Wall clock time and date at job start Sun Mar 29 2020 22:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.56910 * 2 1 4 4 C 1.53092 * 109.51979 * 239.84612 * 2 1 3 5 5 O 1.42905 * 109.41215 * 182.48223 * 4 2 1 6 6 C 1.42905 * 114.09831 * 61.16158 * 5 4 2 7 7 C 1.53098 * 109.41155 * 298.83847 * 6 5 4 8 8 C 1.53175 * 109.52386 * 120.16108 * 2 1 3 9 9 H 1.08999 * 109.54476 * 57.01959 * 8 2 1 10 10 O 1.45207 * 109.54280 * 296.84023 * 8 2 1 11 11 C 1.34223 * 116.99927 * 149.99811 * 10 8 2 12 12 O 1.20829 * 119.99963 * 0.02562 * 11 10 8 13 13 C 1.50698 * 120.00076 * 179.97438 * 11 10 8 14 14 C 1.52999 * 109.47248 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47248 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00140 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00004 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 120.00079 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46943 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47170 * 120.00119 * 19 17 15 22 22 H 1.48496 * 109.46967 * 240.00209 * 19 17 15 23 23 H 1.08999 * 109.47013 * 180.15598 * 1 2 3 24 24 H 1.09003 * 109.46687 * 300.15305 * 1 2 3 25 25 H 1.08997 * 109.47020 * 60.15285 * 1 2 3 26 26 H 1.08997 * 109.48111 * 62.50365 * 4 2 1 27 27 H 1.08999 * 109.49220 * 302.47275 * 4 2 1 28 28 H 1.09000 * 109.47932 * 58.81878 * 6 5 4 29 29 H 1.08993 * 109.48024 * 178.86013 * 6 5 4 30 30 H 1.08996 * 109.52270 * 297.70307 * 7 6 5 31 31 H 1.08995 * 109.57012 * 177.54155 * 7 6 5 32 32 H 1.09001 * 109.47051 * 300.00144 * 13 11 10 33 33 H 1.08994 * 109.46795 * 60.00409 * 13 11 10 34 34 H 1.08994 * 109.47101 * 300.00324 * 14 13 11 35 35 H 1.09006 * 109.46960 * 59.99941 * 14 13 11 36 36 H 0.97006 * 120.00183 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0416 -0.7248 -1.2477 5 8 3.4694 -0.7742 -1.2164 6 6 4.0044 -1.4816 -0.0959 7 6 3.5717 -0.7871 1.1981 8 6 2.0420 -0.7254 1.2482 9 1 1.6368 -1.7369 1.2740 10 8 1.6220 -0.0034 2.4360 11 6 1.4165 -0.7267 3.5479 12 8 1.5824 -1.9234 3.5294 13 6 0.9798 -0.0461 4.8196 14 6 0.8189 -1.0894 5.9271 15 6 0.3816 -0.4089 7.1986 16 1 0.2329 0.6606 7.2150 17 6 0.1704 -1.1519 8.3406 18 7 0.3510 -2.4544 8.3205 19 14 -0.3723 -0.3085 9.9166 20 1 -0.5027 1.1513 9.6772 21 1 -1.6827 -0.8590 10.3468 22 1 0.6376 -0.5471 10.9788 23 1 -0.3633 -1.0277 0.0028 24 1 -0.3633 0.5162 0.8887 25 1 -0.3633 0.5114 -0.8913 26 1 1.7159 -0.1884 -2.1389 27 1 1.6431 -1.7392 -1.2680 28 1 3.6316 -2.5058 -0.1009 29 1 5.0926 -1.4902 -0.1573 30 1 3.9781 0.2240 1.2223 31 1 3.9418 -1.3492 2.0555 32 1 1.7312 0.6855 5.1165 33 1 0.0277 0.4577 4.6535 34 1 0.0678 -1.8214 5.6303 35 1 1.7713 -1.5930 6.0930 36 1 0.2021 -2.9773 9.1239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122967403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:38 Heat of formation + Delta-G solvation = -160.114519 kcal Electronic energy + Delta-G solvation = -17671.305175 eV Core-core repulsion = 14733.703506 eV Total energy + Delta-G solvation = -2937.601669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48172 -39.03896 -36.25875 -33.90367 -33.59668 -32.04738 -31.06787 -27.07157 -26.28378 -24.78340 -22.61055 -22.06296 -20.34755 -19.78428 -17.48962 -16.70441 -16.45386 -16.00577 -15.79703 -15.12362 -14.78072 -14.49392 -14.34411 -13.92698 -13.24186 -12.83364 -12.62619 -12.27183 -12.23705 -12.13482 -11.56046 -11.36755 -11.22703 -11.03820 -10.98732 -10.66639 -10.52641 -10.19586 -10.07515 -9.97112 -9.82140 -9.50322 -9.17632 -8.39834 -6.03382 -4.08281 2.80414 3.03529 3.29575 3.37078 3.40781 3.64082 4.41551 4.44407 4.53612 4.62716 4.88350 4.98564 5.01015 5.19440 5.32251 5.34450 5.38429 5.45007 5.61248 5.64078 5.67762 5.81502 5.92171 6.05032 6.09731 6.11810 6.19598 6.65837 6.92545 6.94737 7.64714 7.71136 7.96063 8.24164 8.40163 8.99070 9.56051 11.07684 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.052130 B = 0.004308 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.994316 B = 6497.409382 C = 6729.787761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 H 0.090 0.910 4 C 0.069 3.931 5 O -0.383 6.383 6 C 0.066 3.934 7 C -0.174 4.174 8 C 0.089 3.911 9 H 0.084 0.916 10 O -0.357 6.357 11 C 0.455 3.545 12 O -0.506 6.506 13 C -0.104 4.104 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 4.601 -17.910 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 H 0.108 0.892 4 C -0.008 4.008 5 O -0.301 6.301 6 C -0.011 4.011 7 C -0.211 4.211 8 C 0.034 3.966 9 H 0.102 0.898 10 O -0.275 6.275 11 C 0.299 3.701 12 O -0.393 6.393 13 C -0.141 4.141 14 C -0.004 4.004 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.662 4.148 -17.973 18.806 hybrid contribution -0.420 0.097 1.183 1.259 sum 3.242 4.245 -16.790 17.620 Atomic orbital electron populations 1.21746 0.93640 1.02338 1.02749 1.21916 0.97313 1.01515 0.93416 0.89170 1.22678 0.80945 0.99872 0.97336 1.87923 1.20259 1.76396 1.45542 1.22561 0.99447 0.94634 0.84469 1.22639 0.95696 1.03242 0.99569 1.22626 0.94063 0.96765 0.83170 0.89840 1.86629 1.78900 1.42556 1.19400 1.24797 0.73116 0.86960 0.85222 1.90617 1.47597 1.16497 1.84548 1.21763 1.02235 1.01541 0.88581 1.19018 0.98538 0.92712 0.90148 1.21194 1.46563 0.94094 0.94772 0.92257 1.25020 0.95401 0.94812 0.99069 1.70004 1.48803 1.05282 1.28725 0.86490 0.78294 0.79690 0.83245 1.19633 1.20947 1.20950 0.92549 0.91289 0.92116 0.88126 0.92807 0.92737 0.88209 0.90000 0.89914 0.88997 0.89015 0.95626 0.95624 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.08 37.16 0.34 -1.17 16 2 C -0.12 -1.36 2.65 -90.48 -0.24 -1.60 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.07 0.66 6.13 37.20 0.23 0.89 16 5 O -0.38 -4.35 10.77 -35.23 -0.38 -4.73 16 6 C 0.07 0.69 6.84 37.21 0.25 0.95 16 7 C -0.17 -2.18 5.79 -26.59 -0.15 -2.33 16 8 C 0.09 1.24 1.94 -26.55 -0.05 1.19 16 9 H 0.08 1.27 7.15 -51.93 -0.37 0.90 16 10 O -0.36 -5.91 9.37 -39.24 -0.37 -6.28 16 11 C 0.46 8.98 7.94 36.00 0.29 9.26 16 12 O -0.51 -11.44 15.20 -18.75 -0.29 -11.73 16 13 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 14 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 15 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 19 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 34 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -31.94 301.18 -6.62 -38.55 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.81 Total: -2.65 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.03 Total: -7.83 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.03 Total: -22.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.94 -6.62 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122967403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.560 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds