Wall clock time and date at job start Sun Mar 29 2020 22:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 110.28545 * 2 1 4 4 N 1.34773 * 120.00266 * 60.67414 * 3 2 1 5 5 O 1.21287 * 120.00397 * 240.67402 * 3 2 1 6 6 C 1.54257 * 110.32776 * 122.12434 * 2 1 3 7 7 C 1.54381 * 105.14978 * 118.84533 * 6 2 1 8 8 N 1.48720 * 104.51692 * 336.27274 * 7 6 2 9 9 C 1.46900 * 111.01831 * 158.96284 * 8 7 6 10 10 C 1.52999 * 109.46697 * 74.48907 * 9 8 7 11 11 H 1.08997 * 109.47144 * 60.00574 * 10 9 8 12 12 O 1.42902 * 109.47682 * 300.00189 * 10 9 8 13 13 C 1.50710 * 109.47025 * 180.02562 * 10 9 8 14 14 H 1.07995 * 119.99931 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99883 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00067 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99558 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47036 * 89.99899 * 17 15 13 19 19 H 1.48507 * 109.46727 * 209.99625 * 17 15 13 20 20 H 1.48495 * 109.47485 * 329.99542 * 17 15 13 21 21 C 1.48567 * 104.28820 * 39.36098 * 8 7 6 22 22 H 1.08999 * 109.46787 * 299.32453 * 1 2 3 23 23 H 1.08998 * 109.47221 * 59.32816 * 1 2 3 24 24 H 1.08996 * 109.46887 * 179.32872 * 1 2 3 25 25 H 0.97004 * 119.99669 * 0.02562 * 4 3 2 26 26 H 0.97001 * 120.00567 * 179.97438 * 4 3 2 27 27 H 1.09002 * 110.32715 * 237.79589 * 6 2 1 28 28 H 1.08998 * 110.32251 * 359.90115 * 6 2 1 29 29 H 1.09004 * 110.40867 * 94.98012 * 7 6 2 30 30 H 1.08996 * 110.41187 * 217.42234 * 7 6 2 31 31 H 1.08997 * 109.47620 * 194.49319 * 9 8 7 32 32 H 1.08999 * 109.47148 * 314.49752 * 9 8 7 33 33 H 0.96703 * 113.99578 * 300.00179 * 12 10 9 34 34 H 0.96994 * 119.99819 * 180.02562 * 16 15 13 35 35 H 1.08999 * 110.41133 * 201.79165 * 21 8 7 36 36 H 1.09004 * 110.50861 * 79.40616 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0525 1.4135 0.0000 4 7 1.7500 2.2438 1.0176 5 8 2.7453 1.8041 -0.9157 6 6 2.0659 -0.7692 1.2250 7 6 2.8802 -1.9430 0.6399 8 7 2.3149 -2.1473 -0.7205 9 6 3.2651 -2.8608 -1.5842 10 6 3.3066 -4.3375 -1.1859 11 1 2.3139 -4.7728 -1.3005 12 8 3.7226 -4.4520 0.1764 13 6 4.2819 -5.0694 -2.0716 14 1 4.8180 -4.5349 -2.8418 15 6 4.4888 -6.4216 -1.8993 16 7 3.8355 -7.0726 -0.9617 17 14 5.6982 -7.3286 -2.9967 18 1 7.0481 -7.2956 -2.3788 19 1 5.2608 -8.7389 -3.1555 20 1 5.7469 -6.6725 -4.3279 21 6 2.0662 -0.7721 -1.2246 22 1 -0.3633 0.5033 0.8960 23 1 -0.3633 0.5242 -0.8839 24 1 -0.3633 -1.0276 -0.0120 25 1 1.1962 1.9314 1.7502 26 1 2.0865 3.1536 1.0178 27 1 2.7082 -0.1249 1.8254 28 1 1.2389 -1.1453 1.8273 29 1 3.9359 -1.6790 0.5767 30 1 2.7469 -2.8382 1.2472 31 1 2.9478 -2.7735 -2.6233 32 1 4.2578 -2.4256 -1.4696 33 1 4.5995 -4.0843 0.3521 34 1 3.9814 -8.0238 -0.8403 35 1 1.3214 -0.7877 -2.0202 36 1 2.9930 -0.3228 -1.5814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333499326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:51 Heat of formation + Delta-G solvation = -91.974385 kcal Electronic energy + Delta-G solvation = -18151.327428 eV Core-core repulsion = 15248.973288 eV Total energy + Delta-G solvation = -2902.354140 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.36190 -37.90488 -35.61919 -33.98164 -32.39841 -32.02632 -29.68900 -27.96720 -25.97936 -24.42133 -22.57255 -21.30778 -20.17331 -19.25213 -17.47355 -16.95148 -16.34880 -15.56055 -14.85416 -14.58181 -14.44920 -14.06118 -14.03253 -13.53579 -13.34449 -12.96840 -12.51729 -12.26364 -11.72675 -11.68341 -11.21286 -10.95267 -10.90171 -10.83641 -10.79007 -10.61432 -10.39695 -10.02115 -9.82207 -9.72780 -8.97332 -8.54062 -8.14932 -7.70985 -5.97095 -4.15018 2.57798 3.30059 3.36959 3.38737 3.40857 4.39104 4.48065 4.66152 4.77223 4.92447 5.14257 5.29944 5.46058 5.52049 5.56050 5.87423 5.92422 5.98467 6.05428 6.14579 6.20219 6.30159 6.35437 6.45538 6.64118 6.68151 6.93160 7.18060 7.42717 7.56432 7.80719 7.98151 8.16794 8.24945 8.88522 9.42230 9.62062 11.07058 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.050270 B = 0.005159 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.854076 B = 5426.165169 C = 5614.338673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C 0.530 3.470 4 N -0.856 5.856 5 O -0.542 6.542 6 C -0.115 4.115 7 C 0.039 3.961 8 N -0.500 5.500 9 C 0.021 3.979 10 C 0.239 3.761 11 H 0.063 0.937 12 O -0.560 6.560 13 C -0.573 4.573 14 H 0.054 0.946 15 C 0.080 3.920 16 N -0.858 5.858 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.046 3.954 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.401 0.599 26 H 0.398 0.602 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.339 0.661 34 H 0.260 0.740 35 H 0.079 0.921 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.923 15.131 6.141 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C 0.315 3.685 4 N -0.419 5.419 5 O -0.418 6.418 6 C -0.153 4.153 7 C -0.089 4.089 8 N -0.224 5.224 9 C -0.107 4.107 10 C 0.181 3.819 11 H 0.081 0.919 12 O -0.362 6.362 13 C -0.611 4.611 14 H 0.072 0.928 15 C -0.126 4.126 16 N -0.494 5.494 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.083 4.083 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.229 0.771 26 H 0.229 0.771 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.182 0.818 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.618 14.398 5.594 16.805 hybrid contribution 1.899 0.519 -0.449 2.019 sum -4.719 14.918 5.145 16.471 Atomic orbital electron populations 1.21800 0.91669 1.03814 1.01399 1.21518 0.97660 0.90983 0.98930 1.20641 0.78977 0.87716 0.81196 1.43857 1.56391 1.16199 1.25503 1.90728 1.38046 1.77243 1.35821 1.22528 1.00350 0.96964 0.95500 1.23255 0.95526 0.98133 0.91976 1.65500 1.42308 1.12327 1.02259 1.23232 0.92086 0.98924 0.96455 1.19338 0.96344 0.86335 0.79889 0.91929 1.86580 1.35245 1.84441 1.29972 1.21656 1.26449 0.94175 1.18858 0.92772 1.25011 0.95405 0.97491 0.94648 1.70083 1.39989 1.08684 1.30665 0.86685 0.81489 0.79102 0.81158 1.20612 1.21116 1.19856 1.23088 1.00747 0.89496 0.94972 0.92661 0.92432 0.90114 0.77055 0.77138 0.91781 0.90089 0.94664 0.87576 0.91405 0.95668 0.81796 0.93053 0.90269 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.13 37.16 0.30 -1.04 16 2 C -0.09 -1.11 0.86 -154.28 -0.13 -1.25 16 3 C 0.53 6.87 6.59 -10.99 -0.07 6.79 16 4 N -0.86 -7.01 8.67 31.22 0.27 -6.74 16 5 O -0.54 -9.40 16.30 5.55 0.09 -9.31 16 6 C -0.12 -1.43 6.21 -25.35 -0.16 -1.59 16 7 C 0.04 0.65 5.28 -2.09 -0.01 0.64 16 8 N -0.50 -9.26 5.34 -229.83 -1.23 -10.49 16 9 C 0.02 0.45 4.62 -3.82 -0.02 0.43 16 10 C 0.24 6.09 3.10 -27.88 -0.09 6.00 16 11 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 12 O -0.56 -14.03 9.95 -35.23 -0.35 -14.38 16 13 C -0.57 -15.89 8.76 -34.43 -0.30 -16.19 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 16 N -0.86 -25.47 12.84 55.43 0.71 -24.76 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.05 0.74 5.33 -2.18 -0.01 0.73 16 22 H 0.05 0.42 7.70 -51.93 -0.40 0.02 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.40 2.18 8.34 -40.82 -0.34 1.84 16 26 H 0.40 2.76 8.93 -40.82 -0.36 2.40 16 27 H 0.06 0.70 7.65 -51.93 -0.40 0.31 16 28 H 0.08 0.89 7.71 -51.93 -0.40 0.49 16 29 H 0.04 0.60 7.75 -51.93 -0.40 0.20 16 30 H 0.11 1.93 6.61 -51.93 -0.34 1.59 16 31 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 32 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 33 H 0.34 7.69 8.95 45.56 0.41 8.10 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 36 H 0.06 1.02 6.80 -51.93 -0.35 0.67 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -32.98 292.86 -6.33 -39.31 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.63 Total: 8.93 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.58 Total: -3.30 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.24 Total: -41.99 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.26 Total: -23.69 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.98 -6.33 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333499326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.666 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds