Wall clock time and date at job start Sun Mar 29 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47364 * 2 1 4 4 H 1.08997 * 109.47241 * 185.16333 * 3 2 1 5 5 C 1.50698 * 109.46859 * 305.16554 * 3 2 1 6 6 H 1.07998 * 119.99753 * 120.00277 * 5 3 2 7 7 C 1.37877 * 120.00228 * 299.99396 * 5 3 2 8 8 N 1.31518 * 119.99586 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47222 * 90.00351 * 9 7 5 11 11 H 1.48501 * 109.47092 * 210.00101 * 9 7 5 12 12 H 1.48491 * 109.47263 * 329.99959 * 9 7 5 13 13 N 1.46898 * 109.46735 * 65.16546 * 3 2 1 14 14 C 1.46901 * 111.00250 * 85.91744 * 13 3 2 15 15 C 1.53003 * 109.47230 * 174.69024 * 14 13 3 16 16 H 1.09006 * 109.60025 * 305.32140 * 15 14 13 17 17 C 1.53019 * 109.60331 * 184.99867 * 15 14 13 18 18 N 1.46094 * 109.92067 * 191.08060 * 17 15 14 19 19 C 1.33865 * 122.54411 * 18.35582 * 18 17 15 20 20 O 1.21284 * 118.83342 * 178.11547 * 19 18 17 21 21 C 1.50343 * 122.33368 * 358.09481 * 19 18 17 22 22 O 1.42982 * 109.80132 * 15.93789 * 21 19 18 23 23 H 1.09001 * 109.47515 * 174.85019 * 1 2 3 24 24 H 1.09003 * 109.47353 * 294.84372 * 1 2 3 25 25 H 1.08994 * 109.47289 * 54.84307 * 1 2 3 26 26 H 1.09003 * 109.47229 * 240.00441 * 2 1 3 27 27 H 1.08998 * 109.47760 * 120.00467 * 2 1 3 28 28 H 0.97006 * 119.99774 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00213 * 321.95800 * 13 3 2 30 30 H 1.08991 * 109.47115 * 54.68273 * 14 13 3 31 31 H 1.09005 * 109.46631 * 294.68505 * 14 13 3 32 32 H 1.08995 * 109.39434 * 311.21425 * 17 15 14 33 33 H 1.08999 * 109.39181 * 71.03277 * 17 15 14 34 34 H 0.97000 * 118.72200 * 198.38170 * 18 17 15 35 35 H 1.09006 * 109.41716 * 136.02304 * 21 19 18 36 36 H 1.08995 * 109.42055 * 255.88431 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0925 5 6 1.4359 2.1888 -1.1615 6 1 0.8269 3.0628 -0.9837 7 6 1.6610 1.7561 -2.4511 8 7 2.4024 0.6916 -2.6675 9 14 0.9128 2.6816 -3.8908 10 1 1.8549 3.7359 -4.3449 11 1 0.6532 1.7361 -5.0061 12 1 -0.3645 3.3087 -3.4662 13 7 1.6548 2.0980 1.2569 14 6 2.6435 1.8368 2.3115 15 6 2.2798 2.6400 3.5619 16 1 2.1831 3.6946 3.3038 17 6 3.3732 2.4682 4.6185 18 7 2.9184 3.0076 5.8978 19 6 1.6258 3.2270 6.1681 20 8 1.3204 3.6445 7.2651 21 6 0.5394 2.9746 5.1600 22 8 1.0427 2.1581 4.0997 23 1 -0.3634 -1.0235 -0.0922 24 1 -0.3634 0.4318 0.9326 25 1 -0.3633 0.5917 -0.8401 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5604 0.3869 -3.5748 29 1 0.7322 1.8101 1.5469 30 1 3.6328 2.1341 1.9637 31 1 2.6470 0.7734 2.5510 32 1 3.6023 1.4088 4.7334 33 1 4.2700 3.0002 4.3011 34 1 3.5787 3.2152 6.5774 35 1 -0.2937 2.4656 5.6449 36 1 0.1953 3.9251 4.7524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:35 Heat of formation + Delta-G solvation = -106.717837 kcal Electronic energy + Delta-G solvation = -17911.842589 eV Core-core repulsion = 15008.849126 eV Total energy + Delta-G solvation = -2902.993464 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.53599 -39.15453 -37.94356 -35.79359 -34.63363 -32.91638 -30.84200 -28.55428 -28.08406 -25.89320 -24.90067 -23.23477 -21.15295 -20.65283 -18.74314 -18.36637 -18.02670 -17.06762 -16.72649 -16.58372 -15.88973 -15.70374 -15.31637 -15.15223 -14.54433 -14.46874 -14.24886 -13.90600 -13.59669 -13.06111 -12.86278 -12.74222 -12.57252 -12.38827 -12.26188 -11.79872 -11.61101 -11.50349 -11.35435 -10.92649 -10.50081 -10.37896 -10.20658 -8.88033 -8.01248 -6.08604 1.37235 1.45963 1.48367 1.57198 2.06229 2.49477 2.68760 3.22842 3.28289 3.60573 3.92370 4.11588 4.21871 4.27217 4.47717 4.49930 4.60938 4.63970 4.72096 4.79071 4.84464 4.99998 5.17523 5.42262 5.48478 5.57156 5.74852 5.79576 5.89078 5.93582 6.13332 6.37517 6.73716 6.90346 7.00010 7.04375 7.59105 9.03936 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.042150 B = 0.004933 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.128419 B = 5674.918567 C = 5709.468893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.139 4.139 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.497 4.497 6 H 0.052 0.948 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.687 5.687 14 C 0.071 3.929 15 C 0.079 3.921 16 H 0.078 0.922 17 C 0.086 3.914 18 N -0.709 5.709 19 C 0.489 3.511 20 O -0.592 6.592 21 C 0.050 3.950 22 O -0.379 6.379 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.258 0.742 29 H 0.336 0.664 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.410 0.590 35 H 0.142 0.858 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 2.062 12.482 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.318 5.318 14 C -0.059 4.059 15 C 0.021 3.979 16 H 0.096 0.904 17 C -0.038 4.038 18 N -0.361 5.361 19 C 0.276 3.724 20 O -0.474 6.474 21 C -0.029 4.029 22 O -0.298 6.298 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.247 0.753 35 H 0.159 0.841 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.159 2.556 12.468 12.780 hybrid contribution 0.039 -0.398 -0.502 0.641 sum 1.198 2.158 11.966 12.218 Atomic orbital electron populations 1.21480 0.96243 0.99420 1.00779 1.21955 0.96303 1.00224 0.99360 1.18976 0.93950 0.89223 0.86644 0.97709 1.21293 1.30223 1.11269 0.90851 0.93012 1.25543 0.96012 0.95851 1.00923 1.70005 1.40118 1.25025 1.20931 0.85709 0.78966 0.78389 0.79445 1.20633 1.21408 1.19536 1.60655 1.05162 1.62748 1.03218 1.21866 0.97223 0.97146 0.89661 1.22566 0.83577 0.99476 0.92275 0.90395 1.22219 0.98370 1.01340 0.81876 1.45556 1.07476 1.64625 1.18410 1.21361 0.85639 0.76466 0.88889 1.90748 1.82819 1.48565 1.25250 1.22865 0.94913 0.98967 0.86179 1.88216 1.39366 1.51399 1.50773 0.94218 0.93333 0.93674 0.92075 0.95526 0.93306 0.84490 0.89347 0.95138 0.89549 0.86455 0.75307 0.84070 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.40 71.98 0.68 -4.31 16 2 C -0.14 -6.24 5.51 30.59 0.17 -6.07 16 3 C 0.22 10.36 2.33 44.17 0.10 10.46 16 4 H 0.00 0.26 7.70 -2.39 -0.02 0.24 16 5 C -0.50 -26.06 7.25 25.60 0.19 -25.87 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.01 0.79 5.28 84.65 0.45 1.24 16 8 N -0.92 -51.09 11.38 21.45 0.24 -50.84 16 9 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.69 -26.44 6.21 -495.45 -3.08 -29.52 16 14 C 0.07 2.12 5.19 86.30 0.45 2.57 16 15 C 0.08 1.86 2.92 30.60 0.09 1.95 16 16 H 0.08 1.88 8.10 -2.38 -0.02 1.86 16 17 C 0.09 1.46 6.75 86.46 0.58 2.04 16 18 N -0.71 -13.36 5.54 -465.55 -2.58 -15.94 16 19 C 0.49 11.83 7.84 87.69 0.69 12.52 16 20 O -0.59 -18.51 17.84 -3.04 -0.05 -18.56 16 21 C 0.05 1.07 6.99 71.12 0.50 1.57 16 22 O -0.38 -9.65 10.16 -148.98 -1.51 -11.16 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.78 6.63 -2.39 -0.02 1.76 16 25 H 0.04 2.05 6.85 -2.39 -0.02 2.03 16 26 H 0.06 3.15 6.22 -2.39 -0.01 3.14 16 27 H 0.03 1.08 7.50 -2.39 -0.02 1.06 16 28 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 29 H 0.34 12.81 6.36 -89.69 -0.57 12.24 16 30 H 0.09 2.53 7.92 -2.39 -0.02 2.51 16 31 H 0.03 0.92 7.54 -2.38 -0.02 0.90 16 32 H 0.09 1.37 8.10 -2.39 -0.02 1.35 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.41 6.40 8.86 -92.71 -0.82 5.57 16 35 H 0.14 2.64 8.14 -2.38 -0.02 2.62 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -63.10 291.94 -1.37 -64.47 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.30 Total: 20.66 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 3.89 Total: -3.91 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -5.41 Total: -96.30 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.57 Total: -29.72 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -63.10 -1.37 -64.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.247 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds