Wall clock time and date at job start Sun Mar 29 2020 23:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47008 * 2 1 4 4 H 1.09003 * 109.47221 * 56.50492 * 3 2 1 5 5 C 1.50704 * 109.47023 * 176.50409 * 3 2 1 6 6 H 1.08005 * 119.99625 * 120.00171 * 5 3 2 7 7 C 1.37874 * 119.99918 * 299.72421 * 5 3 2 8 8 N 1.31517 * 119.99800 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00037 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46903 * 90.00096 * 9 7 5 11 11 H 1.48500 * 109.47277 * 210.00317 * 9 7 5 12 12 H 1.48500 * 109.47290 * 330.00544 * 9 7 5 13 13 N 1.46904 * 109.47116 * 296.50334 * 3 2 1 14 14 C 1.47016 * 111.00079 * 171.71425 * 13 3 2 15 15 C 1.53091 * 109.25753 * 182.39198 * 14 13 3 16 16 O 1.43014 * 109.26179 * 303.15031 * 15 14 13 17 17 C 1.43017 * 113.73931 * 58.66828 * 16 15 14 18 18 H 1.08999 * 109.50157 * 61.26894 * 17 16 15 19 19 C 1.50695 * 109.50755 * 181.40080 * 17 16 15 20 20 N 1.34781 * 119.99876 * 185.00198 * 19 17 16 21 21 O 1.21281 * 120.00052 * 4.99464 * 19 17 16 22 22 C 1.47012 * 110.99694 * 295.34697 * 13 3 2 23 23 H 1.08997 * 109.46706 * 185.06595 * 1 2 3 24 24 H 1.08997 * 109.46735 * 305.06605 * 1 2 3 25 25 H 1.08999 * 109.47024 * 65.06189 * 1 2 3 26 26 H 1.08998 * 109.46940 * 240.00117 * 2 1 3 27 27 H 1.09004 * 109.47117 * 119.99860 * 2 1 3 28 28 H 0.97004 * 119.99610 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.50723 * 302.32596 * 14 13 3 30 30 H 1.08994 * 109.50636 * 62.41187 * 14 13 3 31 31 H 1.09001 * 109.50623 * 63.08492 * 15 14 13 32 32 H 1.09007 * 109.50767 * 183.17193 * 15 14 13 33 33 H 0.96993 * 119.99949 * 359.97438 * 20 19 17 34 34 H 0.96998 * 119.99954 * 179.97438 * 20 19 17 35 35 H 1.08997 * 109.51040 * 297.53774 * 22 13 3 36 36 H 1.08992 * 109.51149 * 57.67345 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6264 1.9741 0.8570 5 6 3.5445 1.4434 0.0866 6 1 4.1305 1.8948 -0.7004 7 6 4.1728 0.8729 1.1733 8 7 5.4858 0.8742 1.2491 9 14 3.1591 0.0996 2.5385 10 1 2.9292 -1.3351 2.2323 11 1 3.8890 0.2202 3.8261 12 1 1.8532 0.7990 2.6423 13 7 1.6205 2.1102 -1.2395 14 6 1.9204 3.5486 -1.1906 15 6 1.4144 4.2137 -2.4732 16 8 2.0124 3.5741 -3.6040 17 6 1.7402 2.1724 -3.6832 18 1 0.6656 2.0150 -3.7760 19 6 2.4404 1.5909 -4.8843 20 7 2.2453 0.2998 -5.2185 21 8 3.1793 2.2847 -5.5502 22 6 2.2496 1.4864 -2.4127 23 1 -0.3632 -1.0236 0.0907 24 1 -0.3633 0.5904 0.8411 25 1 -0.3633 0.4333 -0.9318 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.9278 0.4731 2.0139 29 1 1.4240 3.9948 -0.3289 30 1 2.9974 3.6931 -1.1054 31 1 0.3303 4.1157 -2.5308 32 1 1.6845 5.2698 -2.4666 33 1 1.6545 -0.2551 -4.6857 34 1 2.6957 -0.0744 -5.9918 35 1 3.3319 1.5981 -2.3479 36 1 1.9935 0.4275 -2.4432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:25 Heat of formation + Delta-G solvation = -73.054942 kcal Electronic energy + Delta-G solvation = -18769.932796 eV Core-core repulsion = 15868.399065 eV Total energy + Delta-G solvation = -2901.533731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94811 -38.28044 -36.23953 -33.65316 -32.62309 -31.88895 -30.79888 -27.96712 -25.87432 -24.22931 -22.79615 -21.18639 -20.12333 -19.38561 -17.56258 -16.98460 -16.71696 -15.82222 -15.36956 -14.92152 -14.67344 -14.35330 -13.89217 -13.82350 -13.36566 -12.86849 -12.76430 -12.35575 -11.88421 -11.79842 -11.38222 -11.26669 -10.96661 -10.75579 -10.40058 -10.34125 -9.77613 -9.66001 -9.59496 -9.55987 -9.40142 -9.13797 -8.64834 -7.39818 -6.18833 -4.21358 2.77371 3.18279 3.28272 3.29872 3.31767 4.29223 4.34842 4.65676 5.06929 5.14165 5.27492 5.32785 5.55550 5.70604 5.78225 5.85420 5.90265 5.99391 6.08379 6.25352 6.50773 6.56413 6.60658 6.64949 6.76876 6.83964 6.95352 7.06947 7.25687 7.41319 7.51083 7.86251 7.89266 8.35009 8.39951 8.82821 9.42793 10.93661 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.008009 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.149693 B = 3495.081228 C = 3524.184362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.181 3.819 4 H 0.042 0.958 5 C -0.550 4.550 6 H 0.077 0.923 7 C 0.076 3.924 8 N -0.894 5.894 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.264 1.264 13 N -0.521 5.521 14 C 0.020 3.980 15 C 0.066 3.934 16 O -0.363 6.363 17 C 0.076 3.924 18 H 0.084 0.916 19 C 0.529 3.471 20 N -0.853 5.853 21 O -0.527 6.527 22 C 0.034 3.966 23 H 0.034 0.966 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.402 0.598 34 H 0.402 0.598 35 H 0.064 0.936 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.232 -1.309 -6.460 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.060 0.940 5 C -0.589 4.589 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.189 1.189 13 N -0.246 5.246 14 C -0.109 4.109 15 C -0.011 4.011 16 O -0.281 6.281 17 C 0.014 3.986 18 H 0.102 0.898 19 C 0.312 3.688 20 N -0.418 5.418 21 O -0.402 6.402 22 C -0.095 4.095 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.231 0.769 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.026 -0.677 -6.831 12.988 hybrid contribution 0.308 -1.068 1.176 1.618 sum -10.718 -1.745 -5.655 12.243 Atomic orbital electron populations 1.21726 0.97218 0.99332 1.01718 1.21935 0.94096 0.99186 1.00762 1.19758 0.94647 0.90504 0.87707 0.94013 1.21591 0.90273 1.39180 1.07844 0.90463 1.24989 0.94711 0.95281 0.97808 1.69922 1.08081 1.44530 1.30532 0.86854 0.80437 0.79807 0.81162 1.20491 1.22485 1.18875 1.62662 1.56668 1.01899 1.03350 1.22629 1.01132 0.89907 0.97234 1.22765 0.96846 0.96471 0.85066 1.88031 1.75140 1.18749 1.46136 1.21986 0.98949 0.84136 0.93553 0.89841 1.20269 0.81229 0.82022 0.85264 1.43713 1.51976 1.11981 1.34160 1.90737 1.36674 1.59752 1.53004 1.22518 0.99776 0.98379 0.88783 0.94716 0.93732 0.92225 0.92346 0.93323 0.92544 0.90392 0.92533 0.92904 0.88677 0.76908 0.76668 0.91776 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.72 37.16 0.36 -1.96 16 2 C -0.12 -2.42 4.78 -26.73 -0.13 -2.55 16 3 C 0.18 3.95 1.32 -68.86 -0.09 3.86 16 4 H 0.04 0.96 7.11 -51.93 -0.37 0.59 16 5 C -0.55 -14.52 7.71 -34.44 -0.27 -14.79 16 6 H 0.08 2.28 6.04 -52.48 -0.32 1.97 16 7 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 9 Si 0.89 21.06 24.41 -169.99 -4.15 16.91 16 10 H -0.28 -6.43 6.84 56.52 0.39 -6.04 16 11 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -5.96 6.53 56.52 0.37 -5.59 16 13 N -0.52 -9.83 4.17 -227.72 -0.95 -10.78 16 14 C 0.02 0.36 5.41 -3.71 -0.02 0.34 16 15 C 0.07 1.02 7.01 37.20 0.26 1.28 16 16 O -0.36 -6.68 10.01 -55.06 -0.55 -7.23 16 17 C 0.08 1.22 3.22 -27.83 -0.09 1.13 16 18 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.53 8.57 7.45 -10.99 -0.08 8.49 16 20 N -0.85 -9.38 8.84 31.22 0.28 -9.10 16 21 O -0.53 -10.90 17.35 -14.27 -0.25 -11.15 16 22 C 0.03 0.62 4.24 -3.71 -0.02 0.61 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 26 H 0.06 1.12 6.30 -51.93 -0.33 0.79 16 27 H 0.05 1.05 3.26 -51.93 -0.17 0.88 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 30 H 0.06 1.21 7.08 -51.93 -0.37 0.84 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.40 3.31 8.71 -40.82 -0.36 2.96 16 34 H 0.40 3.78 8.93 -40.82 -0.36 3.41 16 35 H 0.06 1.43 6.30 -51.93 -0.33 1.10 16 36 H 0.08 1.34 6.13 -51.93 -0.32 1.02 16 LS Contribution 280.36 15.07 4.23 4.23 Total: -1.00 -32.85 280.36 -5.83 -38.68 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.04 Total: 5.90 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.17 Total: -1.60 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.10 Total: -45.73 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.80 Total: -18.38 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.15 Total: 16.91 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.85 -5.83 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.373 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds