Wall clock time and date at job start Sun Mar 29 2020 22:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47441 * 2 1 4 4 C 1.50706 * 109.46831 * 240.00536 * 2 1 3 5 5 H 1.08002 * 119.99735 * 239.99647 * 4 2 1 6 6 C 1.37875 * 120.00426 * 59.99942 * 4 2 1 7 7 N 1.31518 * 119.99316 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00244 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46868 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46810 * 120.00019 * 8 6 4 11 11 H 1.48501 * 109.46821 * 240.00041 * 8 6 4 12 12 O 1.45196 * 109.47329 * 120.00538 * 2 1 3 13 13 C 1.34228 * 117.00058 * 269.99650 * 12 2 1 14 14 O 1.20833 * 119.99787 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00167 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.46862 * 60.00942 * 15 13 12 17 17 C 1.52997 * 109.47466 * 300.00387 * 15 13 12 18 18 C 1.53006 * 109.47239 * 180.02562 * 15 13 12 19 19 H 1.09004 * 109.86765 * 58.99259 * 18 15 13 20 20 C 1.54100 * 109.87983 * 180.02562 * 18 15 13 21 21 C 1.54813 * 104.18597 * 121.45450 * 20 18 15 22 22 C 1.54992 * 102.09397 * 20.88188 * 21 20 18 23 23 O 1.43743 * 109.88023 * 297.83543 * 18 15 13 24 24 H 1.08999 * 109.47362 * 59.99821 * 1 2 3 25 25 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46565 * 299.99561 * 1 2 3 27 27 H 0.97003 * 119.99410 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47153 * 59.99773 * 17 15 13 29 29 H 1.09001 * 109.46832 * 299.99964 * 17 15 13 30 30 H 1.09004 * 109.47261 * 179.97438 * 17 15 13 31 31 H 1.09004 * 110.48627 * 240.13229 * 20 18 15 32 32 H 1.08995 * 110.48558 * 2.77928 * 20 18 15 33 33 H 1.09001 * 110.90176 * 139.08094 * 21 20 18 34 34 H 1.08996 * 110.90938 * 262.67946 * 21 20 18 35 35 H 1.08996 * 110.61947 * 81.47180 * 22 21 20 36 36 H 1.08999 * 110.62060 * 204.47723 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2861 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1854 -4.8162 12 8 2.0140 -0.6846 1.1854 13 6 2.2173 0.0638 2.2810 14 8 1.9975 1.2516 2.2506 15 6 2.7184 -0.5775 3.5493 16 1 3.6873 -1.0410 3.3638 17 6 1.7226 -1.6439 4.0097 18 6 2.8626 0.4885 4.6374 19 1 1.9003 0.9686 4.8155 20 6 3.3755 -0.1574 5.9391 21 6 4.6931 0.5964 6.2431 22 6 4.5130 1.9051 5.4325 23 8 3.8342 1.4687 4.2356 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 0.7080 1.1610 -3.4843 28 1 1.6194 -2.4034 3.2347 29 1 0.7537 -1.1802 4.1952 30 1 2.0853 -2.1080 4.9268 31 1 2.6574 -0.0113 6.7461 32 1 3.5696 -1.2191 5.7874 33 1 4.7831 0.8080 7.3086 34 1 5.5550 0.0329 5.8857 35 1 3.8992 2.6170 5.9843 36 1 5.4815 2.3410 5.1872 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342588305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:49 Heat of formation + Delta-G solvation = -168.662507 kcal Electronic energy + Delta-G solvation = -18077.127635 eV Core-core repulsion = 15139.155298 eV Total energy + Delta-G solvation = -2937.972337 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56940 -40.18420 -37.54424 -35.45860 -35.02643 -32.79840 -31.63264 -28.89542 -27.47748 -26.07448 -24.03935 -22.97367 -21.82393 -20.78901 -18.92733 -18.52451 -17.63473 -17.12696 -16.87432 -16.73020 -16.14434 -15.84426 -14.87853 -14.53423 -14.42947 -14.05662 -14.02049 -13.31205 -13.24935 -13.06172 -12.89054 -12.82107 -12.63224 -12.42074 -12.36559 -12.15915 -12.11531 -11.95070 -11.58585 -11.47183 -11.13249 -10.97380 -10.64237 -10.60783 -8.29840 -6.47213 1.39686 1.41569 1.42516 1.56166 2.02882 2.41253 2.92647 3.00570 3.54447 3.70938 3.90994 3.96126 4.12757 4.15457 4.33020 4.43188 4.51265 4.60307 4.74873 4.78005 4.81469 4.83953 4.86514 4.96528 5.01163 5.14977 5.16971 5.24309 5.29161 5.47519 5.61881 5.92045 6.04599 6.12085 6.59274 7.01586 7.25791 8.78462 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040789 B = 0.005301 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.296195 B = 5280.525175 C = 5374.146585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.216 3.784 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.067 0.933 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.986 3.014 9 H -0.262 1.262 10 H -0.269 1.269 11 H -0.276 1.276 12 O -0.363 6.363 13 C 0.444 3.556 14 O -0.547 6.547 15 C -0.079 4.079 16 H 0.120 0.880 17 C -0.136 4.136 18 C 0.088 3.912 19 H 0.057 0.943 20 C -0.142 4.142 21 C -0.146 4.146 22 C 0.029 3.971 23 O -0.403 6.403 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.020 0.980 27 H 0.271 0.729 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.090 -5.099 18.113 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.162 3.838 3 H 0.017 0.983 4 C -0.585 4.585 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.809 3.191 9 H -0.186 1.186 10 H -0.194 1.194 11 H -0.201 1.201 12 O -0.280 6.280 13 C 0.288 3.712 14 O -0.438 6.438 15 C -0.098 4.098 16 H 0.138 0.862 17 C -0.193 4.193 18 C 0.030 3.970 19 H 0.075 0.925 20 C -0.179 4.179 21 C -0.183 4.183 22 C -0.047 4.047 23 O -0.323 6.323 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.952 -4.563 17.715 18.951 hybrid contribution -0.048 0.451 -1.049 1.143 sum 4.904 -4.112 16.666 17.853 Atomic orbital electron populations 1.21949 0.96653 1.00439 1.00624 1.20307 0.92103 0.91803 0.79537 0.98311 1.21335 1.33362 1.13841 0.89965 0.91437 1.25894 0.94688 0.95673 1.02291 1.70043 1.36691 1.23781 1.25172 0.85087 0.78393 0.78376 0.77243 1.18607 1.19418 1.20150 1.86460 1.76355 1.43717 1.21478 1.24562 0.73940 0.85836 0.86820 1.90587 1.49487 1.18548 1.85148 1.21444 1.02877 0.97624 0.87824 0.86196 1.21806 0.97315 0.96435 1.03762 1.22702 0.92888 0.87982 0.93439 0.92534 1.23082 0.97943 1.01898 0.94979 1.23141 0.97956 0.95227 1.02011 1.23827 0.97479 0.97622 0.85771 1.89042 1.52881 1.58731 1.31679 0.90171 0.93266 0.96048 0.91990 0.91196 0.92367 0.86828 0.88141 0.87837 0.87513 0.90043 0.91796 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.51 9.33 71.98 0.67 -6.84 16 2 C 0.22 12.59 2.56 29.85 0.08 12.66 16 3 H 0.00 -0.06 7.16 -2.39 -0.02 -0.08 16 4 C -0.55 -32.40 8.90 25.60 0.23 -32.18 16 5 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -54.60 11.32 21.45 0.24 -54.36 16 8 Si 0.99 43.99 29.54 68.60 2.03 46.02 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 O -0.36 -18.61 9.77 -51.40 -0.50 -19.12 16 13 C 0.44 20.35 7.10 71.23 0.51 20.85 16 14 O -0.55 -29.23 14.60 27.50 0.40 -28.83 16 15 C -0.08 -2.43 2.49 -11.54 -0.03 -2.46 16 16 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 17 C -0.14 -3.11 8.86 71.98 0.64 -2.47 16 18 C 0.09 2.46 2.49 30.97 0.08 2.53 16 19 H 0.06 1.73 8.08 -2.38 -0.02 1.72 16 20 C -0.14 -2.27 6.03 31.59 0.19 -2.08 16 21 C -0.15 -2.18 7.15 31.89 0.23 -1.95 16 22 C 0.03 0.65 7.72 72.66 0.56 1.21 16 23 O -0.40 -13.83 10.26 -133.20 -1.37 -15.19 16 24 H 0.08 4.62 6.07 -2.39 -0.01 4.61 16 25 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.07 1.73 8.11 -2.39 -0.02 1.72 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.57 6.54 -2.38 -0.02 1.55 16 31 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.10 1.27 6.49 -2.39 -0.02 1.25 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -75.44 296.58 5.45 -69.99 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.05 Total: 10.96 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 3.60 Total: -9.47 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.24 Total: -54.36 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -1.47 Total: -63.14 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -75.44 5.45 -69.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342588305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.676 kcal (2) G-P(sol) polarization free energy of solvation -75.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds