Wall clock time and date at job start Sun Mar 29 2020 23:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46870 * 2 1 4 4 H 1.08997 * 109.47007 * 304.07634 * 3 2 1 5 5 C 1.50701 * 109.46708 * 184.07330 * 3 2 1 6 6 H 1.07993 * 120.00301 * 239.99357 * 5 3 2 7 7 C 1.37879 * 119.99571 * 60.00288 * 5 3 2 8 8 N 1.31513 * 120.00740 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99550 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47040 * 89.99928 * 9 7 5 11 11 H 1.48500 * 109.46960 * 209.99692 * 9 7 5 12 12 H 1.48498 * 109.47126 * 329.99974 * 9 7 5 13 13 N 1.46904 * 109.47110 * 64.07519 * 3 2 1 14 14 C 1.46900 * 110.99770 * 205.33674 * 13 3 2 15 15 H 1.08997 * 110.44044 * 328.73265 * 14 13 3 16 16 C 1.54625 * 110.48856 * 206.18311 * 14 13 3 17 17 C 1.54475 * 101.76753 * 266.12733 * 16 14 13 18 18 N 1.46767 * 105.47193 * 334.58108 * 17 16 14 19 19 O 1.41601 * 124.34729 * 197.01725 * 18 17 16 20 20 C 1.42907 * 113.99910 * 90.00577 * 19 18 17 21 21 C 1.34420 * 111.30311 * 17.28633 * 18 17 16 22 22 O 1.21278 * 124.94767 * 179.30877 * 21 18 17 23 23 H 1.08997 * 109.47126 * 54.83785 * 1 2 3 24 24 H 1.08990 * 109.47291 * 174.84039 * 1 2 3 25 25 H 1.08997 * 109.47195 * 294.84482 * 1 2 3 26 26 H 1.08992 * 109.47353 * 239.99888 * 2 1 3 27 27 H 1.08998 * 109.46941 * 119.99685 * 2 1 3 28 28 H 0.96990 * 120.00633 * 180.02562 * 8 7 5 29 29 H 1.00902 * 110.99473 * 81.38727 * 13 3 2 30 30 H 1.09001 * 110.97000 * 148.00110 * 16 14 13 31 31 H 1.09003 * 110.99582 * 24.25582 * 16 14 13 32 32 H 1.09001 * 110.24333 * 215.58452 * 17 16 14 33 33 H 1.09001 * 110.32452 * 93.61930 * 17 16 14 34 34 H 1.08999 * 109.47465 * 59.99492 * 20 19 18 35 35 H 1.09000 * 109.47150 * 179.97438 * 20 19 18 36 36 H 1.09003 * 109.46446 * 299.99623 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6182 1.9770 -0.8512 5 6 3.5436 1.4437 -0.1009 6 1 4.1371 1.8925 0.6818 7 6 4.1616 0.8719 -1.1928 8 7 3.4391 0.3250 -2.1459 9 14 6.0255 0.8740 -1.3182 10 1 6.5658 -0.3541 -0.6817 11 1 6.4253 0.9073 -2.7480 12 1 6.5669 2.0702 -0.6247 13 7 1.6323 2.1061 1.2456 14 6 1.5484 3.5614 1.0638 15 1 2.2757 3.8951 0.3238 16 6 1.7729 4.2888 2.4097 17 6 0.3242 4.4759 2.9121 18 7 -0.5116 4.4772 1.7057 19 8 -1.8427 4.9576 1.6564 20 6 -1.9482 6.3453 1.3319 21 6 0.1469 3.9584 0.6549 22 8 -0.3143 3.8299 -0.4594 23 1 -0.3633 0.5918 -0.8401 24 1 -0.3633 -1.0234 -0.0924 25 1 -0.3633 0.4318 0.9325 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8739 -0.0775 -2.9138 29 1 2.2581 1.8716 2.0017 30 1 2.2601 5.2517 2.2561 31 1 2.3474 3.6686 3.0978 32 1 0.2274 5.4252 3.4390 33 1 0.0409 3.6514 3.5664 34 1 -1.5053 6.5240 0.3521 35 1 -2.9987 6.6353 1.3137 36 1 -1.4210 6.9348 2.0820 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930692401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:09 Heat of formation + Delta-G solvation = -48.055809 kcal Electronic energy + Delta-G solvation = -18387.592217 eV Core-core repulsion = 15487.142529 eV Total energy + Delta-G solvation = -2900.449687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36561 -38.28449 -37.90240 -36.65192 -34.06570 -32.78295 -30.37699 -28.59247 -27.58706 -26.85738 -24.55248 -22.85151 -21.44087 -21.12681 -18.87232 -18.53319 -17.69438 -16.81919 -16.68955 -16.09334 -15.76713 -15.50367 -15.11801 -15.04674 -14.69800 -14.43528 -14.08193 -13.69616 -13.26744 -13.13190 -13.02152 -12.87028 -12.60706 -12.40598 -12.31970 -12.01177 -11.69990 -11.54061 -11.35978 -11.05605 -10.77316 -10.43229 -9.99374 -9.17488 -8.03060 -6.26191 0.77808 1.43533 1.43748 1.45228 1.53568 2.43352 3.18574 3.43065 3.49767 3.55853 3.79612 4.02189 4.32433 4.34551 4.43617 4.56892 4.63010 4.65296 4.68518 4.73413 4.88704 5.01565 5.08472 5.17938 5.35710 5.49135 5.60696 5.75451 5.78929 5.93344 6.08892 6.13093 6.29828 6.79209 7.02078 7.17612 7.46127 8.95828 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030987 B = 0.006789 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.393443 B = 4123.050203 C = 4452.443196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.100 4.100 3 C 0.222 3.778 4 H -0.011 1.011 5 C -0.556 4.556 6 H 0.068 0.932 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.263 1.263 13 N -0.661 5.661 14 C 0.066 3.934 15 H 0.067 0.933 16 C -0.117 4.117 17 C 0.111 3.889 18 N -0.486 5.486 19 O -0.160 6.160 20 C -0.006 4.006 21 C 0.523 3.477 22 O -0.574 6.574 23 H 0.012 0.988 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.260 0.740 29 H 0.352 0.648 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.032 0.968 35 H 0.131 0.869 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 10.604 13.499 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.007 0.993 5 C -0.595 4.595 6 H 0.086 0.914 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.187 1.187 13 N -0.295 5.295 14 C -0.048 4.048 15 H 0.085 0.915 16 C -0.155 4.155 17 C -0.007 4.007 18 N -0.267 5.267 19 O -0.161 6.161 20 C -0.103 4.103 21 C 0.312 3.688 22 O -0.451 6.451 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.173 0.827 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.149 0.851 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.614 10.270 12.697 16.970 hybrid contribution 1.478 0.288 -1.101 1.866 sum -3.136 10.558 11.595 15.992 Atomic orbital electron populations 1.21518 0.97427 0.99123 0.99773 1.21349 0.93379 0.98567 1.00565 1.18981 0.92128 0.91271 0.86262 0.99268 1.22169 0.93136 1.37910 1.06283 0.91384 1.25803 1.02670 0.94797 0.95363 1.70065 1.36835 1.38615 1.10119 0.85554 0.80331 0.78831 0.76856 1.19903 1.21836 1.18736 1.60502 1.56294 1.03684 1.09035 1.21945 0.90532 0.91986 1.00362 0.91521 1.22983 0.95913 1.02744 0.93852 1.22515 0.88009 1.05169 0.85035 1.50611 1.05135 1.59036 1.11945 1.90605 1.05330 1.27544 1.92655 1.23539 1.05185 0.81503 1.00093 1.22039 0.88510 0.75065 0.83209 1.90650 1.73604 1.56364 1.24436 0.96904 0.93436 0.92906 0.92171 0.93975 0.93058 0.82666 0.87115 0.85614 0.86764 0.89000 0.94938 0.85139 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 9.73 71.98 0.70 -4.84 16 2 C -0.10 -5.01 5.45 30.60 0.17 -4.85 16 3 C 0.22 11.35 1.84 44.17 0.08 11.43 16 4 H -0.01 -0.66 7.79 -2.39 -0.02 -0.68 16 5 C -0.56 -29.22 8.33 25.60 0.21 -29.00 16 6 H 0.07 3.31 7.74 -2.91 -0.02 3.29 16 7 C 0.01 0.73 5.30 84.66 0.45 1.18 16 8 N -0.92 -54.14 11.30 21.45 0.24 -53.90 16 9 Si 0.96 42.62 29.54 68.60 2.03 44.64 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 13 N -0.66 -26.29 5.60 -473.31 -2.65 -28.94 16 14 C 0.07 2.37 3.03 44.91 0.14 2.50 16 15 H 0.07 2.75 7.69 -2.39 -0.02 2.73 16 16 C -0.12 -2.38 6.84 31.65 0.22 -2.16 16 17 C 0.11 2.21 7.66 86.83 0.66 2.87 16 18 N -0.49 -15.31 3.52 -459.79 -1.62 -16.93 16 19 O -0.16 -4.95 11.80 -31.20 -0.37 -5.32 16 20 C -0.01 -0.13 11.47 113.37 1.30 1.17 16 21 C 0.52 21.45 7.85 87.90 0.69 22.14 16 22 O -0.57 -30.06 17.93 4.56 0.08 -29.98 16 23 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.05 2.29 7.87 -2.39 -0.02 2.27 16 26 H 0.06 3.41 5.97 -2.39 -0.01 3.40 16 27 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.26 14.67 8.31 -92.72 -0.77 13.90 16 29 H 0.35 12.17 7.71 -89.69 -0.69 11.47 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.13 1.97 7.55 -2.39 -0.02 1.96 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -75.08 302.40 2.70 -72.37 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.37 Total: 17.62 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 4.62 Total: 0.44 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -4.03 Total: -99.77 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.29 Total: -35.30 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -75.08 2.70 -72.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930692401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.318 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds