Wall clock time and date at job start Sun Mar 29 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 O 1.42902 * 109.46973 * 119.99823 * 2 1 3 5 5 C 1.42905 * 113.99771 * 90.00291 * 4 2 1 6 6 C 1.53004 * 109.47227 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.47084 * 66.17770 * 6 5 4 8 8 C 1.46903 * 110.99399 * 75.87946 * 7 6 5 9 9 C 1.53244 * 109.33620 * 187.25312 * 8 7 6 10 10 N 1.47086 * 108.52081 * 306.17161 * 9 8 7 11 11 C 1.36936 * 120.88086 * 231.18712 * 10 9 8 12 12 H 1.08003 * 119.99846 * 27.83921 * 11 10 9 13 13 C 1.38805 * 119.99852 * 207.56158 * 11 10 9 14 14 N 1.31622 * 120.00357 * 15.14676 * 13 11 10 15 15 Si 1.86804 * 119.99730 * 195.14428 * 13 11 10 16 16 H 1.48503 * 109.47086 * 90.00780 * 15 13 11 17 17 H 1.48507 * 109.47089 * 210.00050 * 15 13 11 18 18 H 1.48493 * 109.47246 * 330.00109 * 15 13 11 19 19 C 1.47076 * 118.23684 * 51.45820 * 10 9 8 20 20 C 1.46891 * 111.00036 * 200.18043 * 7 6 5 21 21 H 1.09001 * 109.46777 * 59.99781 * 1 2 3 22 22 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47095 * 299.99773 * 1 2 3 24 24 H 1.09003 * 109.47095 * 240.00227 * 2 1 3 25 25 H 1.09002 * 109.46651 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46999 * 299.99965 * 3 2 1 27 27 H 1.09003 * 109.46961 * 60.00145 * 3 2 1 28 28 H 1.09005 * 109.47132 * 59.99772 * 5 4 2 29 29 H 1.08998 * 109.46936 * 299.99855 * 5 4 2 30 30 H 1.09002 * 109.46508 * 306.17962 * 6 5 4 31 31 H 1.08989 * 109.47174 * 186.18348 * 6 5 4 32 32 H 1.08999 * 109.49467 * 67.29523 * 8 7 6 33 33 H 1.08997 * 109.51680 * 307.22265 * 8 7 6 34 34 H 1.08998 * 109.62636 * 186.46637 * 9 8 7 35 35 H 1.08992 * 109.63232 * 65.87861 * 9 8 7 36 36 H 0.96995 * 120.00049 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.63101 * 68.25131 * 19 10 9 38 38 H 1.09002 * 109.62659 * 188.83477 * 19 10 9 39 39 H 1.08998 * 109.49375 * 292.70805 * 20 7 6 40 40 H 1.08998 * 109.49487 * 52.79154 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7091 -2.6925 2.2942 7 7 1.6630 -2.5966 3.3210 8 6 0.6113 -3.5973 3.0960 9 6 -0.5432 -3.3485 4.0726 10 7 0.0000 -3.3135 5.4390 11 6 -0.5478 -4.0796 6.4330 12 1 -1.0443 -5.0071 6.1884 13 6 -0.4600 -3.6672 7.7554 14 7 -0.1274 -2.4251 8.0368 15 14 -0.8139 -4.8749 9.1359 16 1 0.4431 -5.5622 9.5267 17 1 -1.3620 -4.1426 10.3059 18 1 -1.8042 -5.8798 8.6727 19 6 1.1433 -2.4291 5.7108 20 6 2.2351 -2.7185 4.6684 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 2.9320 -2.2467 0.1986 29 1 1.2538 -2.5433 0.7125 30 1 3.5960 -2.1537 2.6276 31 1 2.9611 -3.7399 2.1289 32 1 1.0178 -4.5953 3.2601 33 1 0.2455 -3.5173 2.0724 34 1 -1.2731 -4.1537 3.9893 35 1 -1.0180 -2.3947 3.8428 36 1 -0.0664 -2.1368 8.9609 37 1 0.8275 -1.3886 5.6354 38 1 1.5289 -2.6262 6.7112 39 1 2.6190 -3.7287 4.8106 40 1 3.0470 -2.0007 4.7852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:22 Heat of formation + Delta-G solvation = -42.042154 kcal Electronic energy + Delta-G solvation = -18376.867397 eV Core-core repulsion = 15612.511575 eV Total energy + Delta-G solvation = -2764.355821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93408 -38.88609 -36.26711 -33.88862 -33.01369 -31.66095 -30.16930 -28.08326 -27.52025 -24.91709 -24.19696 -22.49652 -22.11734 -20.81697 -18.74578 -17.73602 -17.10569 -16.64551 -16.02952 -15.73039 -15.59486 -15.28421 -15.22939 -14.70984 -14.60772 -14.26895 -13.56379 -13.30011 -13.19549 -13.01342 -12.93608 -12.67624 -12.62492 -12.43316 -12.26710 -12.15808 -12.00832 -11.84010 -11.61557 -11.44563 -11.28242 -10.59539 -10.33635 -9.17076 -8.66851 -7.86893 -5.34470 1.46571 1.47826 1.57253 2.50539 2.87314 3.03716 3.28412 3.68404 3.99657 4.11632 4.23591 4.23813 4.34400 4.37276 4.41851 4.51581 4.54163 4.64875 4.67800 4.71810 4.78762 4.87862 4.89858 4.96886 4.99796 5.01751 5.08549 5.20180 5.35808 5.36704 5.39784 5.60293 5.68884 6.23141 6.30144 6.38361 6.57815 7.12927 7.83043 8.38736 9.19729 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041349 B = 0.005059 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.005414 B = 5533.760166 C = 5599.679507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 C -0.146 4.146 4 O -0.394 6.394 5 C 0.074 3.926 6 C 0.054 3.946 7 N -0.538 5.538 8 C 0.057 3.943 9 C 0.145 3.855 10 N -0.614 5.614 11 C -0.266 4.266 12 H 0.069 0.931 13 C -0.052 4.052 14 N -0.938 5.938 15 Si 0.973 3.027 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.268 1.268 19 C 0.187 3.813 20 C 0.053 3.947 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.010 0.990 36 H 0.251 0.749 37 H -0.007 1.007 38 H 0.058 0.942 39 H 0.021 0.979 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 1.547 -17.675 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 C -0.203 4.203 4 O -0.314 6.314 5 C -0.003 4.003 6 C -0.074 4.074 7 N -0.263 5.263 8 C -0.072 4.072 9 C 0.019 3.981 10 N -0.338 5.338 11 C -0.396 4.396 12 H 0.086 0.914 13 C -0.247 4.247 14 N -0.585 5.585 15 Si 0.800 3.200 16 H -0.211 1.211 17 H -0.221 1.221 18 H -0.192 1.192 19 C 0.061 3.939 20 C -0.076 4.076 21 H 0.101 0.899 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.542 2.161 -17.394 18.383 hybrid contribution -0.083 -1.167 1.056 1.576 sum 5.458 0.994 -16.337 17.253 Atomic orbital electron populations 1.22260 0.96301 1.01975 1.02279 1.22242 0.93685 0.94306 0.88209 1.21854 1.01606 0.94233 1.02633 1.88049 1.86565 1.20387 1.36394 1.22569 0.99707 0.81724 0.96331 1.22219 0.94260 0.99216 0.91713 1.61813 1.12451 1.49982 1.02048 1.22470 0.93223 0.92175 0.99361 1.21102 0.94364 0.97947 0.84645 1.44413 1.33801 1.49757 1.05842 1.19575 1.32587 1.00235 0.87195 0.91375 1.25868 1.01370 0.97165 1.00298 1.70193 1.53953 1.16267 1.18038 0.85192 0.77927 0.78296 0.78559 1.21068 1.22061 1.19215 1.20697 0.86309 0.90985 0.95886 1.22636 0.97152 0.98491 0.89326 0.89931 0.93110 0.93832 0.90861 0.92048 0.89337 0.93419 0.90930 0.93458 0.90435 0.92226 0.95658 0.89320 0.92131 0.97243 0.94041 0.98874 0.92381 0.96059 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.53 71.98 0.69 -2.98 16 2 C 0.07 1.56 3.34 30.60 0.10 1.66 16 3 C -0.15 -2.74 9.56 71.98 0.69 -2.05 16 4 O -0.39 -11.23 9.95 -148.98 -1.48 -12.71 16 5 C 0.07 1.76 5.95 71.98 0.43 2.19 16 6 C 0.05 1.48 5.39 86.30 0.46 1.95 16 7 N -0.54 -19.74 4.52 -894.33 -4.04 -23.78 16 8 C 0.06 2.05 5.45 86.38 0.47 2.52 16 9 C 0.15 6.49 6.69 86.35 0.58 7.06 16 10 N -0.61 -32.95 3.03 -697.24 -2.11 -35.06 16 11 C -0.27 -15.23 9.64 84.03 0.81 -14.42 16 12 H 0.07 3.77 7.87 -2.91 -0.02 3.74 16 13 C -0.05 -2.99 4.98 84.86 0.42 -2.57 16 14 N -0.94 -57.56 11.08 21.65 0.24 -57.32 16 15 Si 0.97 45.87 29.58 68.60 2.03 47.90 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C 0.19 9.80 5.43 86.50 0.47 10.27 16 20 C 0.05 2.20 5.60 86.54 0.48 2.68 16 21 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.12 7.87 -2.39 -0.02 1.10 16 23 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 29 H 0.05 1.12 6.40 -2.39 -0.02 1.10 16 30 H 0.08 2.12 7.77 -2.39 -0.02 2.11 16 31 H 0.06 1.46 8.00 -2.39 -0.02 1.44 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 2.67 6.62 -2.39 -0.02 2.65 16 34 H 0.06 2.56 7.95 -2.39 -0.02 2.54 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H 0.06 3.36 6.11 -2.39 -0.01 3.34 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 2.84 7.90 -2.39 -0.02 2.82 16 Total: -1.00 -67.87 314.97 1.21 -66.66 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.97 Total: 7.99 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.60 Total: 6.32 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.91 Total: -116.16 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.48 Total: -12.71 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -67.87 1.21 -66.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.616 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds