Wall clock time and date at job start Sun Mar 29 2020 22:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.53000 * 109.47075 * 119.99982 * 2 1 3 5 5 C 1.50691 * 113.00105 * 302.86132 * 4 2 1 6 6 O 1.20827 * 120.00017 * 354.43312 * 5 4 2 7 7 O 1.34230 * 119.99994 * 174.43113 * 5 4 2 8 8 C 1.45201 * 117.00300 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46639 * 30.00345 * 8 7 5 10 10 C 1.53002 * 109.47296 * 270.00298 * 8 7 5 11 11 C 1.50696 * 109.47097 * 149.99825 * 8 7 5 12 12 H 1.07994 * 120.00594 * 0.02562 * 11 8 7 13 13 C 1.37883 * 119.99799 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99800 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 119.99880 * 0.02562 * 13 11 8 16 16 H 1.48496 * 109.47232 * 269.99356 * 15 13 11 17 17 H 1.48503 * 109.47156 * 30.00075 * 15 13 11 18 18 H 1.48506 * 109.46651 * 149.99682 * 15 13 11 19 19 C 1.54037 * 113.81312 * 74.68838 * 4 2 1 20 20 O 1.44447 * 85.42810 * 91.80793 * 19 4 2 21 21 C 1.44184 * 93.37701 * 24.08670 * 20 19 4 22 22 H 1.08997 * 109.47093 * 186.42565 * 1 2 3 23 23 H 1.09003 * 109.47161 * 306.42552 * 1 2 3 24 24 H 1.08997 * 109.46880 * 66.42513 * 1 2 3 25 25 H 1.09001 * 109.46974 * 240.00106 * 2 1 3 26 26 H 1.09002 * 109.47400 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47532 * 300.00117 * 3 2 1 28 28 H 1.09001 * 109.47139 * 60.00207 * 3 2 1 29 29 H 1.09004 * 109.46914 * 59.99529 * 10 8 7 30 30 H 1.08996 * 109.47265 * 179.97438 * 10 8 7 31 31 H 1.08996 * 109.46999 * 299.99642 * 10 8 7 32 32 H 0.97006 * 119.99983 * 180.02562 * 14 13 11 33 33 H 1.09001 * 113.86591 * 205.91155 * 19 4 2 34 34 H 1.08997 * 113.86941 * 337.61802 * 19 4 2 35 35 H 1.09004 * 113.86222 * 221.76776 * 21 20 19 36 36 H 1.08993 * 113.98396 * 90.07871 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5267 -0.1152 2.5299 6 8 0.8735 0.9008 2.4981 7 8 1.7950 -0.7041 3.7059 8 6 1.2690 -0.0646 4.8986 9 1 0.3431 0.4557 4.6536 10 6 2.2925 0.9397 5.4323 11 6 0.9952 -1.1093 5.9495 12 1 1.1966 -2.1498 5.7421 13 6 0.4883 -0.7366 7.1765 14 7 0.2498 -1.6483 8.0938 15 14 0.1406 1.0633 7.5357 16 1 1.3504 1.6937 8.1222 17 1 -0.2184 1.7595 6.2740 18 1 -0.9870 1.1673 8.4965 19 6 1.8965 -2.2536 1.1849 20 8 3.2343 -2.2403 0.6404 21 6 3.5597 -0.9727 1.2455 22 1 -0.3633 -1.0212 0.1150 23 1 -0.3634 0.6102 0.8269 24 1 -0.3633 0.4110 -0.9419 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.4906 1.6954 4.6721 30 1 1.8975 1.4202 6.3274 31 1 3.2184 0.4194 5.6773 32 1 -0.1071 -1.3861 8.9569 33 1 1.8228 -2.7310 2.1620 34 1 1.1365 -2.5962 0.4827 35 1 4.1161 -0.3016 0.5911 36 1 3.9954 -1.0558 2.2411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342505976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:21 Heat of formation + Delta-G solvation = -101.004583 kcal Electronic energy + Delta-G solvation = -18663.611205 eV Core-core repulsion = 15728.572735 eV Total energy + Delta-G solvation = -2935.038470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29296 -39.09493 -36.40951 -34.48094 -33.25906 -30.82278 -29.17975 -27.71968 -25.95457 -25.33345 -23.24711 -22.26321 -20.57050 -18.94830 -17.27194 -16.71234 -16.34050 -16.17257 -15.89254 -15.00695 -14.71884 -14.14521 -13.74105 -13.50774 -13.25957 -12.94030 -12.43906 -12.27104 -12.18083 -12.06450 -11.73476 -11.53065 -11.29290 -11.13228 -10.93592 -10.91660 -10.60195 -10.27920 -9.88099 -9.80061 -9.63779 -9.31776 -9.17814 -8.73903 -6.27521 -4.30349 2.58083 3.14299 3.26116 3.27354 3.29789 3.64066 4.21671 4.23189 4.46861 4.96608 5.03381 5.08117 5.27958 5.42088 5.43600 5.47794 5.52280 5.74005 5.82892 5.88716 5.97512 6.01084 6.06629 6.08112 6.11520 6.21884 6.32722 6.39873 6.44920 6.58701 6.97767 7.30379 7.46593 8.16697 8.52625 8.79058 9.29229 10.84494 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.007255 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.706419 B = 3858.254189 C = 4182.254182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.056 4.056 3 C -0.158 4.158 4 C -0.128 4.128 5 C 0.461 3.539 6 O -0.509 6.509 7 O -0.339 6.339 8 C 0.192 3.808 9 H 0.046 0.954 10 C -0.170 4.170 11 C -0.527 4.527 12 H 0.087 0.913 13 C 0.080 3.920 14 N -0.887 5.887 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.263 1.263 18 H -0.289 1.289 19 C 0.057 3.943 20 O -0.376 6.376 21 C 0.058 3.942 22 H 0.051 0.949 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.270 0.730 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 3.559 -14.370 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.075 4.075 3 C -0.215 4.215 4 C -0.129 4.129 5 C 0.304 3.696 6 O -0.398 6.398 7 O -0.255 6.255 8 C 0.138 3.862 9 H 0.064 0.936 10 C -0.227 4.227 11 C -0.564 4.564 12 H 0.105 0.895 13 C -0.123 4.123 14 N -0.524 5.524 15 Si 0.708 3.292 16 H -0.200 1.200 17 H -0.187 1.187 18 H -0.216 1.216 19 C -0.020 4.020 20 O -0.294 6.294 21 C -0.019 4.019 22 H 0.070 0.930 23 H 0.098 0.902 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.616 3.631 -14.288 15.179 hybrid contribution -0.348 1.174 0.594 1.361 sum 3.268 4.805 -13.693 14.875 Atomic orbital electron populations 1.21998 0.94218 1.02283 1.03043 1.20727 0.96732 0.96216 0.93809 1.22000 1.00359 0.95607 1.03507 1.23893 0.98347 0.97918 0.92758 1.23123 0.77481 0.82722 0.86308 1.90505 1.37023 1.24526 1.87773 1.86487 1.70085 1.53750 1.15164 1.20934 0.92751 0.92914 0.79579 0.93628 1.22527 1.01453 0.98751 0.99997 1.20772 1.44371 0.94942 0.96342 0.89471 1.24730 0.94497 0.97620 0.95460 1.69834 1.43578 1.33291 1.05648 0.86975 0.77836 0.85519 0.78866 1.19998 1.18750 1.21630 1.24124 0.85569 0.91559 1.00753 1.89703 1.29648 1.40534 1.69558 1.23993 0.92798 0.85258 0.99837 0.92962 0.90206 0.92557 0.89827 0.93156 0.92523 0.90159 0.94454 0.92503 0.91761 0.92013 0.87959 0.88443 0.88480 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 8.77 37.16 0.33 -1.70 16 2 C -0.06 -0.71 2.29 -90.62 -0.21 -0.92 16 3 C -0.16 -1.92 8.86 37.16 0.33 -1.59 16 4 C -0.13 -1.86 0.53 -154.58 -0.08 -1.94 16 5 C 0.46 8.68 6.66 36.00 0.24 8.92 16 6 O -0.51 -10.42 11.36 -18.75 -0.21 -10.63 16 7 O -0.34 -7.39 9.13 -39.26 -0.36 -7.75 16 8 C 0.19 4.70 2.15 -27.88 -0.06 4.64 16 9 H 0.05 1.18 6.21 -51.93 -0.32 0.86 16 10 C -0.17 -3.78 9.03 37.16 0.34 -3.44 16 11 C -0.53 -14.78 9.48 -34.44 -0.33 -15.11 16 12 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 13 C 0.08 2.27 5.45 -17.82 -0.10 2.18 16 14 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 15 Si 0.88 21.35 24.37 -169.99 -4.14 17.20 16 16 H -0.27 -6.38 6.87 56.52 0.39 -5.99 16 17 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.06 0.78 8.12 37.64 0.31 1.09 16 20 O -0.38 -5.40 12.38 -35.23 -0.44 -5.84 16 21 C 0.06 0.77 8.14 37.64 0.31 1.07 16 22 H 0.05 0.63 7.32 -51.93 -0.38 0.25 16 23 H 0.08 1.24 6.00 -51.93 -0.31 0.92 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 26 H 0.05 0.55 7.03 -51.93 -0.37 0.18 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.19 5.88 -51.93 -0.31 0.89 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.29 3.27 -51.93 -0.17 1.12 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.10 1.53 7.67 -51.93 -0.40 1.13 16 34 H 0.10 1.13 7.45 -51.93 -0.39 0.74 16 35 H 0.10 1.05 7.05 -51.93 -0.37 0.68 16 36 H 0.10 1.31 7.97 -51.93 -0.41 0.89 16 LS Contribution 284.06 15.07 4.28 4.28 Total: -1.00 -30.24 284.06 -4.16 -34.41 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.13 Total: 0.69 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 1.07 Total: -6.81 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.77 Total: -25.56 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.01 Total: -24.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.24 -4.16 -34.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342505976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.598 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds