Wall clock time and date at job start Sun Mar 29 2020 22:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.56910 * 2 1 4 4 C 1.53092 * 109.51979 * 239.84612 * 2 1 3 5 5 O 1.42905 * 109.41215 * 182.48223 * 4 2 1 6 6 C 1.42905 * 114.09831 * 61.16158 * 5 4 2 7 7 C 1.53098 * 109.41155 * 298.83847 * 6 5 4 8 8 C 1.53175 * 109.52386 * 120.16108 * 2 1 3 9 9 H 1.08999 * 109.54476 * 57.01959 * 8 2 1 10 10 O 1.45207 * 109.54280 * 296.84023 * 8 2 1 11 11 C 1.34223 * 116.99927 * 149.99811 * 10 8 2 12 12 O 1.20829 * 119.99963 * 0.02562 * 11 10 8 13 13 C 1.50698 * 120.00076 * 179.97438 * 11 10 8 14 14 C 1.52999 * 109.47248 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47248 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00140 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00004 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 120.00079 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46943 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47170 * 120.00119 * 19 17 15 22 22 H 1.48496 * 109.46967 * 240.00209 * 19 17 15 23 23 H 1.08999 * 109.47013 * 180.15598 * 1 2 3 24 24 H 1.09003 * 109.46687 * 300.15305 * 1 2 3 25 25 H 1.08997 * 109.47020 * 60.15285 * 1 2 3 26 26 H 1.08997 * 109.48111 * 62.50365 * 4 2 1 27 27 H 1.08999 * 109.49220 * 302.47275 * 4 2 1 28 28 H 1.09000 * 109.47932 * 58.81878 * 6 5 4 29 29 H 1.08993 * 109.48024 * 178.86013 * 6 5 4 30 30 H 1.08996 * 109.52270 * 297.70307 * 7 6 5 31 31 H 1.08995 * 109.57012 * 177.54155 * 7 6 5 32 32 H 1.09001 * 109.47051 * 300.00144 * 13 11 10 33 33 H 1.08994 * 109.46795 * 60.00409 * 13 11 10 34 34 H 1.08994 * 109.47101 * 300.00324 * 14 13 11 35 35 H 1.09006 * 109.46960 * 59.99941 * 14 13 11 36 36 H 0.97006 * 120.00183 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0416 -0.7248 -1.2477 5 8 3.4694 -0.7742 -1.2164 6 6 4.0044 -1.4816 -0.0959 7 6 3.5717 -0.7871 1.1981 8 6 2.0420 -0.7254 1.2482 9 1 1.6368 -1.7369 1.2740 10 8 1.6220 -0.0034 2.4360 11 6 1.4165 -0.7267 3.5479 12 8 1.5824 -1.9234 3.5294 13 6 0.9798 -0.0461 4.8196 14 6 0.8189 -1.0894 5.9271 15 6 0.3816 -0.4089 7.1986 16 1 0.2329 0.6606 7.2150 17 6 0.1704 -1.1519 8.3406 18 7 0.3510 -2.4544 8.3205 19 14 -0.3723 -0.3085 9.9166 20 1 -0.5027 1.1513 9.6772 21 1 -1.6827 -0.8590 10.3468 22 1 0.6376 -0.5471 10.9788 23 1 -0.3633 -1.0277 0.0028 24 1 -0.3633 0.5162 0.8887 25 1 -0.3633 0.5114 -0.8913 26 1 1.7159 -0.1884 -2.1389 27 1 1.6431 -1.7392 -1.2680 28 1 3.6316 -2.5058 -0.1009 29 1 5.0926 -1.4902 -0.1573 30 1 3.9781 0.2240 1.2223 31 1 3.9418 -1.3492 2.0555 32 1 1.7312 0.6855 5.1165 33 1 0.0277 0.4577 4.6535 34 1 0.0678 -1.8214 5.6303 35 1 1.7713 -1.5930 6.0930 36 1 0.2021 -2.9773 9.1239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122967403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:38 Heat of formation + Delta-G solvation = -179.754812 kcal Electronic energy + Delta-G solvation = -17672.156842 eV Core-core repulsion = 14733.703506 eV Total energy + Delta-G solvation = -2938.453336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.82554 -40.16147 -37.66558 -35.66827 -34.89854 -33.27478 -32.80880 -28.35689 -27.72177 -26.02854 -23.99033 -23.42971 -21.47207 -21.30728 -19.16185 -18.32241 -17.54229 -17.46881 -17.05476 -16.51533 -16.29892 -15.78216 -15.53206 -14.93607 -14.69745 -14.38001 -14.15777 -13.82622 -13.28253 -13.07614 -13.03818 -12.89239 -12.73062 -12.49639 -12.31318 -12.04455 -12.00939 -11.75920 -11.62749 -11.40369 -11.28758 -11.18397 -10.67396 -10.60171 -8.21566 -6.35508 1.20944 1.42720 1.43750 1.56979 1.66229 2.42133 2.83487 3.12503 3.45811 3.55485 3.74432 3.77493 3.88314 4.13666 4.28541 4.35984 4.41049 4.43793 4.49533 4.56723 4.66758 4.73906 4.84610 4.85670 4.95202 4.97029 5.12083 5.25464 5.42511 5.48090 5.52520 5.78746 6.10580 6.11514 6.77287 6.84799 7.35100 8.91361 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.052130 B = 0.004308 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.994316 B = 6497.409382 C = 6729.787761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 H 0.093 0.907 4 C 0.068 3.932 5 O -0.391 6.391 6 C 0.069 3.931 7 C -0.172 4.172 8 C 0.078 3.922 9 H 0.067 0.933 10 O -0.348 6.348 11 C 0.464 3.536 12 O -0.543 6.543 13 C -0.095 4.095 14 C 0.039 3.961 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.974 3.026 20 H -0.254 1.254 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.115 0.885 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 6.618 -18.814 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 H 0.112 0.888 4 C -0.009 4.009 5 O -0.310 6.310 6 C -0.008 4.008 7 C -0.210 4.210 8 C 0.024 3.976 9 H 0.085 0.915 10 O -0.265 6.265 11 C 0.309 3.691 12 O -0.433 6.433 13 C -0.132 4.132 14 C 0.002 3.998 15 C -0.582 4.582 16 H 0.095 0.905 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.798 3.202 20 H -0.177 1.177 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.146 0.854 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.448 6.200 -18.909 20.196 hybrid contribution -0.334 -0.550 1.375 1.518 sum 3.115 5.650 -17.533 18.683 Atomic orbital electron populations 1.21750 0.92984 1.02303 1.03340 1.21948 0.97849 1.01392 0.92290 0.88822 1.22849 0.80168 1.00453 0.97408 1.87920 1.21171 1.76437 1.45427 1.22607 1.00661 0.94326 0.83178 1.22640 0.94531 1.03550 1.00242 1.23023 0.95243 0.96297 0.83064 0.91504 1.86586 1.78374 1.42124 1.19389 1.24511 0.72383 0.86271 0.85906 1.90610 1.49358 1.18059 1.85254 1.21518 1.04295 1.00024 0.87388 1.18791 0.95388 0.93327 0.92311 1.21668 1.46118 0.95048 0.95336 0.90479 1.26092 0.95298 0.95400 1.03298 1.70165 1.50138 1.07290 1.30001 0.85262 0.77665 0.79266 0.77999 1.17696 1.20551 1.20587 0.92918 0.92900 0.89339 0.85400 0.92286 0.92505 0.86228 0.89499 0.91670 0.86778 0.86706 0.99209 0.99231 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.08 71.98 0.65 -2.08 16 2 C -0.12 -2.35 2.65 -10.70 -0.03 -2.38 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.07 1.13 6.13 72.01 0.44 1.57 16 5 O -0.39 -7.97 10.77 -148.98 -1.60 -9.57 16 6 C 0.07 1.36 6.84 72.01 0.49 1.85 16 7 C -0.17 -4.22 5.79 30.69 0.18 -4.04 16 8 C 0.08 2.16 1.94 30.71 0.06 2.22 16 9 H 0.07 2.08 7.15 -2.39 -0.02 2.06 16 10 O -0.35 -11.37 9.37 -51.35 -0.48 -11.85 16 11 C 0.46 18.55 7.94 71.24 0.57 19.11 16 12 O -0.54 -25.58 15.20 21.96 0.33 -25.25 16 13 C -0.10 -3.88 5.75 29.85 0.17 -3.71 16 14 C 0.04 2.13 4.26 29.85 0.13 2.26 16 15 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 18 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 19 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 20 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 1.16 7.79 -2.39 -0.02 1.14 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 33 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 34 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 35 H -0.01 -0.65 8.10 -2.38 -0.02 -0.67 16 36 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -70.33 301.18 4.96 -65.37 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.04 Total: 8.72 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 3.36 Total: -15.15 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.28 Total: -57.98 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -1.75 Total: -46.67 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.33 4.96 -65.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122967403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.385 kcal (2) G-P(sol) polarization free energy of solvation -70.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds