Wall clock time and date at job start Sun Mar 29 2020 22:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 110.28545 * 2 1 4 4 N 1.34773 * 120.00266 * 60.67414 * 3 2 1 5 5 O 1.21287 * 120.00397 * 240.67402 * 3 2 1 6 6 C 1.54257 * 110.32776 * 122.12434 * 2 1 3 7 7 C 1.54381 * 105.14978 * 118.84533 * 6 2 1 8 8 N 1.48720 * 104.51692 * 336.27274 * 7 6 2 9 9 C 1.46900 * 111.01831 * 158.96284 * 8 7 6 10 10 C 1.52999 * 109.46697 * 74.48907 * 9 8 7 11 11 H 1.08997 * 109.47144 * 60.00574 * 10 9 8 12 12 O 1.42902 * 109.47682 * 300.00189 * 10 9 8 13 13 C 1.50710 * 109.47025 * 180.02562 * 10 9 8 14 14 H 1.07995 * 119.99931 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99883 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00067 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99558 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47036 * 89.99899 * 17 15 13 19 19 H 1.48507 * 109.46727 * 209.99625 * 17 15 13 20 20 H 1.48495 * 109.47485 * 329.99542 * 17 15 13 21 21 C 1.48567 * 104.28820 * 39.36098 * 8 7 6 22 22 H 1.08999 * 109.46787 * 299.32453 * 1 2 3 23 23 H 1.08998 * 109.47221 * 59.32816 * 1 2 3 24 24 H 1.08996 * 109.46887 * 179.32872 * 1 2 3 25 25 H 0.97004 * 119.99669 * 0.02562 * 4 3 2 26 26 H 0.97001 * 120.00567 * 179.97438 * 4 3 2 27 27 H 1.09002 * 110.32715 * 237.79589 * 6 2 1 28 28 H 1.08998 * 110.32251 * 359.90115 * 6 2 1 29 29 H 1.09004 * 110.40867 * 94.98012 * 7 6 2 30 30 H 1.08996 * 110.41187 * 217.42234 * 7 6 2 31 31 H 1.08997 * 109.47620 * 194.49319 * 9 8 7 32 32 H 1.08999 * 109.47148 * 314.49752 * 9 8 7 33 33 H 0.96703 * 113.99578 * 300.00179 * 12 10 9 34 34 H 0.96994 * 119.99819 * 180.02562 * 16 15 13 35 35 H 1.08999 * 110.41133 * 201.79165 * 21 8 7 36 36 H 1.09004 * 110.50861 * 79.40616 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0525 1.4135 0.0000 4 7 1.7500 2.2438 1.0176 5 8 2.7453 1.8041 -0.9157 6 6 2.0659 -0.7692 1.2250 7 6 2.8802 -1.9430 0.6399 8 7 2.3149 -2.1473 -0.7205 9 6 3.2651 -2.8608 -1.5842 10 6 3.3066 -4.3375 -1.1859 11 1 2.3139 -4.7728 -1.3005 12 8 3.7226 -4.4520 0.1764 13 6 4.2819 -5.0694 -2.0716 14 1 4.8180 -4.5349 -2.8418 15 6 4.4888 -6.4216 -1.8993 16 7 3.8355 -7.0726 -0.9617 17 14 5.6982 -7.3286 -2.9967 18 1 7.0481 -7.2956 -2.3788 19 1 5.2608 -8.7389 -3.1555 20 1 5.7469 -6.6725 -4.3279 21 6 2.0662 -0.7721 -1.2246 22 1 -0.3633 0.5033 0.8960 23 1 -0.3633 0.5242 -0.8839 24 1 -0.3633 -1.0276 -0.0120 25 1 1.1962 1.9314 1.7502 26 1 2.0865 3.1536 1.0178 27 1 2.7082 -0.1249 1.8254 28 1 1.2389 -1.1453 1.8273 29 1 3.9359 -1.6790 0.5767 30 1 2.7469 -2.8382 1.2472 31 1 2.9478 -2.7735 -2.6233 32 1 4.2578 -2.4256 -1.4696 33 1 4.5995 -4.0843 0.3521 34 1 3.9814 -8.0238 -0.8403 35 1 1.3214 -0.7877 -2.0202 36 1 2.9930 -0.3228 -1.5814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333499326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:50 Heat of formation + Delta-G solvation = -121.189456 kcal Electronic energy + Delta-G solvation = -18152.594288 eV Core-core repulsion = 15248.973288 eV Total energy + Delta-G solvation = -2903.621000 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47388 -39.27905 -37.39991 -35.06629 -34.25448 -33.56130 -31.01698 -29.68318 -27.33759 -26.02227 -23.75574 -22.91573 -21.84840 -20.25036 -19.03486 -18.35497 -17.42927 -16.91953 -16.66132 -16.27685 -15.84132 -15.76186 -15.46498 -14.77521 -14.61457 -14.45885 -14.05236 -13.41104 -13.25390 -13.08018 -12.85782 -12.77766 -12.73344 -12.34202 -12.15628 -11.93808 -11.87568 -11.66083 -11.02849 -10.82152 -10.70938 -10.67145 -10.09067 -9.30252 -8.13041 -6.38988 1.40369 1.41017 1.52054 1.58201 2.37886 2.49532 3.12559 3.26905 3.41920 3.66773 3.91308 4.17320 4.22319 4.34660 4.42478 4.45015 4.52449 4.69871 4.78465 4.89275 4.93301 5.02415 5.03787 5.16071 5.26705 5.35678 5.62775 5.72502 5.89501 5.98951 6.02843 6.21072 6.43726 6.73117 7.32721 7.33252 7.54064 8.91320 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.050270 B = 0.005159 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.854076 B = 5426.165169 C = 5614.338673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C 0.530 3.470 4 N -0.829 5.829 5 O -0.593 6.593 6 C -0.103 4.103 7 C 0.035 3.965 8 N -0.510 5.510 9 C 0.038 3.962 10 C 0.244 3.756 11 H 0.025 0.975 12 O -0.567 6.567 13 C -0.591 4.591 14 H 0.054 0.946 15 C 0.030 3.970 16 N -0.896 5.896 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.268 1.268 21 C 0.044 3.956 22 H 0.091 0.909 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.419 0.581 26 H 0.409 0.591 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.026 0.974 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.349 0.651 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 16.412 7.067 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C 0.315 3.685 4 N -0.392 5.392 5 O -0.473 6.473 6 C -0.141 4.141 7 C -0.092 4.092 8 N -0.233 5.233 9 C -0.091 4.091 10 C 0.186 3.814 11 H 0.042 0.958 12 O -0.370 6.370 13 C -0.629 4.629 14 H 0.072 0.928 15 C -0.173 4.173 16 N -0.533 5.533 17 Si 0.784 3.216 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.084 4.084 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.251 0.749 26 H 0.241 0.759 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.045 0.955 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.193 0.807 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.982 15.712 6.572 18.407 hybrid contribution 1.968 0.153 -0.685 2.089 sum -5.015 15.865 5.887 17.649 Atomic orbital electron populations 1.21809 0.89401 1.03757 1.03349 1.21449 0.99316 0.90705 0.96979 1.20590 0.78468 0.87969 0.81456 1.43600 1.55194 1.16039 1.24409 1.90721 1.40500 1.78067 1.38048 1.22500 1.00784 0.95404 0.95441 1.23233 0.95881 0.99291 0.90843 1.65409 1.41344 1.13734 1.02832 1.22833 0.92735 0.96797 0.96706 1.19078 0.93948 0.88496 0.79894 0.95752 1.86525 1.35980 1.84870 1.29608 1.22023 1.26798 0.94898 1.19208 0.92761 1.25846 0.97158 0.98336 0.95970 1.70209 1.41612 1.09054 1.32427 0.85571 0.79103 0.77681 0.79272 1.19784 1.20624 1.19231 1.23077 0.99975 0.88447 0.96913 0.88985 0.92341 0.91126 0.74945 0.75918 0.89645 0.87796 0.95544 0.89388 0.91913 0.96008 0.80704 0.92912 0.90236 0.94820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.13 71.98 0.59 -1.65 16 2 C -0.08 -1.90 0.86 -52.03 -0.04 -1.95 16 3 C 0.53 12.60 6.59 87.66 0.58 13.18 16 4 N -0.83 -10.64 8.67 -173.53 -1.50 -12.14 16 5 O -0.59 -20.16 16.30 -3.05 -0.05 -20.21 16 6 C -0.10 -2.31 6.21 31.49 0.20 -2.11 16 7 C 0.04 1.16 5.28 86.42 0.46 1.62 16 8 N -0.51 -19.11 5.34 -881.04 -4.70 -23.81 16 9 C 0.04 1.68 4.62 86.30 0.40 2.08 16 10 C 0.24 12.84 3.10 29.85 0.09 12.93 16 11 H 0.02 1.47 8.14 -2.39 -0.02 1.45 16 12 O -0.57 -29.11 9.95 -148.98 -1.48 -30.59 16 13 C -0.59 -33.37 8.76 25.60 0.22 -33.14 16 14 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 15 C 0.03 1.68 5.40 84.66 0.46 2.14 16 16 N -0.90 -53.98 12.84 21.45 0.28 -53.70 16 17 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 C 0.04 1.45 5.33 86.45 0.46 1.91 16 22 H 0.09 0.97 7.70 -2.39 -0.02 0.95 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.42 2.59 8.34 -92.71 -0.77 1.81 16 26 H 0.41 4.30 8.93 -92.71 -0.83 3.48 16 27 H 0.08 1.58 7.65 -2.39 -0.02 1.56 16 28 H 0.10 1.90 7.71 -2.39 -0.02 1.88 16 29 H 0.03 0.90 7.75 -2.38 -0.02 0.88 16 30 H 0.09 3.21 6.61 -2.39 -0.02 3.20 16 31 H 0.06 2.77 8.08 -2.39 -0.02 2.75 16 32 H 0.02 0.96 7.77 -2.39 -0.02 0.94 16 33 H 0.35 16.20 8.95 -74.06 -0.66 15.53 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.08 2.54 7.86 -2.39 -0.02 2.52 16 36 H 0.03 1.26 6.80 -2.39 -0.02 1.24 16 Total: -1.00 -73.02 292.86 -3.19 -76.21 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -1.16 Total: 23.21 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 3.40 Total: -5.01 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -5.93 Total: -89.66 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -1.53 Total: -50.81 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -73.02 -3.19 -76.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333499326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.976 kcal (2) G-P(sol) polarization free energy of solvation -73.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds