Wall clock time and date at job start Sun Mar 29 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 O 1.42902 * 109.46973 * 119.99823 * 2 1 3 5 5 C 1.42905 * 113.99771 * 90.00291 * 4 2 1 6 6 C 1.53004 * 109.47227 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.47084 * 66.17770 * 6 5 4 8 8 C 1.46903 * 110.99399 * 75.87946 * 7 6 5 9 9 C 1.53244 * 109.33620 * 187.25312 * 8 7 6 10 10 N 1.47086 * 108.52081 * 306.17161 * 9 8 7 11 11 C 1.36936 * 120.88086 * 231.18712 * 10 9 8 12 12 H 1.08003 * 119.99846 * 27.83921 * 11 10 9 13 13 C 1.38805 * 119.99852 * 207.56158 * 11 10 9 14 14 N 1.31622 * 120.00357 * 15.14676 * 13 11 10 15 15 Si 1.86804 * 119.99730 * 195.14428 * 13 11 10 16 16 H 1.48503 * 109.47086 * 90.00780 * 15 13 11 17 17 H 1.48507 * 109.47089 * 210.00050 * 15 13 11 18 18 H 1.48493 * 109.47246 * 330.00109 * 15 13 11 19 19 C 1.47076 * 118.23684 * 51.45820 * 10 9 8 20 20 C 1.46891 * 111.00036 * 200.18043 * 7 6 5 21 21 H 1.09001 * 109.46777 * 59.99781 * 1 2 3 22 22 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47095 * 299.99773 * 1 2 3 24 24 H 1.09003 * 109.47095 * 240.00227 * 2 1 3 25 25 H 1.09002 * 109.46651 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46999 * 299.99965 * 3 2 1 27 27 H 1.09003 * 109.46961 * 60.00145 * 3 2 1 28 28 H 1.09005 * 109.47132 * 59.99772 * 5 4 2 29 29 H 1.08998 * 109.46936 * 299.99855 * 5 4 2 30 30 H 1.09002 * 109.46508 * 306.17962 * 6 5 4 31 31 H 1.08989 * 109.47174 * 186.18348 * 6 5 4 32 32 H 1.08999 * 109.49467 * 67.29523 * 8 7 6 33 33 H 1.08997 * 109.51680 * 307.22265 * 8 7 6 34 34 H 1.08998 * 109.62636 * 186.46637 * 9 8 7 35 35 H 1.08992 * 109.63232 * 65.87861 * 9 8 7 36 36 H 0.96995 * 120.00049 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.63101 * 68.25131 * 19 10 9 38 38 H 1.09002 * 109.62659 * 188.83477 * 19 10 9 39 39 H 1.08998 * 109.49375 * 292.70805 * 20 7 6 40 40 H 1.08998 * 109.49487 * 52.79154 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7091 -2.6925 2.2942 7 7 1.6630 -2.5966 3.3210 8 6 0.6113 -3.5973 3.0960 9 6 -0.5432 -3.3485 4.0726 10 7 0.0000 -3.3135 5.4390 11 6 -0.5478 -4.0796 6.4330 12 1 -1.0443 -5.0071 6.1884 13 6 -0.4600 -3.6672 7.7554 14 7 -0.1274 -2.4251 8.0368 15 14 -0.8139 -4.8749 9.1359 16 1 0.4431 -5.5622 9.5267 17 1 -1.3620 -4.1426 10.3059 18 1 -1.8042 -5.8798 8.6727 19 6 1.1433 -2.4291 5.7108 20 6 2.2351 -2.7185 4.6684 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 2.9320 -2.2467 0.1986 29 1 1.2538 -2.5433 0.7125 30 1 3.5960 -2.1537 2.6276 31 1 2.9611 -3.7399 2.1289 32 1 1.0178 -4.5953 3.2601 33 1 0.2455 -3.5173 2.0724 34 1 -1.2731 -4.1537 3.9893 35 1 -1.0180 -2.3947 3.8428 36 1 -0.0664 -2.1368 8.9609 37 1 0.8275 -1.3886 5.6354 38 1 1.5289 -2.6262 6.7112 39 1 2.6190 -3.7287 4.8106 40 1 3.0470 -2.0007 4.7852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070994867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:22 Heat of formation + Delta-G solvation = -21.359103 kcal Electronic energy + Delta-G solvation = -18375.970512 eV Core-core repulsion = 15612.511575 eV Total energy + Delta-G solvation = -2763.458937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.60109 -37.54716 -34.51813 -32.65584 -31.23580 -29.91974 -28.68109 -27.20507 -25.74803 -23.16103 -22.40957 -21.25362 -21.09167 -19.01158 -16.80434 -16.69567 -15.58592 -15.05943 -14.68697 -14.32928 -14.16662 -13.70512 -13.40728 -13.14818 -13.06789 -12.94394 -12.40189 -12.22929 -12.06843 -11.58924 -11.35241 -11.24232 -11.20887 -10.91598 -10.71665 -10.57542 -10.39834 -10.17898 -9.96058 -9.68737 -9.50274 -9.33916 -8.44607 -7.65608 -6.58079 -5.71629 -3.14603 3.40977 3.47349 3.48904 3.82925 4.45555 4.55256 4.88641 5.06572 5.18132 5.31221 5.37328 5.44251 5.49085 5.57873 5.58526 5.62944 5.82543 5.83089 5.88471 5.97264 6.01863 6.10080 6.19609 6.23468 6.29997 6.33744 6.43822 6.61592 6.78975 7.02257 7.35329 7.46098 7.74027 7.77241 7.81521 7.90970 8.50724 9.27945 9.91034 10.50626 11.36783 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041349 B = 0.005059 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.005414 B = 5533.760166 C = 5599.679507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 C -0.148 4.148 4 O -0.362 6.362 5 C 0.072 3.928 6 C 0.054 3.946 7 N -0.523 5.523 8 C 0.044 3.956 9 C 0.150 3.850 10 N -0.596 5.596 11 C -0.251 4.251 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.904 5.904 15 Si 0.903 3.097 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.280 1.280 19 C 0.179 3.821 20 C 0.037 3.963 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.253 0.747 37 H 0.027 0.973 38 H 0.088 0.912 39 H 0.022 0.978 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 2.557 -15.675 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.021 3.979 3 C -0.205 4.205 4 O -0.281 6.281 5 C -0.005 4.005 6 C -0.075 4.075 7 N -0.248 5.248 8 C -0.086 4.086 9 C 0.023 3.977 10 N -0.319 5.319 11 C -0.380 4.380 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.549 5.549 15 Si 0.733 3.267 16 H -0.215 1.215 17 H -0.217 1.217 18 H -0.205 1.205 19 C 0.053 3.947 20 C -0.092 4.092 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.106 0.894 39 H 0.040 0.960 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.926 3.181 -15.349 16.431 hybrid contribution 0.140 -1.536 0.505 1.623 sum 5.066 1.645 -14.844 15.771 Atomic orbital electron populations 1.22269 0.96138 1.02354 1.02266 1.22017 0.93754 0.93681 0.88399 1.21841 1.01434 0.94933 1.02333 1.88083 1.86189 1.19497 1.34308 1.22533 0.98852 0.82387 0.96739 1.22114 0.95406 0.97798 0.92192 1.61881 1.11033 1.49666 1.02176 1.22655 0.94564 0.92297 0.99064 1.20953 0.92640 0.98491 0.85599 1.44132 1.33204 1.49930 1.04653 1.19210 1.32741 0.99817 0.86268 0.91747 1.25050 1.01123 0.95584 0.97971 1.70016 1.52627 1.14375 1.17900 0.86276 0.77924 0.80460 0.82015 1.21543 1.21734 1.20512 1.20964 0.85121 0.92955 0.95645 1.22980 0.98769 0.98252 0.89241 0.92361 0.92569 0.91438 0.93113 0.92320 0.91755 0.91597 0.94037 0.93526 0.90646 0.94065 0.95717 0.92380 0.92861 0.95691 0.93645 0.95477 0.89364 0.95986 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.53 37.16 0.35 -1.64 16 2 C 0.08 0.94 3.34 -26.73 -0.09 0.85 16 3 C -0.15 -1.52 9.56 37.16 0.36 -1.17 16 4 O -0.36 -5.50 9.95 -35.23 -0.35 -5.85 16 5 C 0.07 0.98 5.95 37.16 0.22 1.20 16 6 C 0.05 0.81 5.39 -3.82 -0.02 0.79 16 7 N -0.52 -9.95 4.52 -234.03 -1.06 -11.01 16 8 C 0.04 0.83 5.45 -3.70 -0.02 0.81 16 9 C 0.15 3.35 6.69 -3.60 -0.02 3.33 16 10 N -0.60 -15.71 3.03 -171.73 -0.52 -16.23 16 11 C -0.25 -7.10 9.64 -15.06 -0.15 -7.24 16 12 H 0.06 1.78 7.87 -52.48 -0.41 1.37 16 13 C 0.00 0.03 4.98 -17.43 -0.09 -0.06 16 14 N -0.90 -26.91 11.08 55.49 0.62 -26.29 16 15 Si 0.90 22.09 29.58 -169.99 -5.03 17.06 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.18 4.54 5.43 -3.36 -0.02 4.52 16 20 C 0.04 0.76 5.60 -3.47 -0.02 0.74 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.52 7.79 -51.93 -0.40 0.12 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.05 0.63 6.40 -51.93 -0.33 0.30 16 30 H 0.08 1.13 7.77 -51.93 -0.40 0.72 16 31 H 0.04 0.58 8.00 -51.94 -0.42 0.17 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.96 6.62 -51.93 -0.34 0.61 16 34 H 0.05 1.14 7.95 -51.93 -0.41 0.72 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 2.44 6.11 -51.93 -0.32 2.13 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -30.95 314.97 -8.31 -39.26 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -7.22 Total: -3.82 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 0.51 Total: 2.13 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.96 Total: -53.53 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.35 Total: -5.85 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.95 -8.31 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.900 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds