Wall clock time and date at job start Sun Mar 29 2020 23:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47008 * 2 1 4 4 H 1.09003 * 109.47221 * 56.50492 * 3 2 1 5 5 C 1.50704 * 109.47023 * 176.50409 * 3 2 1 6 6 H 1.08005 * 119.99625 * 120.00171 * 5 3 2 7 7 C 1.37874 * 119.99918 * 299.72421 * 5 3 2 8 8 N 1.31517 * 119.99800 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00037 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46903 * 90.00096 * 9 7 5 11 11 H 1.48500 * 109.47277 * 210.00317 * 9 7 5 12 12 H 1.48500 * 109.47290 * 330.00544 * 9 7 5 13 13 N 1.46904 * 109.47116 * 296.50334 * 3 2 1 14 14 C 1.47016 * 111.00079 * 171.71425 * 13 3 2 15 15 C 1.53091 * 109.25753 * 182.39198 * 14 13 3 16 16 O 1.43014 * 109.26179 * 303.15031 * 15 14 13 17 17 C 1.43017 * 113.73931 * 58.66828 * 16 15 14 18 18 H 1.08999 * 109.50157 * 61.26894 * 17 16 15 19 19 C 1.50695 * 109.50755 * 181.40080 * 17 16 15 20 20 N 1.34781 * 119.99876 * 185.00198 * 19 17 16 21 21 O 1.21281 * 120.00052 * 4.99464 * 19 17 16 22 22 C 1.47012 * 110.99694 * 295.34697 * 13 3 2 23 23 H 1.08997 * 109.46706 * 185.06595 * 1 2 3 24 24 H 1.08997 * 109.46735 * 305.06605 * 1 2 3 25 25 H 1.08999 * 109.47024 * 65.06189 * 1 2 3 26 26 H 1.08998 * 109.46940 * 240.00117 * 2 1 3 27 27 H 1.09004 * 109.47117 * 119.99860 * 2 1 3 28 28 H 0.97004 * 119.99610 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.50723 * 302.32596 * 14 13 3 30 30 H 1.08994 * 109.50636 * 62.41187 * 14 13 3 31 31 H 1.09001 * 109.50623 * 63.08492 * 15 14 13 32 32 H 1.09007 * 109.50767 * 183.17193 * 15 14 13 33 33 H 0.96993 * 119.99949 * 359.97438 * 20 19 17 34 34 H 0.96998 * 119.99954 * 179.97438 * 20 19 17 35 35 H 1.08997 * 109.51040 * 297.53774 * 22 13 3 36 36 H 1.08992 * 109.51149 * 57.67345 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6264 1.9741 0.8570 5 6 3.5445 1.4434 0.0866 6 1 4.1305 1.8948 -0.7004 7 6 4.1728 0.8729 1.1733 8 7 5.4858 0.8742 1.2491 9 14 3.1591 0.0996 2.5385 10 1 2.9292 -1.3351 2.2323 11 1 3.8890 0.2202 3.8261 12 1 1.8532 0.7990 2.6423 13 7 1.6205 2.1102 -1.2395 14 6 1.9204 3.5486 -1.1906 15 6 1.4144 4.2137 -2.4732 16 8 2.0124 3.5741 -3.6040 17 6 1.7402 2.1724 -3.6832 18 1 0.6656 2.0150 -3.7760 19 6 2.4404 1.5909 -4.8843 20 7 2.2453 0.2998 -5.2185 21 8 3.1793 2.2847 -5.5502 22 6 2.2496 1.4864 -2.4127 23 1 -0.3632 -1.0236 0.0907 24 1 -0.3633 0.5904 0.8411 25 1 -0.3633 0.4333 -0.9318 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.9278 0.4731 2.0139 29 1 1.4240 3.9948 -0.3289 30 1 2.9974 3.6931 -1.1054 31 1 0.3303 4.1157 -2.5308 32 1 1.6845 5.2698 -2.4666 33 1 1.6545 -0.2551 -4.6857 34 1 2.6957 -0.0744 -5.9918 35 1 3.3319 1.5981 -2.3479 36 1 1.9935 0.4275 -2.4432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:24 Heat of formation + Delta-G solvation = -101.294892 kcal Electronic energy + Delta-G solvation = -18771.157372 eV Core-core repulsion = 15868.399065 eV Total energy + Delta-G solvation = -2902.758307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32044 -39.69756 -37.77839 -34.90205 -34.47991 -33.54709 -32.13292 -29.60224 -27.50135 -25.67458 -24.44671 -22.56283 -21.46080 -21.08371 -18.83502 -18.74724 -18.10434 -17.34741 -16.64068 -16.60123 -16.11856 -15.69141 -15.54049 -15.43162 -14.85014 -14.58772 -14.18639 -13.82752 -13.59229 -13.38325 -12.93962 -12.75224 -12.46686 -12.36587 -12.08741 -11.83126 -11.49362 -11.33152 -11.18771 -10.89173 -10.75733 -10.70686 -10.53819 -9.10715 -8.33029 -6.39287 1.29808 1.35879 1.46240 1.48692 2.12541 2.29309 2.96688 3.02205 3.31782 3.86137 3.94573 4.06796 4.20192 4.27833 4.43290 4.44528 4.55521 4.59606 4.68277 4.85933 4.97065 5.03578 5.11647 5.19803 5.27574 5.45972 5.49315 5.62551 5.82735 6.05316 6.07670 6.23812 6.30956 6.43369 6.69308 7.28498 7.29132 8.83718 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.008009 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.149693 B = 3495.081228 C = 3524.184362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.184 3.816 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.027 0.973 7 C 0.013 3.987 8 N -0.950 5.950 9 Si 0.953 3.047 10 H -0.263 1.263 11 H -0.305 1.305 12 H -0.240 1.240 13 N -0.503 5.503 14 C 0.017 3.983 15 C 0.071 3.929 16 O -0.392 6.392 17 C 0.080 3.920 18 H 0.125 0.875 19 C 0.524 3.476 20 N -0.824 5.824 21 O -0.581 6.581 22 C 0.042 3.958 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.093 0.907 30 H 0.009 0.991 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.420 0.580 34 H 0.414 0.586 35 H 0.009 0.991 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.976 -2.462 -6.486 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.075 3.925 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.045 0.955 7 C -0.185 4.185 8 N -0.590 5.590 9 Si 0.780 3.220 10 H -0.189 1.189 11 H -0.233 1.233 12 H -0.164 1.164 13 N -0.226 5.226 14 C -0.112 4.112 15 C -0.006 4.006 16 O -0.311 6.311 17 C 0.019 3.981 18 H 0.142 0.858 19 C 0.308 3.692 20 N -0.390 5.390 21 O -0.460 6.460 22 C -0.087 4.087 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.027 0.973 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.252 0.748 34 H 0.246 0.754 35 H 0.028 0.972 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.826 -1.875 -6.873 16.449 hybrid contribution 1.529 -0.675 1.111 2.007 sum -13.297 -2.550 -5.762 14.715 Atomic orbital electron populations 1.21652 0.93646 1.01172 1.02627 1.21857 0.97176 0.96715 1.00273 1.19682 0.91117 0.92630 0.89039 0.94398 1.21865 0.92937 1.37297 1.06003 0.95496 1.25909 0.95638 0.96204 1.00713 1.70100 1.10377 1.46808 1.31716 0.85792 0.79444 0.79703 0.77107 1.18918 1.23347 1.16355 1.62713 1.55423 1.02066 1.02414 1.22725 0.98522 0.90042 0.99898 1.22898 0.98355 0.96826 0.82476 1.88015 1.76119 1.19910 1.47010 1.22098 1.00942 0.83025 0.92078 0.85788 1.20424 0.80646 0.83147 0.84988 1.43479 1.51104 1.10301 1.34152 1.90717 1.39043 1.61440 1.54808 1.22474 0.96515 0.99993 0.89762 0.92279 0.93683 0.90670 0.92019 0.94769 0.92684 0.88835 0.97301 0.89604 0.86913 0.74808 0.75375 0.97217 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.72 71.98 0.70 -2.99 16 2 C -0.12 -4.50 4.78 30.59 0.15 -4.36 16 3 C 0.18 7.81 1.32 44.17 0.06 7.87 16 4 H 0.04 1.67 7.11 -2.39 -0.02 1.65 16 5 C -0.54 -29.65 7.71 25.60 0.20 -29.45 16 6 H 0.03 1.71 6.04 -2.91 -0.02 1.70 16 7 C 0.01 0.75 5.45 84.65 0.46 1.21 16 8 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 9 Si 0.95 43.31 24.41 68.60 1.67 44.99 16 10 H -0.26 -11.27 6.84 99.48 0.68 -10.59 16 11 H -0.31 -14.17 7.11 99.48 0.71 -13.47 16 12 H -0.24 -9.88 6.53 99.48 0.65 -9.23 16 13 N -0.50 -18.25 4.17 -874.38 -3.65 -21.90 16 14 C 0.02 0.61 5.41 86.31 0.47 1.08 16 15 C 0.07 2.06 7.01 72.01 0.50 2.56 16 16 O -0.39 -14.10 10.01 -130.02 -1.30 -15.40 16 17 C 0.08 2.44 3.22 29.88 0.10 2.54 16 18 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 19 C 0.52 16.48 7.45 87.65 0.65 17.13 16 20 N -0.82 -16.26 8.84 -173.53 -1.53 -17.79 16 21 O -0.58 -24.30 17.35 15.93 0.28 -24.02 16 22 C 0.04 1.49 4.24 86.32 0.37 1.85 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.84 7.85 -2.39 -0.02 1.83 16 26 H 0.06 2.19 6.30 -2.39 -0.02 2.18 16 27 H 0.03 1.36 3.26 -2.38 -0.01 1.36 16 28 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 29 H 0.09 3.03 8.10 -2.39 -0.02 3.01 16 30 H 0.01 0.39 7.08 -2.39 -0.02 0.37 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 33 H 0.42 5.45 8.71 -92.71 -0.81 4.64 16 34 H 0.41 6.89 8.93 -92.71 -0.83 6.06 16 35 H 0.01 0.45 6.30 -2.39 -0.02 0.43 16 36 H 0.10 3.17 6.13 -2.39 -0.01 3.16 16 Total: -1.00 -76.44 280.36 -1.19 -77.63 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -0.61 Total: 18.00 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 3.65 Total: -2.55 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -4.88 Total: -98.64 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.02 Total: -39.42 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.67 Total: 44.99 kcal Total: -76.44 -1.19 -77.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.662 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds