93803 1.24049 0.79574 0.98312 0.94431 1.62005 1.49330 0.98258 1.08894 0.92848 0.96670 0.97089 0.92819 0.92805 0.92009 0.91976 0.88726 0.88660 0.90656 0.87230 0.92042 0.87488 0.85700 0.90346 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.60 13.96 55.43 0.77 -27.82 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.55 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.12 -1.62 4.97 -27.88 -0.14 -1.76 16 13 C 0.54 7.58 7.78 -10.99 -0.09 7.49 16 14 O -0.53 -9.21 15.44 5.56 0.09 -9.13 16 15 N -0.48 -5.11 3.27 -59.66 -0.20 -5.31 16 16 C 0.05 0.44 6.78 -3.49 -0.02 0.41 16 17 C 0.05 0.35 7.10 37.38 0.27 0.62 16 18 O -0.41 -3.47 10.88 -35.23 -0.38 -3.85 16 19 C 0.20 1.44 7.72 60.17 0.46 1.91 16 20 N -0.45 -3.74 6.52 -14.45 -0.09 -3.83 16 21 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 22 H 0.01 0.38 7.20 -51.93 -0.37 0.00 16 23 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 27 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 1.09 7.07 -51.93 -0.37 0.73 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.35 2.38 9.03 -181.01 -1.63 0.74 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -34.28 298.11 -7.31 -41.59 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -7.00 Total: -4.24 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.32 Total: -9.74 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.48 Total: -36.96 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.30 Total: -12.98 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.28 -7.31 -41.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928948040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.621 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds