Wall clock time and date at job start Sun Mar 29 2020 22:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.47014 * 110.99498 * 2 1 4 4 C 1.53098 * 109.25384 * 177.60554 * 3 2 1 5 5 O 1.43021 * 109.25737 * 56.84919 * 4 3 2 6 6 C 1.43013 * 113.73613 * 301.32882 * 5 4 3 7 7 H 1.09002 * 109.50421 * 298.68696 * 6 5 4 8 8 C 1.53006 * 109.50291 * 178.60676 * 6 5 4 9 9 N 1.46897 * 109.47346 * 65.00064 * 8 6 5 10 10 C 1.46892 * 111.00300 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47393 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47214 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46964 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00031 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99627 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00167 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99735 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47249 * 89.99770 * 17 15 13 19 19 H 1.48506 * 109.46826 * 209.99945 * 17 15 13 20 20 H 1.48498 * 109.46922 * 329.99532 * 17 15 13 21 21 C 1.47009 * 110.99846 * 236.36369 * 2 1 3 22 22 H 1.08996 * 109.47370 * 63.95765 * 1 2 3 23 23 H 1.09008 * 109.46792 * 183.95547 * 1 2 3 24 24 H 1.08995 * 109.47001 * 303.95410 * 1 2 3 25 25 H 1.09000 * 109.50922 * 57.67018 * 3 2 1 26 26 H 1.08998 * 109.50673 * 297.54175 * 3 2 1 27 27 H 1.08994 * 109.51024 * 296.90964 * 4 3 2 28 28 H 1.09003 * 109.54006 * 176.79935 * 4 3 2 29 29 H 1.09004 * 109.46579 * 184.99440 * 8 6 5 30 30 H 1.08992 * 109.47046 * 304.99624 * 8 6 5 31 31 H 1.00901 * 111.00121 * 56.03596 * 9 8 6 32 32 H 1.09003 * 109.47171 * 299.99549 * 10 9 8 33 33 H 1.08997 * 109.47757 * 59.99127 * 10 9 8 34 34 H 1.09000 * 109.47327 * 299.99723 * 11 10 9 35 35 H 1.08999 * 109.47253 * 59.99688 * 11 10 9 36 36 H 1.09000 * 109.46824 * 299.99555 * 12 11 10 37 37 H 1.08999 * 109.47211 * 59.99729 * 12 11 10 38 38 H 0.96998 * 120.00075 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.50912 * 62.45948 * 21 2 1 40 40 H 1.08999 * 109.50922 * 302.32299 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 0.0604 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7849 -1.0708 7 1 3.8393 -1.3085 -0.1680 8 6 4.0826 -1.5057 -2.2998 9 7 5.5410 -1.6301 -2.1748 10 6 6.1125 -2.3184 -3.3399 11 6 7.6295 -2.4281 -3.1740 12 6 8.2246 -3.1456 -4.3873 13 6 9.7188 -3.2542 -4.2236 14 1 10.1962 -2.8514 -3.3425 15 6 10.4763 -3.8678 -5.1986 16 7 9.8950 -4.3588 -6.2712 17 14 12.3285 -4.0019 -4.9960 18 1 12.6592 -5.2671 -4.2926 19 1 12.9744 -3.9953 -6.3332 20 1 12.8241 -2.8495 -4.2013 21 6 1.9959 -0.7602 -1.1427 22 1 -0.3634 0.4512 -0.9233 23 1 -0.3633 -1.0253 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 1.6133 1.9093 0.8682 26 1 1.6827 1.8826 -0.9110 27 1 3.8385 0.8645 0.9965 28 1 3.9227 2.3397 0.0033 29 1 3.6382 -2.4985 -2.3714 30 1 3.8422 -0.9344 -3.1963 31 1 5.7917 -2.1000 -1.3178 32 1 5.6822 -3.3167 -3.4193 33 1 5.8861 -1.7524 -4.2435 34 1 8.0595 -1.4296 -3.0949 35 1 7.8562 -2.9939 -2.2704 36 1 7.7946 -4.1441 -4.4659 37 1 7.9979 -2.5801 -5.2911 38 1 10.4278 -4.7908 -6.9569 39 1 1.6828 -0.2843 -2.0720 40 1 1.6135 -1.7804 -1.1086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069584932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:41 Heat of formation + Delta-G solvation = -77.025872 kcal Electronic energy + Delta-G solvation = -17282.561406 eV Core-core repulsion = 14516.688576 eV Total energy + Delta-G solvation = -2765.872829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65719 -37.81650 -36.58727 -35.52760 -33.71043 -31.93154 -29.86289 -28.43041 -26.34540 -25.05015 -24.06888 -22.87042 -21.90043 -21.29814 -18.48818 -17.74375 -17.21991 -16.61177 -16.45829 -16.33300 -15.98391 -15.87908 -15.24541 -14.93984 -14.63503 -14.38160 -14.05238 -13.44561 -13.37266 -13.18513 -13.10525 -12.86321 -12.65262 -12.47697 -12.34411 -12.21669 -12.04658 -11.54516 -11.49614 -11.33982 -11.05921 -10.55970 -10.54858 -9.45166 -9.31900 -8.19780 -6.30810 1.40327 1.42162 1.53603 2.41647 2.71897 2.84390 3.13212 3.24058 3.92387 3.96007 4.00037 4.06643 4.22235 4.25628 4.31764 4.42093 4.50539 4.59017 4.61188 4.64687 4.65607 4.73228 4.81937 4.93445 4.97020 4.98443 5.04077 5.12199 5.25181 5.52587 5.75886 5.86279 5.87087 5.94012 6.04376 6.26984 6.31440 6.51559 6.86060 7.38344 8.92317 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.065006 B = 0.003159 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.626011 B = 8860.265134 C = 9146.480429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.019 3.981 4 C 0.056 3.944 5 O -0.390 6.390 6 C 0.102 3.898 7 H 0.065 0.935 8 C 0.068 3.932 9 N -0.689 5.689 10 C 0.074 3.926 11 C -0.092 4.092 12 C 0.025 3.975 13 C -0.544 4.544 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.264 1.264 21 C 0.028 3.972 22 H 0.027 0.973 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.036 0.964 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.344 0.656 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.052 0.948 36 H -0.007 1.007 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.039 0.961 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.583 9.213 14.052 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.109 4.109 4 C -0.021 4.021 5 O -0.309 6.309 6 C 0.043 3.957 7 H 0.083 0.917 8 C -0.062 4.062 9 N -0.320 5.320 10 C -0.055 4.055 11 C -0.130 4.130 12 C -0.012 4.012 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.101 4.101 22 H 0.045 0.955 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.162 0.838 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.011 0.989 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.161 9.609 13.939 25.568 hybrid contribution 0.171 -0.810 -0.772 1.132 sum -18.989 8.799 13.166 24.726 Atomic orbital electron populations 1.22444 0.85502 1.03215 1.01176 1.62229 1.09491 1.13981 1.42151 1.22841 0.96264 0.89623 1.02171 1.22816 0.92535 0.96983 0.89748 1.88120 1.70351 1.23687 1.48783 1.22109 0.91903 0.83744 0.97916 0.91740 1.21949 0.87748 0.98763 0.97737 1.60326 1.10267 1.56556 1.04892 1.21823 0.94690 0.95648 0.93384 1.21370 0.93681 0.99665 0.98310 1.18972 0.94746 0.94147 0.93363 1.21714 0.93978 1.37190 1.05317 0.92287 1.26008 1.04155 0.95001 0.94803 1.70094 1.37707 1.39670 1.10009 0.85423 0.78920 0.78954 0.77610 1.19587 1.20638 1.18832 1.22719 0.94926 1.00245 0.92186 0.95472 0.90438 0.89971 0.87799 0.94524 0.92385 0.87272 0.92207 0.91272 0.83806 0.95403 0.92305 0.93244 0.92965 0.98878 0.99122 0.92735 0.94308 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.61 127.69 1.23 1.52 16 2 N -0.55 -9.36 4.99 -921.43 -4.59 -13.95 16 3 C 0.02 0.30 5.66 86.31 0.49 0.79 16 4 C 0.06 1.05 7.01 72.01 0.50 1.56 16 5 O -0.39 -10.19 10.42 -148.98 -1.55 -11.74 16 6 C 0.10 2.28 2.98 30.63 0.09 2.37 16 7 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 8 C 0.07 1.68 5.36 86.31 0.46 2.14 16 9 N -0.69 -21.02 6.45 -513.91 -3.31 -24.34 16 10 C 0.07 2.65 5.69 86.30 0.49 3.14 16 11 C -0.09 -4.00 5.41 30.59 0.17 -3.84 16 12 C 0.03 1.39 4.97 29.85 0.15 1.54 16 13 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 16 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 17 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 21 C 0.03 0.51 4.95 86.31 0.43 0.94 16 22 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.08 0.80 8.13 -2.39 -0.02 0.78 16 25 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.34 9.64 8.73 -89.69 -0.78 8.85 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.98 323.53 -2.25 -70.23 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.19 Total: 11.69 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.70 Total: -21.34 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -7.62 Total: -96.11 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.55 Total: -11.74 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.98 -2.25 -70.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069584932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.795 kcal (2) G-P(sol) polarization free energy of solvation -67.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds