Wall clock time and date at job start Sun Mar 29 2020 22:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86806 * 119.99705 * 2 1 4 4 H 1.48500 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47156 * 299.99656 * 3 2 1 6 6 H 1.48499 * 109.47392 * 60.00058 * 3 2 1 7 7 C 1.40128 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.46124 * 119.99574 * 0.02562 * 7 2 1 10 10 O 1.21750 * 120.00222 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99509 * 180.02562 * 9 7 2 12 12 C 1.39559 * 119.99484 * 184.60333 * 11 9 7 13 13 C 1.39068 * 120.05558 * 324.86024 * 12 11 9 14 14 C 1.38031 * 119.96374 * 180.02562 * 13 12 11 15 15 C 1.38538 * 120.07182 * 0.02562 * 14 13 12 16 16 F 1.35100 * 119.94717 * 180.27832 * 15 14 13 17 17 C 1.38656 * 120.10518 * 359.97438 * 15 14 13 18 18 Cl 1.73601 * 119.98052 * 180.02562 * 17 15 14 19 19 C 1.38154 * 120.03593 * 359.97438 * 17 15 14 20 20 H 0.96995 * 119.99998 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00283 * 4.61111 * 11 9 7 22 22 H 1.08002 * 120.02061 * 0.03076 * 13 12 11 23 23 H 1.07998 * 119.96311 * 180.02562 * 14 13 12 24 24 H 1.08002 * 120.03353 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3966 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2134 0.0010 9 6 1.2764 -2.4790 0.0005 10 8 0.0589 -2.4790 -0.0004 11 7 1.9504 -3.6461 0.0016 12 6 1.2560 -4.8528 -0.0954 13 6 0.0098 -4.9896 0.5064 14 6 -0.6751 -6.1842 0.4097 15 6 -0.1221 -7.2471 -0.2857 16 9 -0.7971 -8.4133 -0.3836 17 6 1.1203 -7.1139 -0.8869 18 17 1.8100 -8.4478 -1.7580 19 6 1.8092 -5.9200 -0.7937 20 1 -0.4850 0.8400 -0.0004 21 1 2.9180 -3.6474 0.0699 22 1 -0.4220 -4.1617 1.0490 23 1 -1.6431 -6.2902 0.8766 24 1 2.7770 -5.8164 -1.2616 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000167773.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:34 Heat of formation + Delta-G solvation = -68.895814 kcal Electronic energy + Delta-G solvation = -14520.469149 eV Core-core repulsion = 11566.979779 eV Total energy + Delta-G solvation = -2953.489369 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 243.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.54932 -39.35664 -37.18789 -36.17791 -33.49253 -32.58513 -30.54377 -28.79096 -26.28424 -22.87258 -22.34677 -20.06856 -17.88726 -17.37234 -16.52971 -16.04917 -15.48938 -15.33243 -14.48958 -14.03938 -13.64299 -13.23596 -13.10442 -12.86662 -12.53417 -12.13904 -11.42617 -11.36913 -11.17564 -11.05739 -10.75921 -10.73064 -10.39168 -9.37625 -9.00973 -8.63900 -7.90465 -7.30909 -6.46934 -4.94781 1.41363 1.48094 2.20194 2.99638 3.08719 3.12936 3.81452 3.90343 4.33243 4.40248 4.49467 5.02780 5.42521 5.54611 5.56187 5.89650 5.97248 6.21144 6.62695 6.75729 6.98335 7.18347 7.54340 7.81502 8.00552 8.73328 9.02935 10.22122 10.43155 Molecular weight = 243.02amu Principal moments of inertia in cm(-1) A = 0.051769 B = 0.005373 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.735014 B = 5210.078731 C = 5643.024637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.541 3.459 10 O -0.559 6.559 11 N -0.695 5.695 12 C 0.197 3.803 13 C -0.098 4.098 14 C -0.121 4.121 15 C 0.056 3.944 16 F -0.140 7.140 17 C -0.047 4.047 18 Cl -0.068 7.068 19 C -0.144 4.144 20 H 0.273 0.727 21 H 0.397 0.603 22 H 0.159 0.841 23 H 0.139 0.861 24 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -9.009 0.011 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.348 3.652 10 O -0.441 6.441 11 N -0.338 5.338 12 C 0.096 3.904 13 C -0.119 4.119 14 C -0.141 4.141 15 C 0.035 3.965 16 F -0.119 7.119 17 C -0.075 4.075 18 Cl -0.040 7.040 19 C -0.167 4.167 20 H 0.084 0.916 21 H 0.231 0.769 22 H 0.177 0.823 23 H 0.157 0.843 24 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.610 -8.919 -0.079 9.293 hybrid contribution 0.881 0.437 -0.197 1.003 sum 3.491 -8.481 -0.275 9.176 Atomic orbital electron populations 1.69975 1.07209 1.27959 1.33283 1.25764 0.94747 1.00661 0.92443 0.86190 0.80448 0.81024 0.78468 1.18566 1.19928 1.19913 1.20869 0.93949 0.88757 1.53466 0.90737 1.18447 0.87523 0.81974 0.77217 1.90625 1.13658 1.85758 1.54096 1.44207 1.09959 1.03792 1.75881 1.17870 0.93194 0.86550 0.92771 1.21560 0.94666 0.96953 0.98755 1.21013 1.01046 0.91789 1.00203 1.17278 0.91180 0.83447 1.04599 1.91460 1.79478 1.45953 1.94976 1.20549 0.94386 0.90862 1.01745 1.98343 1.84367 1.46069 1.75194 1.20669 1.02217 0.91612 1.02167 0.91601 0.76895 0.82330 0.84307 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.00 11.82 55.55 0.66 -20.35 14 2 C 0.09 2.20 5.50 -17.35 -0.10 2.11 14 3 Si 0.91 18.64 29.56 -169.99 -5.02 13.61 14 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 5 H -0.27 -5.53 7.11 56.52 0.40 -5.12 14 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 7 C -0.53 -13.78 9.53 -35.71 -0.34 -14.12 14 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 14 9 C 0.54 14.01 7.58 -13.10 -0.10 13.91 14 10 O -0.56 -16.32 12.44 5.14 0.06 -16.26 14 11 N -0.70 -14.33 5.32 -11.20 -0.06 -14.39 14 12 C 0.20 3.78 6.30 -83.75 -0.53 3.25 14 13 C -0.10 -1.91 8.69 -39.35 -0.34 -2.25 14 14 C -0.12 -2.03 10.02 -39.55 -0.40 -2.42 14 15 C 0.06 0.94 7.28 -39.32 -0.29 0.65 14 16 F -0.14 -2.28 16.83 2.25 0.04 -2.25 14 17 C -0.05 -0.77 6.32 -39.46 -0.25 -1.02 14 18 Cl -0.07 -0.98 28.61 -51.86 -1.48 -2.47 14 19 C -0.14 -2.38 9.75 -39.33 -0.38 -2.76 14 20 H 0.27 6.85 8.29 -40.82 -0.34 6.51 14 21 H 0.40 6.87 8.80 -40.82 -0.36 6.51 14 22 H 0.16 3.47 6.22 -52.49 -0.33 3.15 14 23 H 0.14 1.99 8.06 -52.49 -0.42 1.56 14 24 H 0.14 1.97 8.06 -52.49 -0.42 1.54 14 LS Contribution 244.14 15.07 3.68 3.68 Total: -1.00 -29.50 244.14 -5.93 -35.43 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -1.08 Total: 5.65 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.72 Total: -2.66 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.60 Total: -34.74 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.06 Total: -16.26 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.48 Total: -2.47 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.50 -5.93 -35.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000167773.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.465 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds