Wall clock time and date at job start Sun Mar 29 2020 22:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.85705 * 2 1 4 4 C 1.54476 * 110.96818 * 236.16677 * 2 1 3 5 5 N 1.46768 * 105.47356 * 267.29691 * 4 2 1 6 6 C 1.34424 * 111.29731 * 342.98580 * 5 4 2 7 7 O 1.21281 * 124.93604 * 180.42537 * 6 5 4 8 8 C 1.51275 * 110.11780 * 0.40742 * 6 5 4 9 9 H 1.09002 * 110.48465 * 134.92876 * 8 6 5 10 10 N 1.46897 * 110.48653 * 257.57279 * 8 6 5 11 11 C 1.46903 * 111.00038 * 273.54846 * 10 8 6 12 12 C 1.53000 * 109.46996 * 180.02562 * 11 10 8 13 13 H 1.08993 * 109.47611 * 59.99925 * 12 11 10 14 14 O 1.42909 * 109.47022 * 299.99596 * 12 11 10 15 15 C 1.50701 * 109.47089 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99950 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99951 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00297 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99873 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47036 * 119.99545 * 19 17 15 22 22 H 1.48494 * 109.47285 * 239.99434 * 19 17 15 23 23 H 1.08997 * 109.47214 * 296.21416 * 1 2 3 24 24 H 1.09004 * 109.46995 * 56.21223 * 1 2 3 25 25 H 1.08991 * 109.47306 * 176.21297 * 1 2 3 26 26 H 1.09001 * 109.46904 * 183.79235 * 3 2 1 27 27 H 1.09005 * 109.46863 * 303.78595 * 3 2 1 28 28 H 1.08998 * 109.47510 * 63.78467 * 3 2 1 29 29 H 1.09003 * 110.24203 * 148.29876 * 4 2 1 30 30 H 1.08999 * 110.24703 * 26.29524 * 4 2 1 31 31 H 0.96989 * 124.35049 * 163.24961 * 5 4 2 32 32 H 1.00901 * 111.00114 * 37.50029 * 10 8 6 33 33 H 1.08996 * 109.46732 * 299.99634 * 11 10 8 34 34 H 1.08992 * 109.47105 * 60.00233 * 11 10 8 35 35 H 0.96699 * 113.99807 * 300.00135 * 14 12 11 36 36 H 0.97000 * 120.00188 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0748 1.4298 0.0000 4 6 2.0828 -0.8031 -1.1982 5 7 2.2853 -2.1671 -0.6954 6 6 2.2955 -2.1955 0.6485 7 8 2.4523 -3.1926 1.3209 8 6 2.0834 -0.8030 1.2000 9 1 1.3582 -0.8213 2.0137 10 7 3.3570 -0.2317 1.6575 11 6 3.6420 -0.6237 3.0442 12 6 4.9729 -0.0106 3.4843 13 1 4.9118 1.0757 3.4191 14 8 6.0190 -0.4809 2.6318 15 6 5.2656 -0.4133 4.9067 16 1 4.5715 -1.0432 5.4433 17 6 6.4189 0.0233 5.5234 18 7 7.2638 0.7907 4.8702 19 14 6.7813 -0.4753 7.2867 20 1 5.6816 -1.3346 7.7942 21 1 8.0607 -1.2278 7.3354 22 1 6.8896 0.7403 8.1326 23 1 -0.3633 0.4539 0.9219 24 1 -0.3633 0.5715 -0.8541 25 1 -0.3633 -1.0253 -0.0679 26 1 3.1624 1.4042 -0.0680 27 1 1.6701 1.9727 -0.8542 28 1 1.7800 1.9310 0.9219 29 1 3.0303 -0.3794 -1.5313 30 1 1.3617 -0.8056 -2.0155 31 1 2.4009 -2.9470 -1.2602 32 1 4.1132 -0.4966 1.0442 33 1 2.8444 -0.2646 3.6945 34 1 3.7028 -1.7100 3.1095 35 1 6.1309 -1.4413 2.6396 36 1 8.0754 1.0975 5.3039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262304547.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:19 Heat of formation + Delta-G solvation = -119.671860 kcal Electronic energy + Delta-G solvation = -18229.451557 eV Core-core repulsion = 15325.896364 eV Total energy + Delta-G solvation = -2903.555192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.85589 -38.38763 -38.04940 -35.45411 -34.27296 -33.90227 -30.37568 -28.31861 -27.70020 -26.69729 -25.38006 -22.46391 -21.63694 -20.33012 -19.08403 -18.29393 -17.30501 -16.82262 -16.66487 -16.40574 -15.73234 -15.52419 -15.19968 -15.00809 -14.47592 -14.37014 -14.31181 -13.37941 -13.19410 -13.10029 -12.88029 -12.76334 -12.75990 -12.64435 -12.22948 -12.04767 -11.79193 -11.63063 -11.32172 -11.02989 -10.72725 -10.20509 -10.11815 -9.33135 -8.15517 -6.40914 1.38460 1.38936 1.40730 1.52324 2.36946 2.38542 3.08531 3.12822 3.31890 3.55248 3.89294 4.03924 4.21382 4.41965 4.45468 4.51095 4.56440 4.67566 4.82811 4.95479 5.04811 5.10788 5.18745 5.25768 5.40818 5.59828 5.65754 5.70952 5.80637 5.89378 5.97126 6.07694 6.31537 6.70751 7.17303 7.29498 7.47578 8.89306 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036944 B = 0.005734 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.728244 B = 4881.747956 C = 5088.012374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C -0.113 4.113 4 C 0.105 3.895 5 N -0.714 5.714 6 C 0.480 3.520 7 O -0.585 6.585 8 C 0.057 3.943 9 H 0.097 0.903 10 N -0.641 5.641 11 C 0.051 3.949 12 C 0.236 3.764 13 H 0.034 0.966 14 O -0.575 6.575 15 C -0.589 4.589 16 H 0.053 0.947 17 C 0.028 3.972 18 N -0.896 5.896 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.274 1.274 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.415 0.585 32 H 0.342 0.658 33 H 0.068 0.932 34 H 0.013 0.987 35 H 0.350 0.650 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.155 -0.305 -14.205 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 C -0.170 4.170 4 C -0.018 4.018 5 N -0.369 5.369 6 C 0.265 3.735 7 O -0.465 6.465 8 C -0.057 4.057 9 H 0.115 0.885 10 N -0.272 5.272 11 C -0.079 4.079 12 C 0.178 3.822 13 H 0.052 0.948 14 O -0.379 6.379 15 C -0.628 4.628 16 H 0.071 0.929 17 C -0.175 4.175 18 N -0.533 5.533 19 Si 0.784 3.216 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.200 1.200 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.255 0.745 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.194 0.806 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.151 0.652 -13.743 19.033 hybrid contribution 0.760 -2.232 1.011 2.565 sum -12.392 -1.580 -12.732 17.836 Atomic orbital electron populations 1.21802 0.91434 1.02124 1.03697 1.21603 0.96959 0.96340 0.91449 1.21460 1.01018 0.92562 1.01978 1.22550 1.02677 0.79531 0.97026 1.46228 1.72201 1.12017 1.06476 1.22353 0.75148 0.91959 0.84074 1.90717 1.52018 1.39387 1.64343 1.22667 0.94538 0.89086 0.99389 0.88478 1.60793 1.03556 1.59561 1.03246 1.22557 0.99579 0.96621 0.89114 1.19227 0.81818 0.93727 0.87379 0.94778 1.86501 1.58541 1.24858 1.67957 1.22023 1.07163 1.33535 1.00048 0.92866 1.25860 0.95742 0.93939 1.01910 1.70207 1.11062 1.33901 1.38150 0.85509 0.78113 0.78288 0.79646 1.19209 1.20402 1.19986 0.92185 0.89069 0.93057 0.92830 0.90406 0.93148 0.89912 0.86589 0.74509 0.83940 0.91361 0.96912 0.80558 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.48 71.98 0.61 -1.34 16 2 C -0.06 -1.18 0.98 -51.12 -0.05 -1.23 16 3 C -0.11 -2.20 7.91 71.98 0.57 -1.63 16 4 C 0.11 1.60 6.90 86.83 0.60 2.20 16 5 N -0.71 -15.12 6.24 -459.80 -2.87 -17.99 16 6 C 0.48 15.05 7.70 87.89 0.68 15.73 16 7 O -0.59 -24.34 17.68 -3.03 -0.05 -24.40 16 8 C 0.06 1.64 2.65 44.91 0.12 1.76 16 9 H 0.10 2.97 7.65 -2.39 -0.02 2.95 16 10 N -0.64 -22.46 4.68 -491.63 -2.30 -24.76 16 11 C 0.05 2.21 5.17 86.30 0.45 2.66 16 12 C 0.24 12.42 3.10 29.85 0.09 12.51 16 13 H 0.03 2.00 8.14 -2.39 -0.02 1.98 16 14 O -0.58 -30.33 12.07 -148.98 -1.80 -32.13 16 15 C -0.59 -33.65 8.76 25.60 0.22 -33.42 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.03 1.62 5.40 84.65 0.46 2.07 16 18 N -0.90 -54.26 12.84 21.45 0.28 -53.98 16 19 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 1.25 7.35 -2.39 -0.02 1.24 16 27 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.22 7.82 -2.39 -0.02 1.20 16 30 H 0.12 0.98 7.91 -2.39 -0.02 0.96 16 31 H 0.42 7.28 8.96 -92.72 -0.83 6.45 16 32 H 0.34 12.39 7.88 -89.69 -0.71 11.68 16 33 H 0.07 2.94 8.08 -2.39 -0.02 2.92 16 34 H 0.01 0.59 7.75 -2.39 -0.02 0.58 16 35 H 0.35 17.02 9.04 -74.06 -0.67 16.35 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -72.09 298.76 -2.08 -74.17 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -1.11 Total: 33.19 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 3.75 Total: -0.70 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -4.89 Total: -96.73 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -1.85 Total: -56.53 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.09 -2.08 -74.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262304547.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.497 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds