Wall clock time and date at job start Sun Mar 29 2020 22:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.53000 * 109.47075 * 119.99982 * 2 1 3 5 5 C 1.50691 * 113.00105 * 302.86132 * 4 2 1 6 6 O 1.20827 * 120.00017 * 354.43312 * 5 4 2 7 7 O 1.34230 * 119.99994 * 174.43113 * 5 4 2 8 8 C 1.45201 * 117.00300 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46639 * 30.00345 * 8 7 5 10 10 C 1.53002 * 109.47296 * 270.00298 * 8 7 5 11 11 C 1.50696 * 109.47097 * 149.99825 * 8 7 5 12 12 H 1.07994 * 120.00594 * 0.02562 * 11 8 7 13 13 C 1.37883 * 119.99799 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99800 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 119.99880 * 0.02562 * 13 11 8 16 16 H 1.48496 * 109.47232 * 269.99356 * 15 13 11 17 17 H 1.48503 * 109.47156 * 30.00075 * 15 13 11 18 18 H 1.48506 * 109.46651 * 149.99682 * 15 13 11 19 19 C 1.54037 * 113.81312 * 74.68838 * 4 2 1 20 20 O 1.44447 * 85.42810 * 91.80793 * 19 4 2 21 21 C 1.44184 * 93.37701 * 24.08670 * 20 19 4 22 22 H 1.08997 * 109.47093 * 186.42565 * 1 2 3 23 23 H 1.09003 * 109.47161 * 306.42552 * 1 2 3 24 24 H 1.08997 * 109.46880 * 66.42513 * 1 2 3 25 25 H 1.09001 * 109.46974 * 240.00106 * 2 1 3 26 26 H 1.09002 * 109.47400 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47532 * 300.00117 * 3 2 1 28 28 H 1.09001 * 109.47139 * 60.00207 * 3 2 1 29 29 H 1.09004 * 109.46914 * 59.99529 * 10 8 7 30 30 H 1.08996 * 109.47265 * 179.97438 * 10 8 7 31 31 H 1.08996 * 109.46999 * 299.99642 * 10 8 7 32 32 H 0.97006 * 119.99983 * 180.02562 * 14 13 11 33 33 H 1.09001 * 113.86591 * 205.91155 * 19 4 2 34 34 H 1.08997 * 113.86941 * 337.61802 * 19 4 2 35 35 H 1.09004 * 113.86222 * 221.76776 * 21 20 19 36 36 H 1.08993 * 113.98396 * 90.07871 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5267 -0.1152 2.5299 6 8 0.8735 0.9008 2.4981 7 8 1.7950 -0.7041 3.7059 8 6 1.2690 -0.0646 4.8986 9 1 0.3431 0.4557 4.6536 10 6 2.2925 0.9397 5.4323 11 6 0.9952 -1.1093 5.9495 12 1 1.1966 -2.1498 5.7421 13 6 0.4883 -0.7366 7.1765 14 7 0.2498 -1.6483 8.0938 15 14 0.1406 1.0633 7.5357 16 1 1.3504 1.6937 8.1222 17 1 -0.2184 1.7595 6.2740 18 1 -0.9870 1.1673 8.4965 19 6 1.8965 -2.2536 1.1849 20 8 3.2343 -2.2403 0.6404 21 6 3.5597 -0.9727 1.2455 22 1 -0.3633 -1.0212 0.1150 23 1 -0.3634 0.6102 0.8269 24 1 -0.3633 0.4110 -0.9419 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.4906 1.6954 4.6721 30 1 1.8975 1.4202 6.3274 31 1 3.2184 0.4194 5.6773 32 1 -0.1071 -1.3861 8.9569 33 1 1.8228 -2.7310 2.1620 34 1 1.1365 -2.5962 0.4827 35 1 4.1161 -0.3016 0.5911 36 1 3.9954 -1.0558 2.2411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342505976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:21 Heat of formation + Delta-G solvation = -121.167335 kcal Electronic energy + Delta-G solvation = -18664.485528 eV Core-core repulsion = 15728.572735 eV Total energy + Delta-G solvation = -2935.912792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.54520 -40.57264 -37.98535 -35.66975 -35.27520 -32.76519 -30.38684 -28.72785 -27.37424 -26.98417 -24.80558 -23.40761 -22.22786 -20.43113 -18.91033 -18.43041 -17.90208 -17.41997 -17.11492 -16.70576 -16.25978 -15.34057 -15.09785 -14.80956 -14.65339 -14.53333 -14.30406 -13.92207 -13.69149 -13.15763 -13.07967 -12.87979 -12.82582 -12.49218 -12.22108 -12.20239 -11.97676 -11.68486 -11.66642 -11.59386 -11.25486 -10.85494 -10.78413 -10.68071 -8.46274 -6.55242 1.11508 1.21990 1.29486 1.38648 1.79835 2.17617 2.51681 2.86440 3.08370 3.37888 3.77488 3.94644 4.20872 4.25569 4.28743 4.35375 4.39131 4.44915 4.49982 4.51960 4.72477 4.81140 4.82827 4.85162 4.96053 4.99827 5.02478 5.15447 5.16900 5.32016 5.40009 5.42489 5.72580 6.14229 6.49156 6.86590 7.09950 8.69635 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.007255 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.706419 B = 3858.254189 C = 4182.254182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.053 4.053 3 C -0.156 4.156 4 C -0.125 4.125 5 C 0.457 3.543 6 O -0.524 6.524 7 O -0.352 6.352 8 C 0.195 3.805 9 H 0.031 0.969 10 C -0.164 4.164 11 C -0.540 4.540 12 H 0.047 0.953 13 C 0.031 3.969 14 N -0.929 5.929 15 Si 0.940 3.060 16 H -0.252 1.252 17 H -0.257 1.257 18 H -0.284 1.284 19 C 0.056 3.944 20 O -0.380 6.380 21 C 0.061 3.939 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.275 0.725 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 5.086 -16.204 17.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.071 4.071 3 C -0.213 4.213 4 C -0.126 4.126 5 C 0.300 3.700 6 O -0.414 6.414 7 O -0.268 6.268 8 C 0.141 3.859 9 H 0.049 0.951 10 C -0.221 4.221 11 C -0.578 4.578 12 H 0.065 0.935 13 C -0.169 4.169 14 N -0.567 5.567 15 Si 0.765 3.235 16 H -0.177 1.177 17 H -0.182 1.182 18 H -0.210 1.210 19 C -0.020 4.020 20 O -0.299 6.299 21 C -0.016 4.016 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.128 0.872 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.357 5.157 -16.141 17.496 hybrid contribution -0.590 0.603 1.093 1.381 sum 3.768 5.760 -15.047 16.547 Atomic orbital electron populations 1.21986 0.94619 1.02030 1.02916 1.20832 0.96412 0.96537 0.93353 1.21973 1.01340 0.95066 1.02919 1.24169 0.99385 0.98065 0.91027 1.24052 0.76951 0.82505 0.86454 1.90508 1.37677 1.25358 1.87868 1.86486 1.70318 1.54318 1.15670 1.20601 0.93220 0.92129 0.79963 0.95147 1.22411 1.00765 0.98544 1.00381 1.20954 1.44691 0.94196 0.97917 0.93473 1.25556 0.93975 1.02309 0.95061 1.69958 1.44650 1.35746 1.06392 0.85990 0.78620 0.79902 0.78986 1.17673 1.18162 1.21041 1.24159 0.86231 0.90987 1.00661 1.89703 1.29706 1.41073 1.69435 1.24135 0.91944 0.85214 1.00277 0.92597 0.93403 0.90283 0.87176 0.91618 0.90636 0.93179 0.92288 0.92692 0.91150 0.91536 0.89951 0.85870 0.85323 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.77 71.98 0.63 -3.10 16 2 C -0.05 -1.18 2.29 -10.79 -0.02 -1.21 16 3 C -0.16 -3.36 8.86 71.98 0.64 -2.72 16 4 C -0.13 -3.42 0.53 -52.23 -0.03 -3.45 16 5 C 0.46 17.01 6.66 71.23 0.47 17.48 16 6 O -0.52 -21.34 11.36 21.96 0.25 -21.10 16 7 O -0.35 -15.53 9.13 -51.42 -0.47 -16.00 16 8 C 0.20 9.63 2.15 29.85 0.06 9.70 16 9 H 0.03 1.60 6.21 -2.38 -0.01 1.58 16 10 C -0.16 -7.06 9.03 71.98 0.65 -6.41 16 11 C -0.54 -31.27 9.48 25.60 0.24 -31.03 16 12 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 13 C 0.03 1.77 5.45 84.66 0.46 2.23 16 14 N -0.93 -56.46 13.96 21.45 0.30 -56.16 16 15 Si 0.94 43.69 24.37 68.60 1.67 45.37 16 16 H -0.25 -10.79 6.87 99.48 0.68 -10.11 16 17 H -0.26 -11.66 6.53 99.48 0.65 -11.01 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 C 0.06 1.48 8.12 72.30 0.59 2.07 16 20 O -0.38 -10.07 12.38 -148.98 -1.84 -11.91 16 21 C 0.06 1.47 8.14 72.30 0.59 2.06 16 22 H 0.05 1.24 7.32 -2.39 -0.02 1.23 16 23 H 0.05 1.44 6.00 -2.39 -0.01 1.43 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.11 1.97 8.09 -2.39 -0.02 1.95 16 26 H 0.06 1.19 7.03 -2.39 -0.02 1.17 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.40 5.88 -2.39 -0.01 1.39 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 2.37 3.27 -2.39 -0.01 2.36 16 31 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 33 H 0.08 2.50 7.67 -2.39 -0.02 2.49 16 34 H 0.12 2.58 7.45 -2.39 -0.02 2.56 16 35 H 0.13 2.29 7.05 -2.39 -0.02 2.28 16 36 H 0.09 2.25 7.97 -2.39 -0.02 2.23 16 Total: -1.00 -66.40 284.06 5.18 -61.22 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.99 Total: 12.96 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.28 Total: -14.38 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.30 Total: -56.16 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -2.06 Total: -49.00 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.67 Total: 45.37 kcal Total: -66.40 5.18 -61.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342505976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.952 kcal (2) G-P(sol) polarization free energy of solvation -66.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds