Wall clock time and date at job start Sun Mar 29 2020 23:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47109 * 2 1 4 4 H 1.08996 * 109.46918 * 305.27307 * 3 2 1 5 5 O 1.42898 * 109.46852 * 65.27462 * 3 2 1 6 6 C 1.42902 * 113.99941 * 209.50640 * 5 3 2 7 7 C 1.50700 * 109.46887 * 185.27375 * 3 2 1 8 8 O 1.21282 * 119.99850 * 244.99860 * 7 3 2 9 9 N 1.34772 * 120.00046 * 65.27973 * 7 3 2 10 10 C 1.46498 * 120.00358 * 179.72209 * 9 7 3 11 11 C 1.53950 * 113.74254 * 253.73991 * 10 9 7 12 12 N 1.47812 * 86.03314 * 222.08000 * 11 10 9 13 13 C 1.36939 * 134.45202 * 204.64171 * 12 11 10 14 14 H 1.08000 * 120.00123 * 184.22167 * 13 12 11 15 15 C 1.38808 * 120.00074 * 4.22532 * 13 12 11 16 16 N 1.31620 * 120.00144 * 5.94209 * 15 13 12 17 17 Si 1.86807 * 120.00146 * 185.93952 * 15 13 12 18 18 H 1.48500 * 109.46880 * 94.97860 * 17 15 13 19 19 H 1.48497 * 109.47349 * 214.97951 * 17 15 13 20 20 H 1.48504 * 109.46981 * 334.98256 * 17 15 13 21 21 C 1.47575 * 91.05154 * 24.54727 * 12 11 10 22 22 H 1.09000 * 109.46604 * 294.88768 * 1 2 3 23 23 H 1.08994 * 109.47205 * 54.88882 * 1 2 3 24 24 H 1.09002 * 109.47034 * 174.89221 * 1 2 3 25 25 H 1.09004 * 109.47120 * 240.00221 * 2 1 3 26 26 H 1.08995 * 109.47271 * 120.00195 * 2 1 3 27 27 H 1.08998 * 109.47056 * 184.84520 * 6 5 3 28 28 H 1.09007 * 109.46861 * 304.84667 * 6 5 3 29 29 H 1.08997 * 109.47004 * 64.84234 * 6 5 3 30 30 H 0.97008 * 120.00176 * 359.71666 * 9 7 3 31 31 H 1.09007 * 112.93930 * 25.32587 * 10 9 7 32 32 H 1.08995 * 113.76603 * 336.34579 * 11 10 9 33 33 H 1.09000 * 113.76557 * 107.74313 * 11 10 9 34 34 H 0.97002 * 120.00148 * 180.02562 * 16 15 13 35 35 H 1.09003 * 113.76696 * 221.14342 * 21 12 11 36 36 H 1.09000 * 113.76730 * 89.75571 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6017 1.9828 -0.8390 5 8 1.6675 2.0794 1.2238 6 6 1.4718 3.4902 1.1086 7 6 3.5414 1.4445 -0.1306 8 8 4.2286 1.8598 0.7784 9 7 4.1202 0.9900 -1.2597 10 6 5.5794 0.9975 -1.3891 11 6 6.1123 2.0902 -2.3336 12 7 7.0369 1.0553 -2.8425 13 6 8.2590 1.0810 -3.4599 14 1 8.7106 0.1615 -3.8020 15 6 8.9173 2.2888 -3.6459 16 7 8.4248 3.3935 -3.1271 17 14 10.5025 2.3462 -4.6327 18 1 10.1959 2.7017 -6.0415 19 1 11.4109 3.3668 -4.0511 20 1 11.1607 1.0157 -4.5899 21 6 6.1159 -0.0160 -2.4160 22 1 -0.3632 0.4325 0.9323 23 1 -0.3633 0.5910 -0.8406 24 1 -0.3633 -1.0236 -0.0915 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.2760 3.9115 2.0946 28 1 2.3675 3.9483 0.6891 29 1 0.6226 3.6870 0.4542 30 1 3.5705 0.6577 -1.9867 31 1 6.0914 0.9607 -0.4274 32 1 5.3831 2.4282 -3.0699 33 1 6.6107 2.9113 -1.8185 34 1 8.8846 4.2376 -3.2574 35 1 6.6172 -0.8733 -1.9668 36 1 5.3878 -0.2980 -3.1766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318009521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:09 Heat of formation + Delta-G solvation = -31.450651 kcal Electronic energy + Delta-G solvation = -17701.368789 eV Core-core repulsion = 14801.639155 eV Total energy + Delta-G solvation = -2899.729634 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93253 -38.11987 -36.84974 -34.06450 -33.12964 -31.74702 -28.28274 -27.24008 -25.96064 -24.84123 -23.15223 -22.04659 -20.19513 -19.61776 -17.29296 -16.94122 -16.75785 -15.74748 -15.25242 -14.94134 -14.50939 -14.12045 -14.08191 -13.78083 -13.55824 -12.76061 -12.55386 -12.10467 -11.91066 -11.62930 -11.54459 -11.44167 -11.27082 -10.91568 -10.87844 -10.80095 -10.48301 -10.38547 -10.01417 -9.58530 -9.03028 -8.84756 -8.43287 -6.92596 -5.78248 -3.13973 2.86569 3.31021 3.38798 3.43515 3.45853 3.79687 4.43657 4.70413 4.75727 4.90212 5.08845 5.14414 5.24224 5.38128 5.41078 5.46505 5.55945 5.60914 5.69011 5.74523 5.90329 6.00983 6.07948 6.20239 6.38882 6.54723 6.73810 6.96257 7.22585 7.35849 7.56165 7.87717 7.96364 8.55762 9.00427 9.67530 10.53880 11.37030 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046392 B = 0.004755 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.403640 B = 5887.679206 C = 6270.283286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.073 3.927 4 H 0.084 0.916 5 O -0.359 6.359 6 C 0.030 3.970 7 C 0.485 3.515 8 O -0.528 6.528 9 N -0.715 5.715 10 C 0.093 3.907 11 C 0.146 3.854 12 N -0.606 5.606 13 C -0.226 4.226 14 H 0.082 0.918 15 C -0.006 4.006 16 N -0.916 5.916 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.113 3.887 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.395 0.605 31 H 0.110 0.890 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.255 0.745 35 H 0.049 0.951 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.604 -4.610 3.996 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.011 3.989 4 H 0.102 0.898 5 O -0.276 6.276 6 C -0.067 4.067 7 C 0.270 3.730 8 O -0.403 6.403 9 N -0.367 5.367 10 C -0.012 4.012 11 C 0.019 3.981 12 N -0.333 5.333 13 C -0.354 4.354 14 H 0.099 0.901 15 C -0.203 4.203 16 N -0.563 5.563 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.014 4.014 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.229 0.771 31 H 0.128 0.872 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.810 -4.242 4.734 17.040 hybrid contribution 0.624 0.216 -1.318 1.475 sum -15.185 -4.026 3.415 16.077 Atomic orbital electron populations 1.21723 0.94628 1.01803 1.02390 1.21579 0.97028 0.93112 1.03674 1.22163 0.91494 0.96167 0.89071 0.89826 1.87953 1.88378 1.20711 1.30512 1.22836 0.99758 0.81406 1.02672 1.21314 0.90890 0.78137 0.82706 1.90712 1.64696 1.45560 1.39359 1.46220 1.08705 1.64347 1.17474 1.23892 0.77427 0.99797 1.00061 1.22823 0.89688 0.93733 0.91813 1.45656 1.16103 1.01273 1.70276 1.18994 0.91996 0.93689 1.30709 0.90058 1.24818 0.99037 0.95431 1.01001 1.69840 1.40439 0.98368 1.47636 0.86074 0.82566 0.77368 0.79591 1.21608 1.21596 1.20456 1.22876 0.92124 0.93208 0.93197 0.91906 0.92764 0.92344 0.90032 0.90374 0.89449 0.93394 0.94165 0.77147 0.87222 0.95694 0.89813 0.93541 0.93257 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.76 37.16 0.36 -0.81 16 2 C -0.12 -1.12 5.61 -26.73 -0.15 -1.27 16 3 C 0.07 0.89 2.51 -27.88 -0.07 0.82 16 4 H 0.08 0.83 7.83 -51.93 -0.41 0.43 16 5 O -0.36 -4.92 9.53 -55.09 -0.52 -5.44 16 6 C 0.03 0.34 10.79 101.05 1.09 1.43 16 7 C 0.49 7.92 7.10 -10.99 -0.08 7.84 16 8 O -0.53 -11.16 16.13 -14.30 -0.23 -11.39 16 9 N -0.71 -11.03 5.27 -55.35 -0.29 -11.33 16 10 C 0.09 1.84 4.40 -70.15 -0.31 1.53 16 11 C 0.15 3.52 7.53 -2.84 -0.02 3.50 16 12 N -0.61 -15.67 3.70 -177.90 -0.66 -16.33 16 13 C -0.23 -6.40 10.69 -15.06 -0.16 -6.56 16 14 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -27.60 11.30 55.49 0.63 -26.97 16 17 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.11 2.26 8.69 -2.97 -0.03 2.23 16 22 H 0.06 0.54 7.97 -51.93 -0.41 0.13 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.66 7.78 -51.93 -0.40 0.26 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.39 4.75 8.43 -40.82 -0.34 4.40 16 31 H 0.11 2.42 7.51 -51.92 -0.39 2.03 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 2.32 6.88 -51.93 -0.36 1.96 16 34 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -34.17 305.12 -6.62 -40.79 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.66 Total: 0.43 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 0.54 Total: 8.45 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.32 Total: -54.63 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.76 Total: -16.83 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.17 -6.62 -40.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318009521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.342 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds