Wall clock time and date at job start Sun Mar 29 2020 22:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.85705 * 2 1 4 4 C 1.54476 * 110.96818 * 236.16677 * 2 1 3 5 5 N 1.46768 * 105.47356 * 267.29691 * 4 2 1 6 6 C 1.34424 * 111.29731 * 342.98580 * 5 4 2 7 7 O 1.21281 * 124.93604 * 180.42537 * 6 5 4 8 8 C 1.51275 * 110.11780 * 0.40742 * 6 5 4 9 9 H 1.09002 * 110.48465 * 134.92876 * 8 6 5 10 10 N 1.46897 * 110.48653 * 257.57279 * 8 6 5 11 11 C 1.46903 * 111.00038 * 273.54846 * 10 8 6 12 12 C 1.53000 * 109.46996 * 180.02562 * 11 10 8 13 13 H 1.08993 * 109.47611 * 59.99925 * 12 11 10 14 14 O 1.42909 * 109.47022 * 299.99596 * 12 11 10 15 15 C 1.50701 * 109.47089 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99950 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99951 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00297 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99873 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47036 * 119.99545 * 19 17 15 22 22 H 1.48494 * 109.47285 * 239.99434 * 19 17 15 23 23 H 1.08997 * 109.47214 * 296.21416 * 1 2 3 24 24 H 1.09004 * 109.46995 * 56.21223 * 1 2 3 25 25 H 1.08991 * 109.47306 * 176.21297 * 1 2 3 26 26 H 1.09001 * 109.46904 * 183.79235 * 3 2 1 27 27 H 1.09005 * 109.46863 * 303.78595 * 3 2 1 28 28 H 1.08998 * 109.47510 * 63.78467 * 3 2 1 29 29 H 1.09003 * 110.24203 * 148.29876 * 4 2 1 30 30 H 1.08999 * 110.24703 * 26.29524 * 4 2 1 31 31 H 0.96989 * 124.35049 * 163.24961 * 5 4 2 32 32 H 1.00901 * 111.00114 * 37.50029 * 10 8 6 33 33 H 1.08996 * 109.46732 * 299.99634 * 11 10 8 34 34 H 1.08992 * 109.47105 * 60.00233 * 11 10 8 35 35 H 0.96699 * 113.99807 * 300.00135 * 14 12 11 36 36 H 0.97000 * 120.00188 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0748 1.4298 0.0000 4 6 2.0828 -0.8031 -1.1982 5 7 2.2853 -2.1671 -0.6954 6 6 2.2955 -2.1955 0.6485 7 8 2.4523 -3.1926 1.3209 8 6 2.0834 -0.8030 1.2000 9 1 1.3582 -0.8213 2.0137 10 7 3.3570 -0.2317 1.6575 11 6 3.6420 -0.6237 3.0442 12 6 4.9729 -0.0106 3.4843 13 1 4.9118 1.0757 3.4191 14 8 6.0190 -0.4809 2.6318 15 6 5.2656 -0.4133 4.9067 16 1 4.5715 -1.0432 5.4433 17 6 6.4189 0.0233 5.5234 18 7 7.2638 0.7907 4.8702 19 14 6.7813 -0.4753 7.2867 20 1 5.6816 -1.3346 7.7942 21 1 8.0607 -1.2278 7.3354 22 1 6.8896 0.7403 8.1326 23 1 -0.3633 0.4539 0.9219 24 1 -0.3633 0.5715 -0.8541 25 1 -0.3633 -1.0253 -0.0679 26 1 3.1624 1.4042 -0.0680 27 1 1.6701 1.9727 -0.8542 28 1 1.7800 1.9310 0.9219 29 1 3.0303 -0.3794 -1.5313 30 1 1.3617 -0.8056 -2.0155 31 1 2.4009 -2.9470 -1.2602 32 1 4.1132 -0.4966 1.0442 33 1 2.8444 -0.2646 3.6945 34 1 3.7028 -1.7100 3.1095 35 1 6.1309 -1.4413 2.6396 36 1 8.0754 1.0975 5.3039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262304547.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:20 Heat of formation + Delta-G solvation = -91.697404 kcal Electronic energy + Delta-G solvation = -18228.238493 eV Core-core repulsion = 15325.896364 eV Total energy + Delta-G solvation = -2902.342129 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72480 -37.02734 -36.29449 -33.98822 -32.78273 -32.06563 -28.59593 -27.44184 -26.17102 -25.79049 -23.60811 -20.57762 -20.43283 -19.34299 -17.19825 -16.95984 -15.95695 -15.54557 -14.84575 -14.54183 -14.42701 -14.04408 -13.83027 -13.72498 -13.37697 -13.03691 -12.57698 -12.22670 -11.98555 -11.86637 -11.30800 -11.30008 -11.05681 -10.91527 -10.78899 -10.78386 -10.58003 -10.05688 -9.97521 -9.11451 -8.99479 -8.54656 -8.16536 -7.84006 -5.97681 -4.15158 2.66178 3.29897 3.37338 3.37983 3.42417 4.27159 4.33609 4.44725 4.63984 4.80131 5.06161 5.29859 5.30454 5.33931 5.55509 5.56131 5.69835 5.87197 5.97524 6.05595 6.15121 6.23386 6.36894 6.43862 6.60177 6.79985 6.90407 7.00268 7.37195 7.69583 7.80940 7.95515 8.24236 8.31569 8.88090 9.39690 9.61268 11.06764 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036944 B = 0.005734 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.728244 B = 4881.747956 C = 5088.012374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.116 4.116 4 C 0.107 3.893 5 N -0.733 5.733 6 C 0.488 3.512 7 O -0.531 6.531 8 C 0.063 3.937 9 H 0.106 0.894 10 N -0.649 5.649 11 C 0.028 3.972 12 C 0.233 3.767 13 H 0.065 0.935 14 O -0.566 6.566 15 C -0.570 4.570 16 H 0.056 0.944 17 C 0.079 3.921 18 N -0.859 5.859 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.404 0.596 32 H 0.345 0.655 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.342 0.658 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 -0.501 -12.962 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.073 4.073 3 C -0.173 4.173 4 C -0.017 4.017 5 N -0.390 5.390 6 C 0.272 3.728 7 O -0.405 6.405 8 C -0.051 4.051 9 H 0.124 0.876 10 N -0.281 5.281 11 C -0.100 4.100 12 C 0.175 3.825 13 H 0.082 0.918 14 O -0.369 6.369 15 C -0.609 4.609 16 H 0.074 0.926 17 C -0.127 4.127 18 N -0.495 5.495 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.242 0.758 32 H 0.164 0.836 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.186 0.814 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.997 0.439 -12.442 17.290 hybrid contribution 0.437 -2.201 0.721 2.357 sum -11.561 -1.762 -11.721 16.557 Atomic orbital electron populations 1.21803 0.93328 1.01718 1.02574 1.21578 0.95636 0.96889 0.93211 1.21499 1.02117 0.92361 1.01370 1.22288 1.01118 0.81481 0.96849 1.46271 1.74494 1.10384 1.07828 1.22208 0.75431 0.92413 0.82795 1.90750 1.49213 1.37738 1.62829 1.22519 0.96270 0.88554 0.97797 0.87581 1.60839 1.02448 1.59477 1.05294 1.23024 1.01973 0.98355 0.86666 1.19426 0.79876 0.95227 0.87933 0.91769 1.86563 1.58086 1.24115 1.68100 1.21666 1.06938 1.33583 0.98701 0.92586 1.25023 0.95997 0.94112 0.97537 1.70090 1.10511 1.32762 1.36160 0.86611 0.78294 0.78432 0.85015 1.19703 1.20923 1.20869 0.91727 0.91920 0.92884 0.90982 0.93552 0.91571 0.90744 0.90555 0.75797 0.83607 0.91380 0.95159 0.81450 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.48 37.16 0.32 -0.90 16 2 C -0.07 -0.77 0.98 -152.87 -0.15 -0.92 16 3 C -0.12 -1.25 7.91 37.16 0.29 -0.96 16 4 C 0.11 1.00 6.90 -3.12 -0.02 0.98 16 5 N -0.73 -8.52 6.24 -59.20 -0.37 -8.89 16 6 C 0.49 7.73 7.70 -10.86 -0.08 7.65 16 7 O -0.53 -10.81 17.68 5.56 0.10 -10.71 16 8 C 0.06 0.92 2.65 -67.73 -0.18 0.74 16 9 H 0.11 1.61 7.65 -51.93 -0.40 1.21 16 10 N -0.65 -11.23 4.68 -106.74 -0.50 -11.73 16 11 C 0.03 0.60 5.17 -3.82 -0.02 0.58 16 12 C 0.23 5.95 3.10 -27.88 -0.09 5.86 16 13 H 0.06 1.80 8.14 -51.93 -0.42 1.38 16 14 O -0.57 -14.58 12.07 -35.23 -0.43 -15.00 16 15 C -0.57 -15.99 8.76 -34.44 -0.30 -16.29 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.68 12.84 55.43 0.71 -24.97 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.89 7.35 -51.93 -0.38 0.51 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 30 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16 31 H 0.40 4.00 8.96 -40.82 -0.37 3.63 16 32 H 0.34 6.19 7.88 -39.29 -0.31 5.88 16 33 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 34 H 0.03 0.69 7.75 -51.93 -0.40 0.28 16 35 H 0.34 8.11 9.04 45.56 0.41 8.52 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 298.76 15.07 4.50 4.50 Total: -1.00 -32.64 298.76 -6.09 -38.73 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -4.76 Total: 12.61 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.33 Total: -1.10 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.16 Total: -45.59 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.33 Total: -25.71 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.64 -6.09 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262304547.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.970 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds