Wall clock time and date at job start Sun Mar 29 2020 23:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47282 * 2 1 4 4 C 1.50694 * 109.47277 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00021 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00190 * 180.02562 * 4 3 2 7 7 C 1.46498 * 120.00210 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.47297 * 179.97438 * 7 6 4 9 9 O 1.42907 * 113.40879 * 313.20168 * 8 7 6 10 10 C 1.53495 * 114.20705 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98548 * 220.34462 * 10 8 7 12 12 C 1.36933 * 136.05515 * 207.08569 * 11 10 8 13 13 H 1.07994 * 120.00522 * 6.49943 * 12 11 10 14 14 C 1.38813 * 119.99615 * 186.49718 * 12 11 10 15 15 N 1.31621 * 119.99986 * 6.13435 * 14 12 11 16 16 Si 1.86800 * 119.99906 * 186.40574 * 14 12 11 17 17 H 1.48501 * 109.47119 * 264.74574 * 16 14 12 18 18 H 1.48504 * 109.47233 * 24.74441 * 16 14 12 19 19 H 1.48503 * 109.47248 * 144.74737 * 16 14 12 20 20 C 1.47066 * 87.88243 * 27.34326 * 11 10 8 21 21 H 1.08997 * 109.47140 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47192 * 300.00434 * 1 2 3 23 23 H 1.09007 * 109.46894 * 60.00101 * 1 2 3 24 24 H 1.08996 * 109.46834 * 239.99972 * 2 1 3 25 25 H 1.08998 * 109.46722 * 119.99836 * 2 1 3 26 26 H 1.09001 * 109.46959 * 59.99517 * 3 2 1 27 27 H 1.09004 * 109.46841 * 300.00253 * 3 2 1 28 28 H 0.97002 * 119.99901 * 359.97438 * 6 4 3 29 29 H 1.09002 * 109.46914 * 60.00291 * 7 6 4 30 30 H 1.08994 * 109.47449 * 299.99888 * 7 6 4 31 31 H 0.96691 * 114.00080 * 46.80502 * 9 8 7 32 32 H 1.09003 * 113.46642 * 105.56186 * 10 8 7 33 33 H 1.08991 * 113.52338 * 335.13845 * 10 8 7 34 34 H 0.97003 * 119.99732 * 180.27038 * 15 14 12 35 35 H 1.08993 * 113.46844 * 87.44082 * 20 11 10 36 36 H 1.09005 * 113.46768 * 217.87931 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3921 0.0015 6 7 4.2209 2.6097 0.0013 7 6 5.6859 2.6097 0.0025 8 6 6.1960 4.0522 0.0023 9 8 5.5396 4.8864 -0.9545 10 6 7.7257 4.1789 0.0029 11 7 7.5813 5.2912 0.9541 12 6 8.3023 6.4084 1.2815 13 1 9.1728 6.6783 0.7021 14 6 7.9143 7.1939 2.3581 15 7 6.9283 6.8022 3.1371 16 14 8.7863 8.8108 2.6969 17 1 9.8570 8.5944 3.7030 18 1 9.3858 9.3231 1.4385 19 1 7.8096 9.8002 3.2186 20 6 6.3252 4.6721 1.4034 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.7360 3.4497 0.0009 29 1 6.0499 2.0959 -0.8873 30 1 6.0486 2.0958 0.8926 31 1 4.5762 4.8043 -0.9526 32 1 8.1365 4.4818 -0.9602 33 1 8.2339 3.3112 0.4234 34 1 6.6545 7.3531 3.8871 35 1 6.4633 3.9342 2.1935 36 1 5.5428 5.3954 1.6334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271236344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:43 Heat of formation + Delta-G solvation = -63.588934 kcal Electronic energy + Delta-G solvation = -17533.269615 eV Core-core repulsion = 14632.146360 eV Total energy + Delta-G solvation = -2901.123254 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21993 -40.16675 -36.63387 -35.33526 -35.14142 -34.09593 -30.65453 -29.03641 -27.21671 -26.54928 -23.97134 -22.61726 -21.39831 -21.00317 -19.03671 -18.44521 -17.33065 -17.18164 -16.85617 -16.40068 -15.85137 -15.51226 -15.45259 -14.95820 -14.56553 -14.38295 -13.93597 -13.90469 -13.52097 -13.08863 -12.80712 -12.78304 -12.64827 -12.53883 -12.23839 -11.99452 -11.79975 -11.58433 -11.40418 -10.97071 -10.83504 -10.69390 -10.12200 -8.97408 -7.96047 -5.27589 1.44718 1.46599 1.56297 1.66827 2.14985 2.45156 3.02176 3.27556 3.32941 3.53300 3.82733 3.91061 4.06314 4.16847 4.37555 4.58907 4.68023 4.74591 4.75877 4.77860 4.81494 4.92012 4.96593 5.12112 5.24274 5.25979 5.32166 5.34658 5.43861 5.51174 5.86663 6.49322 6.81963 6.87320 7.24848 7.55017 8.54604 9.22865 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.045413 B = 0.004473 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.409940 B = 6258.944642 C = 6534.514457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.134 4.134 4 C 0.508 3.492 5 O -0.588 6.588 6 N -0.720 5.720 7 C 0.122 3.878 8 C 0.095 3.905 9 O -0.535 6.535 10 C 0.125 3.875 11 N -0.634 5.634 12 C -0.231 4.231 13 H 0.084 0.916 14 C -0.066 4.066 15 N -0.953 5.953 16 Si 0.982 3.018 17 H -0.285 1.285 18 H -0.268 1.268 19 H -0.291 1.291 20 C 0.142 3.858 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.411 0.589 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.383 0.617 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.250 0.750 35 H 0.027 0.973 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.723 -9.474 -7.338 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.174 4.174 4 C 0.297 3.703 5 O -0.468 6.468 6 N -0.374 5.374 7 C -0.004 4.004 8 C 0.052 3.948 9 O -0.342 6.342 10 C -0.001 4.001 11 N -0.360 5.360 12 C -0.359 4.359 13 H 0.101 0.899 14 C -0.259 4.259 15 N -0.602 5.602 16 Si 0.810 3.190 17 H -0.212 1.212 18 H -0.193 1.193 19 H -0.217 1.217 20 C 0.016 3.984 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.248 0.752 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.233 0.767 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.571 -9.720 -7.311 16.787 hybrid contribution 0.015 1.032 0.819 1.317 sum -11.556 -8.687 -6.492 15.848 Atomic orbital electron populations 1.21760 0.93616 1.02372 1.02756 1.21263 0.96763 0.94781 1.02027 1.21797 0.88340 1.00432 1.06783 1.21500 0.91924 0.82589 0.74260 1.90683 1.71808 1.32806 1.51511 1.45919 1.06627 1.09551 1.75261 1.21573 0.80949 0.95056 1.02815 1.22846 0.94467 0.87665 0.89797 1.86593 1.24149 1.65752 1.57710 1.22617 0.92241 0.91047 0.94165 1.45734 1.24849 1.22000 1.43378 1.19320 1.07975 0.98824 1.09810 0.89863 1.25670 1.00339 1.02991 0.96871 1.70011 1.32115 1.39225 1.18799 0.85010 0.77224 0.78766 0.78001 1.21231 1.19301 1.21732 1.22687 0.89172 0.93565 0.92999 0.92327 0.91868 0.91498 0.92642 0.93104 0.86774 0.86023 0.75171 0.90315 0.91168 0.76734 0.92691 0.91508 0.94142 0.95543 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.11 -1.87 5.22 30.60 0.16 -1.71 16 3 C -0.13 -2.03 5.70 29.85 0.17 -1.86 16 4 C 0.51 12.35 7.83 87.66 0.69 13.04 16 5 O -0.59 -19.57 15.98 -3.05 -0.05 -19.62 16 6 N -0.72 -16.60 5.34 -463.07 -2.47 -19.07 16 7 C 0.12 3.53 5.43 86.38 0.47 3.99 16 8 C 0.10 3.38 1.74 -10.37 -0.02 3.36 16 9 O -0.54 -18.24 13.56 -148.98 -2.02 -20.26 16 10 C 0.13 5.14 8.10 83.17 0.67 5.82 16 11 N -0.63 -33.31 3.76 -738.47 -2.78 -36.09 16 12 C -0.23 -13.34 10.73 84.03 0.90 -12.44 16 13 H 0.08 4.61 7.84 -2.91 -0.02 4.59 16 14 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 15 N -0.95 -57.80 11.80 21.65 0.26 -57.55 16 16 Si 0.98 46.15 29.56 68.60 2.03 48.18 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 C 0.14 6.60 6.66 83.26 0.55 7.15 16 21 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 25 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.41 7.26 6.95 -92.71 -0.64 6.62 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.22 7.89 -2.39 -0.02 2.20 16 31 H 0.38 8.95 7.21 -74.06 -0.53 8.42 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 34 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.03 1.28 7.93 -2.39 -0.02 1.26 16 36 H 0.04 1.91 7.57 -2.38 -0.02 1.89 16 Total: -1.00 -75.43 303.14 -0.36 -75.79 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -0.10 Total: 15.60 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 4.78 Total: 13.01 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -5.00 Total: -112.71 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -2.07 Total: -39.88 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.43 -0.36 -75.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271236344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.204 kcal (2) G-P(sol) polarization free energy of solvation -75.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds