Wall clock time and date at job start Sun Mar 29 2020 22:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46769 * 2 1 4 4 C 1.50699 * 109.47454 * 239.99598 * 2 1 3 5 5 H 1.07997 * 120.00408 * 239.99980 * 4 2 1 6 6 C 1.37881 * 119.99448 * 60.00338 * 4 2 1 7 7 N 1.31512 * 120.00163 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99829 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47037 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46928 * 119.99506 * 8 6 4 11 11 H 1.48491 * 109.47172 * 239.99723 * 8 6 4 12 12 O 1.45207 * 109.46863 * 119.99583 * 2 1 3 13 13 C 1.34221 * 117.00031 * 270.00329 * 12 2 1 14 14 O 1.20829 * 120.00405 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99715 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.47150 * 60.00101 * 15 13 12 17 17 C 1.52998 * 109.47306 * 299.99672 * 15 13 12 18 18 C 1.53002 * 109.46909 * 180.02562 * 15 13 12 19 19 H 1.09004 * 109.99006 * 306.08097 * 18 15 13 20 20 C 1.54106 * 109.87837 * 184.99967 * 18 15 13 21 21 C 1.54807 * 104.18688 * 238.54392 * 20 18 15 22 22 C 1.54994 * 102.09494 * 339.12124 * 21 20 18 23 23 O 1.43739 * 109.88223 * 67.16714 * 18 15 13 24 24 H 1.08995 * 109.47421 * 300.00075 * 1 2 3 25 25 H 1.09003 * 109.46718 * 60.00419 * 1 2 3 26 26 H 1.09003 * 109.46769 * 179.97438 * 1 2 3 27 27 H 0.97006 * 119.99842 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47619 * 179.97438 * 17 15 13 29 29 H 1.09001 * 109.47143 * 300.00755 * 17 15 13 30 30 H 1.09008 * 109.46747 * 60.00281 * 17 15 13 31 31 H 1.08997 * 110.48714 * 357.22053 * 20 18 15 32 32 H 1.09000 * 110.48945 * 119.86925 * 20 18 15 33 33 H 1.09005 * 110.90346 * 97.31858 * 21 20 18 34 34 H 1.09000 * 110.90998 * 220.91594 * 21 20 18 35 35 H 1.08998 * 110.61564 * 278.52047 * 22 21 20 36 36 H 1.08997 * 110.62119 * 155.52521 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 3.1476 -2.2864 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 8 2.0140 -0.6844 1.1857 13 6 2.2170 0.0641 2.2811 14 8 1.9972 1.2518 2.2507 15 6 2.7191 -0.5770 3.5492 16 1 3.6882 -1.0399 3.3633 17 6 1.7242 -1.6440 4.0099 18 6 2.8629 0.4891 4.6373 19 1 3.4852 1.3081 4.2765 20 6 3.4935 -0.1316 5.8990 21 6 2.4445 0.1186 7.0097 22 6 1.6190 1.2898 6.4189 23 8 1.5665 0.9870 5.0082 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7083 1.1608 -3.4844 28 1 2.0875 -2.1080 4.9268 29 1 0.7550 -1.1811 4.1958 30 1 1.6213 -2.4036 3.2349 31 1 3.6534 -1.2007 5.7591 32 1 4.4320 0.3670 6.1413 33 1 1.8191 -0.7616 7.1593 34 1 2.9273 0.4139 7.9413 35 1 2.1251 2.2401 6.5889 36 1 0.6162 1.3062 6.8456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342588291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:43 Heat of formation + Delta-G solvation = -167.889259 kcal Electronic energy + Delta-G solvation = -18140.650948 eV Core-core repulsion = 15202.712141 eV Total energy + Delta-G solvation = -2937.938807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59315 -40.21067 -37.54258 -35.40358 -34.79724 -32.81757 -31.62664 -29.03717 -27.47818 -26.15067 -24.10119 -22.78245 -21.91596 -20.71737 -18.85477 -18.42223 -17.67171 -17.14451 -16.76616 -16.69757 -16.09999 -15.99729 -14.92683 -14.58412 -14.45793 -14.05500 -14.00412 -13.31935 -13.17392 -12.96103 -12.89609 -12.82436 -12.52061 -12.46912 -12.39105 -12.16116 -12.10521 -11.93545 -11.56877 -11.45376 -11.12702 -10.97925 -10.61477 -10.59797 -8.29420 -6.47001 1.40051 1.41625 1.43084 1.56811 2.03191 2.41841 2.96765 3.01141 3.53823 3.75015 3.93868 3.98353 4.07799 4.14887 4.35504 4.44915 4.50507 4.66773 4.75341 4.78617 4.83073 4.86160 4.92199 4.97400 4.99207 5.15974 5.17461 5.26811 5.33748 5.47434 5.61056 5.91533 6.05457 6.11844 6.59688 7.01163 7.25974 8.78882 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.053369 B = 0.005177 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.525495 B = 5407.250153 C = 5592.424663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.217 3.783 3 H 0.002 0.998 4 C -0.547 4.547 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.987 3.013 9 H -0.261 1.261 10 H -0.271 1.271 11 H -0.275 1.275 12 O -0.363 6.363 13 C 0.444 3.556 14 O -0.550 6.550 15 C -0.080 4.080 16 H 0.141 0.859 17 C -0.131 4.131 18 C 0.088 3.912 19 H 0.052 0.948 20 C -0.143 4.143 21 C -0.143 4.143 22 C 0.030 3.970 23 O -0.396 6.396 24 H 0.017 0.983 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.271 0.729 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 -5.203 18.184 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.163 3.837 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.088 0.912 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.810 3.190 9 H -0.185 1.185 10 H -0.196 1.196 11 H -0.201 1.201 12 O -0.279 6.279 13 C 0.289 3.711 14 O -0.441 6.441 15 C -0.099 4.099 16 H 0.159 0.841 17 C -0.188 4.188 18 C 0.030 3.970 19 H 0.070 0.930 20 C -0.180 4.180 21 C -0.181 4.181 22 C -0.046 4.046 23 O -0.316 6.316 24 H 0.036 0.964 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.430 -4.712 17.858 18.994 hybrid contribution 0.033 0.494 -1.064 1.174 sum 4.463 -4.219 16.794 17.882 Atomic orbital electron populations 1.21956 0.97031 1.00281 1.00464 1.20304 0.91893 0.91926 0.79551 0.98046 1.21334 1.33368 1.13874 0.89848 0.91248 1.25903 0.94677 0.95661 1.02322 1.70045 1.36690 1.23832 1.25174 0.85080 0.78353 0.78405 0.77210 1.18493 1.19620 1.20081 1.86463 1.76279 1.43755 1.21439 1.24596 0.74050 0.85819 0.86634 1.90583 1.49682 1.18818 1.84972 1.21501 1.03341 0.97708 0.87307 0.84132 1.21652 0.97796 0.96332 1.02973 1.22637 0.85293 0.94168 0.94937 0.92992 1.23045 0.99602 1.03464 0.91878 1.23120 0.97272 0.98755 0.98906 1.23809 1.02066 0.98278 0.80419 1.89007 1.31794 1.84759 1.25996 0.96418 0.90113 0.93467 0.91997 0.87611 0.93366 0.91757 0.87882 0.88754 0.89578 0.87828 0.92184 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.68 9.33 71.98 0.67 -7.00 16 2 C 0.22 12.59 2.56 29.85 0.08 12.66 16 3 H 0.00 0.11 7.16 -2.39 -0.02 0.10 16 4 C -0.55 -32.05 8.90 25.60 0.23 -31.82 16 5 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -54.45 11.32 21.45 0.24 -54.21 16 8 Si 0.99 43.62 29.54 68.60 2.03 45.65 16 9 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 O -0.36 -18.47 9.77 -51.33 -0.50 -18.97 16 13 C 0.44 20.18 7.13 71.24 0.51 20.68 16 14 O -0.55 -29.14 14.73 26.33 0.39 -28.76 16 15 C -0.08 -2.43 2.53 -11.54 -0.03 -2.46 16 16 H 0.14 3.41 8.14 -2.39 -0.02 3.39 16 17 C -0.13 -3.35 8.70 71.98 0.63 -2.73 16 18 C 0.09 2.42 2.62 30.97 0.08 2.51 16 19 H 0.05 1.64 7.93 -2.39 -0.02 1.62 16 20 C -0.14 -2.27 6.17 31.59 0.19 -2.08 16 21 C -0.14 -1.98 7.15 31.89 0.23 -1.76 16 22 C 0.03 0.64 7.72 72.66 0.56 1.20 16 23 O -0.40 -12.74 9.64 -138.15 -1.33 -14.07 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 4.71 6.07 -2.39 -0.01 4.69 16 26 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 28 H 0.11 1.79 6.73 -2.39 -0.02 1.78 16 29 H 0.05 1.43 7.53 -2.39 -0.02 1.41 16 30 H 0.06 1.74 8.11 -2.38 -0.02 1.72 16 31 H 0.10 1.25 6.59 -2.39 -0.02 1.24 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -74.28 295.81 5.47 -68.81 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.05 Total: 11.12 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 3.59 Total: -9.57 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.24 Total: -54.21 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -1.45 Total: -61.80 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -74.28 5.47 -68.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342588291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.077 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds