Wall clock time and date at job start Sun Mar 29 2020 22:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29381 * 1 3 3 Si 1.86807 * 119.99817 * 2 1 4 4 H 1.48505 * 109.46723 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47124 * 119.99463 * 3 2 1 7 7 C 1.46585 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00016 * 180.02562 * 7 2 1 9 9 O 1.22494 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.35178 * 116.99848 * 179.97438 * 9 7 2 11 11 O 1.21612 * 119.99559 * 0.02562 * 10 9 7 12 12 C 1.46234 * 119.99846 * 180.02562 * 10 9 7 13 13 C 1.36909 * 125.46598 * 180.02562 * 12 10 9 14 14 C 1.37327 * 113.27451 * 180.02562 * 13 12 10 15 15 C 1.33938 * 115.12123 * 359.97438 * 14 13 12 16 16 N 1.48020 * 124.51368 * 179.97438 * 15 14 13 17 17 O 1.31704 * 120.00150 * 0.02562 * 16 15 14 18 18 O 1.31700 * 120.00243 * 179.72541 * 16 15 14 19 19 S 1.70616 * 110.97214 * 0.26994 * 15 14 13 20 20 H 0.96997 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.08001 * 123.36513 * 0.03731 * 13 12 10 22 22 H 1.08008 * 122.43912 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2278 1.6178 0.0000 4 1 3.0816 1.6964 -1.2125 5 1 1.2627 2.7465 -0.0006 6 1 3.0814 1.6966 1.2125 7 6 2.0268 -1.2694 0.0006 8 1 3.1067 -1.2694 0.0010 9 8 1.4143 -2.3303 0.0006 10 6 2.1506 -3.4639 0.0006 11 8 3.3650 -3.4002 0.0010 12 6 1.4867 -4.7669 0.0000 13 6 2.1196 -5.9809 0.0004 14 6 1.2518 -7.0453 -0.0008 15 6 -0.0474 -6.7196 -0.0017 16 7 -1.1574 -7.6988 -0.0037 17 8 -0.8968 -8.9898 -0.0042 18 8 -2.4058 -7.2792 0.0010 19 16 -0.2524 -5.0259 -0.0085 20 1 -0.4850 0.8400 -0.0004 21 1 3.1940 -6.0906 0.0019 22 1 1.5922 -8.0703 -0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003496407.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:34 Heat of formation + Delta-G solvation = 5.373764 kcal Electronic energy + Delta-G solvation = -14328.750185 eV Core-core repulsion = 11368.152303 eV Total energy + Delta-G solvation = -2960.597882 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 243.008 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.04628 -38.56986 -37.25704 -35.74087 -33.82918 -33.64980 -30.29130 -27.52698 -25.76886 -23.45982 -22.00056 -19.34744 -19.22551 -19.05368 -17.36426 -16.61436 -15.75694 -15.66832 -15.38219 -15.35555 -15.08361 -13.75604 -13.06272 -12.83044 -12.71491 -12.16137 -11.93238 -11.28720 -11.14963 -10.92503 -10.72116 -10.62652 -10.44504 -10.14446 -9.86018 -9.41046 -8.77725 -8.40484 -7.96019 -4.38238 -0.56731 1.05593 1.22200 2.04575 2.26485 2.40643 2.46093 2.57919 2.67837 3.11168 3.36137 3.80434 4.13487 5.27234 5.48744 5.59819 5.93856 6.02520 6.33211 6.48362 6.56378 6.67991 7.35982 7.42290 8.14816 8.96807 9.36229 Molecular weight = 243.01amu Principal moments of inertia in cm(-1) A = 0.047532 B = 0.005848 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.939236 B = 4786.466288 C = 5365.557588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.022 3.978 3 Si 0.968 3.032 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.250 1.250 7 C -0.217 4.217 8 H 0.125 0.875 9 O -0.122 6.122 10 C 0.337 3.663 11 O -0.570 6.570 12 C -0.128 4.128 13 C -0.153 4.153 14 C -0.039 4.039 15 C -0.223 4.223 16 N 0.048 4.952 17 O -0.236 6.236 18 O -0.240 6.240 19 S 0.286 5.714 20 H 0.312 0.688 21 H 0.159 0.841 22 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 3.485 -0.015 4.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.203 4.203 3 Si 0.787 3.213 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.174 1.174 7 C -0.306 4.306 8 H 0.142 0.858 9 O -0.021 6.021 10 C 0.198 3.802 11 O -0.478 6.478 12 C -0.251 4.251 13 C -0.181 4.181 14 C -0.072 4.072 15 C -0.434 4.434 16 N 0.497 4.503 17 O -0.410 6.410 18 O -0.412 6.412 19 S 0.553 5.447 20 H 0.125 0.875 21 H 0.177 0.823 22 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.011 4.544 -0.029 4.656 hybrid contribution 1.149 -0.777 0.008 1.387 sum 2.160 3.767 -0.020 4.342 Atomic orbital electron populations 1.68891 1.08650 1.33363 1.23846 1.27884 0.95929 1.00759 0.95749 0.85279 0.79398 0.75093 0.81552 1.17412 1.18656 1.17408 1.22242 0.95965 0.82214 1.30172 0.85819 1.80693 1.44047 1.14972 1.62379 1.18738 0.85713 0.82027 0.93769 1.90695 1.12640 1.84104 1.60312 1.23923 0.96488 0.95652 1.09063 1.20121 1.01246 0.88198 1.08489 1.19833 0.89505 1.01977 0.95931 1.24205 0.89785 0.95510 1.33905 1.49193 1.02327 1.02219 0.96564 1.96192 1.91850 0.93113 1.59856 1.96231 0.99726 1.84938 1.60350 1.83634 1.01795 0.90472 1.68782 0.87464 0.82309 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 62. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -14.31 13.66 55.99 0.76 -13.55 14 2 C 0.02 0.42 5.69 -15.22 -0.09 0.34 14 3 Si 0.97 13.77 29.64 -169.99 -5.04 8.73 14 4 H -0.25 -3.55 7.11 56.52 0.40 -3.15 14 5 H -0.26 -3.50 7.11 56.52 0.40 -3.10 14 6 H -0.25 -3.55 7.11 56.52 0.40 -3.14 14 7 C -0.22 -4.70 9.62 34.10 0.33 -4.38 14 8 H 0.12 2.67 6.70 -52.49 -0.35 2.32 14 9 O -0.12 -2.82 9.14 -2.14 -0.02 -2.84 14 10 C 0.34 7.73 7.79 33.94 0.26 8.00 14 11 O -0.57 -14.20 15.96 -19.33 -0.31 -14.51 14 12 C -0.13 -2.62 6.45 -36.85 -0.24 -2.86 14 13 C -0.15 -2.82 10.01 -40.39 -0.40 -3.23 14 14 C -0.04 -0.69 9.77 -41.42 -0.40 -1.10 14 15 C -0.22 -4.46 7.34 -11.14 -0.08 -4.54 14 16 N 0.05 1.06 4.98 32.58 0.16 1.22 14 17 O -0.24 -5.18 19.61 -31.57 -0.62 -5.80 14 18 O -0.24 -5.45 19.73 -31.57 -0.62 -6.07 14 19 S 0.29 5.57 22.64 -107.50 -2.43 3.13 14 20 H 0.31 5.27 8.26 -40.82 -0.34 4.93 14 21 H 0.16 2.69 8.06 -52.49 -0.42 2.27 14 22 H 0.15 2.40 7.97 -52.48 -0.42 1.98 14 LS Contribution 244.35 15.07 3.68 3.68 Total: -1.00 -26.27 244.35 -5.38 -31.65 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -0.33 Total: 2.12 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.62 Total: -7.77 kcal Atomic # 7 Polarization: -13.26 SS G_CDS: 0.93 Total: -12.33 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.57 Total: -29.22 kcal Atomic # 14 Polarization: 13.77 SS G_CDS: -5.04 Total: 8.73 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -2.43 Total: 3.13 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.27 -5.38 -31.65 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003496407.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.026 kcal (2) G-P(sol) polarization free energy of solvation -26.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds