Wall clock time and date at job start Sun Mar 29 2020 22:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29381 * 1 3 3 Si 1.86807 * 119.99817 * 2 1 4 4 H 1.48505 * 109.46723 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47124 * 119.99463 * 3 2 1 7 7 C 1.46585 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00016 * 180.02562 * 7 2 1 9 9 O 1.22494 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.35178 * 116.99848 * 179.97438 * 9 7 2 11 11 O 1.21612 * 119.99559 * 0.02562 * 10 9 7 12 12 C 1.46234 * 119.99846 * 180.02562 * 10 9 7 13 13 C 1.36909 * 125.46598 * 180.02562 * 12 10 9 14 14 C 1.37327 * 113.27451 * 180.02562 * 13 12 10 15 15 C 1.33938 * 115.12123 * 359.97438 * 14 13 12 16 16 N 1.48020 * 124.51368 * 179.97438 * 15 14 13 17 17 O 1.31704 * 120.00150 * 0.02562 * 16 15 14 18 18 O 1.31700 * 120.00243 * 179.72541 * 16 15 14 19 19 S 1.70616 * 110.97214 * 0.26994 * 15 14 13 20 20 H 0.96997 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.08001 * 123.36513 * 0.03731 * 13 12 10 22 22 H 1.08008 * 122.43912 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2278 1.6178 0.0000 4 1 3.0816 1.6964 -1.2125 5 1 1.2627 2.7465 -0.0006 6 1 3.0814 1.6966 1.2125 7 6 2.0268 -1.2694 0.0006 8 1 3.1067 -1.2694 0.0010 9 8 1.4143 -2.3303 0.0006 10 6 2.1506 -3.4639 0.0006 11 8 3.3650 -3.4002 0.0010 12 6 1.4867 -4.7669 0.0000 13 6 2.1196 -5.9809 0.0004 14 6 1.2518 -7.0453 -0.0008 15 6 -0.0474 -6.7196 -0.0017 16 7 -1.1574 -7.6988 -0.0037 17 8 -0.8968 -8.9898 -0.0042 18 8 -2.4058 -7.2792 0.0010 19 16 -0.2524 -5.0259 -0.0085 20 1 -0.4850 0.8400 -0.0004 21 1 3.1940 -6.0906 0.0019 22 1 1.5922 -8.0703 -0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003496407.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:33 Heat of formation + Delta-G solvation = -12.454260 kcal Electronic energy + Delta-G solvation = -14329.523266 eV Core-core repulsion = 11368.152303 eV Total energy + Delta-G solvation = -2961.370963 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 243.008 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.80655 -39.27476 -38.40576 -37.08302 -36.86887 -33.67564 -31.39454 -29.74913 -27.32933 -24.87584 -23.59533 -22.41039 -20.71290 -19.83691 -18.85932 -18.81069 -17.84478 -17.57465 -17.07027 -16.15907 -15.68272 -15.49051 -14.68292 -14.48814 -14.07744 -13.94116 -13.52534 -13.05405 -12.97673 -12.29434 -12.00990 -11.68489 -11.38188 -10.93489 -10.89020 -10.79952 -10.67615 -9.71907 -9.28756 -6.37108 -2.07189 -0.18343 0.37446 0.68578 0.84327 1.06197 1.40067 1.51179 1.65729 1.91289 2.02523 2.07149 2.27052 2.43662 3.25542 3.91930 4.36906 4.56590 4.70219 4.74925 5.24845 5.54585 5.71774 6.19251 6.46549 6.62041 7.42916 Molecular weight = 243.01amu Principal moments of inertia in cm(-1) A = 0.047532 B = 0.005848 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.939236 B = 4786.466288 C = 5365.557588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.073 4.073 3 Si 1.058 2.942 4 H -0.219 1.219 5 H -0.235 1.235 6 H -0.219 1.219 7 C 0.328 3.672 8 H 0.236 0.764 9 O -0.140 6.140 10 C 0.422 3.578 11 O -0.539 6.539 12 C -0.351 4.351 13 C -0.033 4.033 14 C -0.218 4.218 15 C -0.134 4.134 16 N 0.024 4.976 17 O -0.561 6.561 18 O -0.550 6.550 19 S 0.106 5.894 20 H 0.385 0.615 21 H 0.159 0.841 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.071 36.372 0.001 39.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.308 4.308 3 Si 0.863 3.137 4 H -0.141 1.141 5 H -0.157 1.157 6 H -0.141 1.141 7 C 0.216 3.784 8 H 0.252 0.748 9 O -0.019 6.019 10 C 0.288 3.712 11 O -0.440 6.440 12 C -0.468 4.468 13 C -0.060 4.060 14 C -0.241 4.241 15 C -0.377 4.377 16 N 0.347 4.653 17 O -0.650 6.650 18 O -0.640 6.640 19 S 0.347 5.653 20 H 0.207 0.793 21 H 0.176 0.824 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.456 36.383 -0.011 38.791 hybrid contribution 0.145 -2.049 0.008 2.054 sum 13.601 34.334 -0.003 36.929 Atomic orbital electron populations 1.68796 1.10924 1.41968 0.96328 1.31173 0.98376 1.02103 0.99103 0.84180 0.78896 0.66234 0.84423 1.14144 1.15734 1.14136 1.28588 1.04209 0.83891 0.61711 0.74812 1.81938 1.49492 1.17940 1.52486 1.19560 0.84929 0.80245 0.86445 1.90841 1.11464 1.81755 1.59955 1.21572 0.94838 0.92165 1.38257 1.19816 0.99343 0.88240 0.98625 1.19136 0.90266 1.00135 1.14568 1.23793 0.89735 0.94521 1.29661 1.47925 1.00553 1.00308 1.16522 1.95779 1.91943 0.96689 1.80617 1.95779 1.03369 1.84943 1.79940 1.81834 1.04198 0.93538 1.85708 0.79253 0.82351 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -4.00 13.66 23.21 0.32 -3.69 14 2 C -0.07 -0.12 5.69 87.23 0.50 0.38 14 3 Si 1.06 -6.09 29.64 68.60 2.03 -4.06 14 4 H -0.22 1.23 7.11 99.48 0.71 1.94 14 5 H -0.24 1.15 7.11 99.48 0.71 1.86 14 6 H -0.22 1.23 7.11 99.48 0.71 1.94 14 7 C 0.33 2.20 9.62 70.00 0.67 2.87 14 8 H 0.24 -0.28 6.70 -2.91 -0.02 -0.30 14 9 O -0.14 -2.85 9.14 80.98 0.74 -2.11 14 10 C 0.42 13.02 7.79 69.90 0.54 13.57 14 11 O -0.54 -16.09 15.96 19.46 0.31 -15.78 14 12 C -0.35 -15.39 6.45 24.04 0.16 -15.24 14 13 C -0.03 -1.59 10.01 21.74 0.22 -1.37 14 14 C -0.22 -12.86 9.77 21.08 0.21 -12.65 14 15 C -0.13 -8.91 7.34 80.95 0.59 -8.31 14 16 N 0.02 1.93 4.98 -50.84 -0.25 1.68 14 17 O -0.56 -47.34 19.61 3.51 0.07 -47.27 14 18 O -0.55 -45.43 19.73 3.51 0.07 -45.36 14 19 S 0.11 5.60 22.64 -56.49 -1.28 4.32 14 20 H 0.38 0.37 8.26 -92.71 -0.77 -0.39 14 21 H 0.16 6.37 8.06 -2.91 -0.02 6.35 14 22 H 0.11 6.59 7.97 -2.91 -0.02 6.56 14 Total: -1.00 -121.25 244.35 6.18 -115.07 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.29 Total: 17.96 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 2.89 Total: -20.76 kcal Atomic # 7 Polarization: -2.07 SS G_CDS: 0.06 Total: -2.01 kcal Atomic # 8 Polarization: -111.72 SS G_CDS: 1.19 Total: -110.53 kcal Atomic # 14 Polarization: -6.09 SS G_CDS: 2.03 Total: -4.06 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.28 Total: 4.32 kcal Total: -121.25 6.18 -115.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003496407.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.617 kcal (2) G-P(sol) polarization free energy of solvation -121.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds