Wall clock time and date at job start Sun Mar 29 2020 22:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00345 * 2 1 4 4 H 1.48509 * 109.47417 * 270.00348 * 3 2 1 5 5 H 1.48500 * 109.46869 * 29.99914 * 3 2 1 6 6 H 1.48494 * 109.47291 * 149.99979 * 3 2 1 7 7 C 1.37878 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00282 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00220 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47021 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47023 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47230 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99811 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00240 * 179.97438 * 13 12 11 16 16 C 1.47102 * 120.84688 * 179.97438 * 15 13 12 17 17 C 1.53423 * 108.21559 * 129.43556 * 16 15 13 18 18 O 1.43159 * 108.69015 * 49.38354 * 17 16 15 19 19 C 1.42985 * 113.78295 * 301.27876 * 18 17 16 20 20 N 1.37119 * 120.84380 * 0.02562 * 15 13 12 21 21 H 0.97005 * 120.00051 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47625 * 59.99106 * 9 7 2 23 23 H 1.09001 * 109.46600 * 299.99397 * 9 7 2 24 24 H 1.08993 * 109.47246 * 59.99775 * 10 9 7 25 25 H 1.09001 * 109.46982 * 299.99363 * 10 9 7 26 26 H 1.08999 * 109.47012 * 59.99492 * 11 10 9 27 27 H 1.09001 * 109.46950 * 299.99662 * 11 10 9 28 28 H 1.09001 * 109.47042 * 59.99622 * 12 11 10 29 29 H 1.09001 * 109.47304 * 299.99840 * 12 11 10 30 30 H 1.08995 * 109.71524 * 249.11845 * 16 15 13 31 31 H 1.08998 * 109.70998 * 9.76230 * 16 15 13 32 32 H 1.08998 * 109.60348 * 289.61464 * 17 16 15 33 33 H 1.09009 * 109.59609 * 169.13719 * 17 16 15 34 34 H 1.08996 * 109.46669 * 180.96406 * 19 18 17 35 35 H 1.08997 * 109.46954 * 300.96316 * 19 18 17 36 36 H 1.00896 * 111.00723 * 109.74249 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 6 6.0614 -4.0791 0.0004 13 6 7.5684 -4.0792 -0.0003 14 8 8.1748 -3.0289 -0.0006 15 7 8.2423 -5.2464 0.0005 16 6 9.7132 -5.2681 -0.0007 17 6 10.1800 -6.1995 1.1256 18 8 9.4664 -7.4363 1.0235 19 6 8.0463 -7.2913 1.1070 20 7 7.5743 -6.4438 0.0015 21 1 -0.4850 0.8401 0.0004 22 1 3.8746 -0.6808 0.8904 23 1 3.8751 -0.6798 -0.8895 24 1 3.6584 -3.1502 -0.8902 25 1 3.6578 -3.1506 0.8897 26 1 5.9148 -2.1228 0.8898 27 1 5.9147 -2.1228 -0.8901 28 1 5.6980 -4.5933 -0.8894 29 1 5.6982 -4.5926 0.8906 30 1 10.0746 -5.6404 -0.9592 31 1 10.0958 -4.2622 0.1718 32 1 9.9745 -5.7373 2.0911 33 1 11.2496 -6.3852 1.0267 34 1 7.5764 -8.2724 1.0389 35 1 7.7838 -6.8280 2.0580 36 1 7.6759 -6.9154 -0.8847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928948040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:17 Heat of formation + Delta-G solvation = -89.986900 kcal Electronic energy + Delta-G solvation = -17291.325975 eV Core-core repulsion = 14389.058019 eV Total energy + Delta-G solvation = -2902.267956 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.64517 -39.68799 -36.72637 -36.51188 -34.60685 -33.29939 -31.95960 -29.67674 -27.43556 -26.21395 -24.37307 -22.85866 -21.68781 -20.88508 -18.85375 -18.39960 -18.16516 -17.56334 -17.16081 -16.46687 -16.31808 -16.11852 -15.80801 -15.36979 -15.01509 -14.68973 -14.01261 -13.70639 -13.67153 -13.45807 -12.84090 -12.69433 -12.42681 -12.30842 -12.05247 -11.74196 -11.56409 -11.46690 -11.33508 -11.26679 -11.13530 -10.74812 -10.31049 -9.96684 -8.28471 -6.31515 1.35860 1.37291 1.41642 1.48833 1.50327 2.37189 2.74325 3.03015 3.06930 3.72996 3.74699 3.94509 4.09475 4.14884 4.18834 4.38029 4.52695 4.59291 4.66301 4.69179 4.72354 4.84166 4.89429 5.17042 5.21480 5.27368 5.35633 5.57226 5.63615 5.67549 5.70101 6.03169 6.31156 6.54151 6.76503 7.14357 7.33260 8.88249 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.053567 B = 0.003863 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.583930 B = 7245.967766 C = 7626.926264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.531 4.531 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.093 4.093 11 C -0.100 4.100 12 C -0.110 4.110 13 C 0.542 3.458 14 O -0.574 6.574 15 N -0.473 5.473 16 C 0.047 3.953 17 C 0.050 3.950 18 O -0.417 6.417 19 C 0.201 3.799 20 N -0.453 5.453 21 H 0.266 0.734 22 H 0.014 0.986 23 H 0.013 0.987 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.073 0.927 36 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.924 -16.575 1.033 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.054 4.054 10 C -0.130 4.130 11 C -0.138 4.138 12 C -0.150 4.150 13 C 0.333 3.667 14 O -0.451 6.451 15 N -0.298 5.298 16 C -0.077 4.077 17 C -0.027 4.027 18 O -0.332 6.332 19 C 0.035 3.965 20 N -0.189 5.189 21 H 0.075 0.925 22 H 0.032 0.968 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.091 0.909 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 21.699 -15.832 1.381 26.897 hybrid contribution 0.468 0.712 -0.331 0.914 sum 22.167 -15.120 1.050 26.854 Atomic orbital electron populations 1.70063 1.08151 1.28085 1.52930 1.26000 0.95620 1.03423 0.94275 0.85683 0.79378 0.78547 0.79205 1.19168 1.20724 1.17580 1.21554 0.92146 0.93220 1.49946 0.94521 1.19577 0.93871 0.95832 0.96121 1.21319 0.93682 0.96723 1.01299 1.21351 0.94955 0.95759 1.01739 1.21442 0.89021 0.98214 1.06306 1.21042 0.91304 0.81100 0.73262 1.90697 1.71393 1.31305 1.51657 1.47528 1.04633 1.02545 1.75054 1.22829 0.80551 1.03166 1.01144 1.23128 0.98671 0.84024 0.96892 1.88120 1.20393 1.30918 1.93729 1.24242 0.79217 0.99344 0.93682 1.62016 1.49338 0.97513 1.10044 0.92514 0.96768 0.96821 0.92495 0.92587 0.93018 0.92831 0.87053 0.87273 0.89281 0.88530 0.92521 0.85229 0.82958 0.90870 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.00 0.20 5.47 84.66 0.46 0.66 16 3 Si 0.95 46.15 27.47 68.60 1.88 48.04 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 7 C -0.53 -31.57 9.66 25.60 0.25 -31.33 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 9 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 10 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 11 C -0.10 -3.33 4.50 30.59 0.14 -3.19 16 12 C -0.11 -2.79 4.97 29.85 0.15 -2.65 16 13 C 0.54 14.42 7.78 87.66 0.68 15.10 16 14 O -0.57 -19.65 15.44 -3.02 -0.05 -19.70 16 15 N -0.47 -9.27 3.27 -461.06 -1.51 -10.78 16 16 C 0.05 0.76 6.78 86.41 0.59 1.35 16 17 C 0.05 0.64 7.10 72.12 0.51 1.16 16 18 O -0.42 -5.98 10.88 -148.98 -1.62 -7.60 16 19 C 0.20 2.33 7.72 127.66 0.99 3.31 16 20 N -0.45 -6.38 6.52 -299.65 -1.95 -8.33 16 21 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 22 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 23 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 27 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 28 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.86 7.07 -2.39 -0.02 1.85 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.36 3.89 9.03 -210.25 -1.90 1.99 16 Total: -1.00 -74.08 298.11 0.20 -73.88 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -0.89 Total: 4.90 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.04 Total: -19.75 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -3.16 Total: -79.77 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.67 Total: -27.30 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.04 kcal Total: -74.08 0.20 -73.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928948040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.105 kcal (2) G-P(sol) polarization free energy of solvation -74.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds