Wall clock time and date at job start Sun Mar 29 2020 22:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47441 * 2 1 4 4 C 1.50706 * 109.46831 * 240.00536 * 2 1 3 5 5 H 1.08002 * 119.99735 * 239.99647 * 4 2 1 6 6 C 1.37875 * 120.00426 * 59.99942 * 4 2 1 7 7 N 1.31518 * 119.99316 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00244 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46868 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46810 * 120.00019 * 8 6 4 11 11 H 1.48501 * 109.46821 * 240.00041 * 8 6 4 12 12 O 1.45196 * 109.47329 * 120.00538 * 2 1 3 13 13 C 1.34228 * 117.00058 * 269.99650 * 12 2 1 14 14 O 1.20833 * 119.99787 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00167 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.46862 * 60.00942 * 15 13 12 17 17 C 1.52997 * 109.47466 * 300.00387 * 15 13 12 18 18 C 1.53006 * 109.47239 * 180.02562 * 15 13 12 19 19 H 1.09004 * 109.86765 * 58.99259 * 18 15 13 20 20 C 1.54100 * 109.87983 * 180.02562 * 18 15 13 21 21 C 1.54813 * 104.18597 * 121.45450 * 20 18 15 22 22 C 1.54992 * 102.09397 * 20.88188 * 21 20 18 23 23 O 1.43743 * 109.88023 * 297.83543 * 18 15 13 24 24 H 1.08999 * 109.47362 * 59.99821 * 1 2 3 25 25 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46565 * 299.99561 * 1 2 3 27 27 H 0.97003 * 119.99410 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47153 * 59.99773 * 17 15 13 29 29 H 1.09001 * 109.46832 * 299.99964 * 17 15 13 30 30 H 1.09004 * 109.47261 * 179.97438 * 17 15 13 31 31 H 1.09004 * 110.48627 * 240.13229 * 20 18 15 32 32 H 1.08995 * 110.48558 * 2.77928 * 20 18 15 33 33 H 1.09001 * 110.90176 * 139.08094 * 21 20 18 34 34 H 1.08996 * 110.90938 * 262.67946 * 21 20 18 35 35 H 1.08996 * 110.61947 * 81.47180 * 22 21 20 36 36 H 1.08999 * 110.62060 * 204.47723 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2861 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1854 -4.8162 12 8 2.0140 -0.6846 1.1854 13 6 2.2173 0.0638 2.2810 14 8 1.9975 1.2516 2.2506 15 6 2.7184 -0.5775 3.5493 16 1 3.6873 -1.0410 3.3638 17 6 1.7226 -1.6439 4.0097 18 6 2.8626 0.4885 4.6374 19 1 1.9003 0.9686 4.8155 20 6 3.3755 -0.1574 5.9391 21 6 4.6931 0.5964 6.2431 22 6 4.5130 1.9051 5.4325 23 8 3.8342 1.4687 4.2356 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 0.7080 1.1610 -3.4843 28 1 1.6194 -2.4034 3.2347 29 1 0.7537 -1.1802 4.1952 30 1 2.0853 -2.1080 4.9268 31 1 2.6574 -0.0113 6.7461 32 1 3.5696 -1.2191 5.7874 33 1 4.7831 0.8080 7.3086 34 1 5.5550 0.0329 5.8857 35 1 3.8992 2.6170 5.9843 36 1 5.4815 2.3410 5.1872 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342588305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:49 Heat of formation + Delta-G solvation = -147.832433 kcal Electronic energy + Delta-G solvation = -18076.224376 eV Core-core repulsion = 15139.155298 eV Total energy + Delta-G solvation = -2937.069078 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04410 -38.79873 -35.60243 -33.95746 -33.11540 -31.87833 -29.50382 -27.91446 -25.26930 -24.77581 -22.69590 -21.64388 -20.42622 -19.19884 -17.18148 -16.64258 -16.05356 -15.85817 -15.61150 -14.91737 -14.55320 -14.27427 -13.70252 -13.28298 -13.02786 -12.43399 -12.16575 -12.06946 -11.70408 -11.54089 -11.52277 -11.18333 -11.15653 -10.99239 -10.98709 -10.74740 -10.67385 -10.28823 -10.23130 -9.56225 -9.43228 -9.32814 -8.81679 -8.43618 -6.13002 -4.19372 3.17684 3.26921 3.33282 3.38498 3.69761 3.93157 4.37805 4.46096 4.69968 4.84064 4.96485 5.17450 5.20156 5.26073 5.36178 5.41667 5.57438 5.63202 5.66615 5.75143 5.88907 5.97247 6.01719 6.19096 6.26705 6.71639 6.94555 6.99032 7.04534 7.28285 7.66896 7.80894 8.03411 8.22333 8.75229 8.99751 9.46035 10.94603 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040789 B = 0.005301 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.296195 B = 5280.525175 C = 5374.146585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.518 4.518 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.911 3.089 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 O -0.359 6.359 13 C 0.455 3.545 14 O -0.508 6.508 15 C -0.086 4.086 16 H 0.107 0.893 17 C -0.142 4.142 18 C 0.094 3.906 19 H 0.074 0.926 20 C -0.152 4.152 21 C -0.156 4.156 22 C 0.042 3.958 23 O -0.354 6.354 24 H 0.098 0.902 25 H 0.036 0.964 26 H 0.015 0.985 27 H 0.265 0.735 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -3.138 16.753 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.556 4.556 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.208 1.208 12 O -0.275 6.275 13 C 0.297 3.703 14 O -0.397 6.397 15 C -0.106 4.106 16 H 0.125 0.875 17 C -0.199 4.199 18 C 0.036 3.964 19 H 0.092 0.908 20 C -0.190 4.190 21 C -0.194 4.194 22 C -0.035 4.035 23 O -0.273 6.273 24 H 0.117 0.883 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.155 -2.596 16.321 17.041 hybrid contribution 0.186 -0.269 -0.675 0.750 sum 4.341 -2.865 15.646 16.488 Atomic orbital electron populations 1.22143 0.97698 0.99953 1.01301 1.20592 0.91270 0.93968 0.77987 0.93656 1.21080 1.32214 1.13336 0.88968 0.91338 1.24894 0.95002 0.95117 0.99057 1.69921 1.36251 1.22657 1.23953 0.86232 0.78603 0.79491 0.81881 1.19502 1.20757 1.20772 1.86458 1.76033 1.43668 1.21352 1.23091 0.75231 0.86002 0.85990 1.90614 1.47814 1.16658 1.84596 1.21184 1.01865 0.96507 0.91015 0.87515 1.21760 0.98223 0.97844 1.02110 1.22565 0.93533 0.88447 0.91870 0.90771 1.23072 0.97345 1.01235 0.97329 1.23150 0.98206 0.97176 1.00833 1.23544 0.97502 0.95809 0.86633 1.89087 1.51983 1.57681 1.28535 0.88346 0.94530 0.96619 0.92534 0.90344 0.92056 0.91417 0.90434 0.89855 0.90420 0.90474 0.92384 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.33 37.16 0.35 -3.67 16 2 C 0.21 6.00 2.56 -27.88 -0.07 5.93 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -15.00 8.90 -34.44 -0.31 -15.31 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.96 11.32 55.43 0.63 -25.33 16 8 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 O -0.36 -8.91 9.77 -39.25 -0.38 -9.29 16 13 C 0.46 10.10 7.10 36.00 0.26 10.36 16 14 O -0.51 -12.88 14.60 -24.57 -0.36 -13.24 16 15 C -0.09 -1.37 2.49 -91.77 -0.23 -1.60 16 16 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 17 C -0.14 -1.78 8.86 37.16 0.33 -1.45 16 18 C 0.09 1.36 2.49 -26.15 -0.07 1.29 16 19 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 20 C -0.15 -1.49 6.03 -25.20 -0.15 -1.65 16 21 C -0.16 -1.42 7.15 -24.72 -0.18 -1.60 16 22 C 0.04 0.49 7.72 38.21 0.29 0.79 16 23 O -0.35 -6.00 10.26 -51.73 -0.53 -6.54 16 24 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.62 6.54 -51.93 -0.34 0.28 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.72 6.49 -51.93 -0.34 0.38 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -33.13 296.58 -6.62 -39.74 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.55 Total: -1.05 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 0.13 Total: -5.28 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.63 Total: -25.33 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -1.27 Total: -29.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.13 -6.62 -39.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342588305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.088 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds