Wall clock time and date at job start Sun Mar 29 2020 23:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47364 * 2 1 4 4 H 1.08997 * 109.47241 * 185.16333 * 3 2 1 5 5 C 1.50698 * 109.46859 * 305.16554 * 3 2 1 6 6 H 1.07998 * 119.99753 * 120.00277 * 5 3 2 7 7 C 1.37877 * 120.00228 * 299.99396 * 5 3 2 8 8 N 1.31518 * 119.99586 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47222 * 90.00351 * 9 7 5 11 11 H 1.48501 * 109.47092 * 210.00101 * 9 7 5 12 12 H 1.48491 * 109.47263 * 329.99959 * 9 7 5 13 13 N 1.46898 * 109.46735 * 65.16546 * 3 2 1 14 14 C 1.46901 * 111.00250 * 85.91744 * 13 3 2 15 15 C 1.53003 * 109.47230 * 174.69024 * 14 13 3 16 16 H 1.09006 * 109.60025 * 305.32140 * 15 14 13 17 17 C 1.53019 * 109.60331 * 184.99867 * 15 14 13 18 18 N 1.46094 * 109.92067 * 191.08060 * 17 15 14 19 19 C 1.33865 * 122.54411 * 18.35582 * 18 17 15 20 20 O 1.21284 * 118.83342 * 178.11547 * 19 18 17 21 21 C 1.50343 * 122.33368 * 358.09481 * 19 18 17 22 22 O 1.42982 * 109.80132 * 15.93789 * 21 19 18 23 23 H 1.09001 * 109.47515 * 174.85019 * 1 2 3 24 24 H 1.09003 * 109.47353 * 294.84372 * 1 2 3 25 25 H 1.08994 * 109.47289 * 54.84307 * 1 2 3 26 26 H 1.09003 * 109.47229 * 240.00441 * 2 1 3 27 27 H 1.08998 * 109.47760 * 120.00467 * 2 1 3 28 28 H 0.97006 * 119.99774 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00213 * 321.95800 * 13 3 2 30 30 H 1.08991 * 109.47115 * 54.68273 * 14 13 3 31 31 H 1.09005 * 109.46631 * 294.68505 * 14 13 3 32 32 H 1.08995 * 109.39434 * 311.21425 * 17 15 14 33 33 H 1.08999 * 109.39181 * 71.03277 * 17 15 14 34 34 H 0.97000 * 118.72200 * 198.38170 * 18 17 15 35 35 H 1.09006 * 109.41716 * 136.02304 * 21 19 18 36 36 H 1.08995 * 109.42055 * 255.88431 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0925 5 6 1.4359 2.1888 -1.1615 6 1 0.8269 3.0628 -0.9837 7 6 1.6610 1.7561 -2.4511 8 7 2.4024 0.6916 -2.6675 9 14 0.9128 2.6816 -3.8908 10 1 1.8549 3.7359 -4.3449 11 1 0.6532 1.7361 -5.0061 12 1 -0.3645 3.3087 -3.4662 13 7 1.6548 2.0980 1.2569 14 6 2.6435 1.8368 2.3115 15 6 2.2798 2.6400 3.5619 16 1 2.1831 3.6946 3.3038 17 6 3.3732 2.4682 4.6185 18 7 2.9184 3.0076 5.8978 19 6 1.6258 3.2270 6.1681 20 8 1.3204 3.6445 7.2651 21 6 0.5394 2.9746 5.1600 22 8 1.0427 2.1581 4.0997 23 1 -0.3634 -1.0235 -0.0922 24 1 -0.3634 0.4318 0.9326 25 1 -0.3633 0.5917 -0.8401 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5604 0.3869 -3.5748 29 1 0.7322 1.8101 1.5469 30 1 3.6328 2.1341 1.9637 31 1 2.6470 0.7734 2.5510 32 1 3.6023 1.4088 4.7334 33 1 4.2700 3.0002 4.3011 34 1 3.5787 3.2152 6.5774 35 1 -0.2937 2.4656 5.6449 36 1 0.1953 3.9251 4.7524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:36 Heat of formation + Delta-G solvation = -83.573859 kcal Electronic energy + Delta-G solvation = -17910.838991 eV Core-core repulsion = 15008.849126 eV Total energy + Delta-G solvation = -2901.989866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54600 -38.00355 -36.32837 -34.85279 -32.97146 -31.23581 -29.47114 -27.46469 -26.45176 -24.52985 -23.18706 -22.06410 -19.70946 -19.31392 -17.72105 -17.33021 -16.34234 -15.78800 -15.54732 -14.91970 -14.71582 -14.52293 -14.07329 -13.66433 -13.30381 -13.02759 -12.75938 -12.44452 -11.94849 -11.76554 -11.41288 -11.35220 -10.90856 -10.66549 -10.54013 -10.50916 -9.97457 -9.80886 -9.55928 -9.51250 -9.29212 -8.99649 -8.35419 -7.26872 -5.98973 -4.00413 2.35773 2.95158 3.32002 3.38926 3.42672 3.67177 4.20577 4.43599 4.60476 4.94514 5.04828 5.17268 5.30667 5.32962 5.43967 5.49620 5.76962 5.99133 6.18496 6.37701 6.39189 6.45335 6.58096 6.86230 6.92797 7.08004 7.24417 7.27766 7.52783 7.69619 7.87065 7.92916 8.26088 8.52866 8.59319 9.05188 9.63355 11.08045 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.042150 B = 0.004933 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.128419 B = 5674.918567 C = 5709.468893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.071 3.929 15 C 0.075 3.925 16 H 0.080 0.920 17 C 0.080 3.920 18 N -0.719 5.719 19 C 0.492 3.508 20 O -0.554 6.554 21 C 0.049 3.951 22 O -0.362 6.362 23 H 0.023 0.977 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.011 0.989 28 H 0.259 0.741 29 H 0.336 0.664 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.400 0.600 35 H 0.128 0.872 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 1.750 11.785 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.315 5.315 14 C -0.060 4.060 15 C 0.016 3.984 16 H 0.098 0.902 17 C -0.045 4.045 18 N -0.372 5.372 19 C 0.278 3.722 20 O -0.433 6.433 21 C -0.031 4.031 22 O -0.280 6.280 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.236 0.764 35 H 0.146 0.854 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.190 2.242 11.767 12.038 hybrid contribution -0.009 -0.290 -0.308 0.424 sum 1.181 1.952 11.459 11.684 Atomic orbital electron populations 1.21595 0.97617 0.98683 1.00894 1.22095 0.95146 1.01007 1.00210 1.19227 0.95890 0.88712 0.85420 0.95008 1.21054 1.30549 1.11484 0.89634 0.92022 1.24909 0.95555 0.95146 0.98739 1.69884 1.39089 1.23933 1.20688 0.86570 0.79613 0.79511 0.82129 1.20859 1.21478 1.19939 1.60796 1.04254 1.63132 1.03273 1.21825 0.97981 0.96590 0.89616 1.22715 0.82689 1.00387 0.92571 0.90209 1.22211 0.98774 1.00268 0.83217 1.45606 1.07854 1.65710 1.17982 1.21169 0.84805 0.76911 0.89284 1.90761 1.82171 1.46552 1.23818 1.22756 0.95007 0.98414 0.86885 1.88247 1.38896 1.50702 1.50194 0.95824 0.95156 0.91295 0.88969 0.97057 0.93128 0.84551 0.89856 0.95082 0.90486 0.89236 0.76428 0.85389 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.40 37.15 0.35 -2.40 16 2 C -0.15 -3.29 5.51 -26.73 -0.15 -3.44 16 3 C 0.22 5.06 2.33 -68.87 -0.16 4.90 16 4 H 0.03 0.82 7.70 -51.93 -0.40 0.42 16 5 C -0.49 -12.76 7.25 -34.44 -0.25 -13.01 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.42 16 8 N -0.90 -24.63 11.38 55.43 0.63 -24.00 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -13.49 6.21 -107.95 -0.67 -14.16 16 14 C 0.07 1.11 5.19 -3.82 -0.02 1.09 16 15 C 0.07 0.96 2.92 -26.72 -0.08 0.88 16 16 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 17 C 0.08 0.80 6.75 -4.25 -0.03 0.77 16 18 N -0.72 -7.65 5.54 -60.92 -0.34 -7.99 16 19 C 0.49 6.38 7.84 -11.56 -0.09 6.28 16 20 O -0.55 -8.96 17.84 5.55 0.10 -8.86 16 21 C 0.05 0.57 6.99 35.83 0.25 0.82 16 22 O -0.36 -4.99 10.16 -35.23 -0.36 -5.35 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.03 0.58 6.63 -51.93 -0.34 0.23 16 25 H 0.07 1.59 6.85 -51.93 -0.36 1.23 16 26 H 0.09 2.36 6.22 -51.93 -0.32 2.04 16 27 H 0.01 0.23 7.50 -51.93 -0.39 -0.16 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.34 6.62 6.36 -39.29 -0.25 6.37 16 30 H 0.08 1.26 7.92 -51.93 -0.41 0.84 16 31 H 0.03 0.50 7.54 -51.93 -0.39 0.11 16 32 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.40 3.61 8.86 -40.82 -0.36 3.25 16 35 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 291.94 15.07 4.40 4.40 Total: -1.00 -29.68 291.94 -6.83 -36.51 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.30 Total: 6.28 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.27 Total: -2.68 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.38 Total: -46.15 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.26 Total: -14.21 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.68 -6.83 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.061 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds