Wall clock time and date at job start Sun Mar 29 2020 22:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47721 * 2 1 4 4 C 1.53008 * 109.47241 * 119.99773 * 2 1 3 5 5 N 1.46907 * 109.46507 * 296.29358 * 4 2 1 6 6 C 1.47013 * 111.00101 * 288.15115 * 5 4 2 7 7 C 1.53096 * 109.25780 * 177.61179 * 6 5 4 8 8 O 1.43018 * 109.25836 * 56.84627 * 7 6 5 9 9 C 1.43010 * 113.73926 * 301.33282 * 8 7 6 10 10 C 1.47022 * 110.99320 * 164.51769 * 5 4 2 11 11 N 1.46898 * 109.47455 * 239.99750 * 2 1 3 12 12 C 1.46900 * 111.00505 * 185.03299 * 11 2 1 13 13 C 1.46892 * 111.00163 * 61.07457 * 11 2 1 14 14 C 1.50709 * 109.47307 * 190.00327 * 13 11 2 15 15 H 1.07996 * 119.99687 * 0.02562 * 14 13 11 16 16 C 1.37874 * 120.00007 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00065 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00088 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47007 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46965 * 120.00032 * 18 16 14 21 21 H 1.48494 * 109.47504 * 240.00088 * 18 16 14 22 22 H 1.09003 * 109.47012 * 60.00678 * 1 2 3 23 23 H 1.09007 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47389 * 300.00522 * 1 2 3 25 25 H 1.08999 * 109.46886 * 56.29051 * 4 2 1 26 26 H 1.08993 * 109.47292 * 176.29591 * 4 2 1 27 27 H 1.08998 * 109.50637 * 297.54634 * 6 5 4 28 28 H 1.08999 * 109.50559 * 57.67435 * 6 5 4 29 29 H 1.08996 * 109.50553 * 296.91502 * 7 6 5 30 30 H 1.08994 * 109.54217 * 176.80416 * 7 6 5 31 31 H 1.09001 * 109.50730 * 298.73058 * 9 8 7 32 32 H 1.08999 * 109.53827 * 178.62670 * 9 8 7 33 33 H 1.08998 * 109.50536 * 302.32603 * 10 5 4 34 34 H 1.08994 * 109.50870 * 62.46009 * 10 5 4 35 35 H 1.09005 * 109.47423 * 67.03974 * 12 11 2 36 36 H 1.09001 * 109.46849 * 307.04850 * 12 11 2 37 37 H 1.08993 * 109.47569 * 187.04199 * 12 11 2 38 38 H 1.09000 * 109.47292 * 310.00464 * 13 11 2 39 39 H 1.08997 * 109.47320 * 70.00464 * 13 11 2 40 40 H 0.97001 * 120.00123 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6247 0.0212 2.4470 6 6 2.3843 1.2728 2.5808 7 6 1.8797 2.0413 3.8050 8 8 1.9955 1.2111 4.9638 9 6 1.2676 -0.0161 4.8679 10 6 1.7660 -0.8055 3.6545 11 7 2.0197 -0.6925 -1.1994 12 6 3.4832 -0.8172 -1.1747 13 6 1.5699 -0.0118 -2.4209 14 6 1.8765 -0.8740 -3.6184 15 1 2.3571 -1.8319 -3.4852 16 6 1.5436 -0.4397 -4.8839 17 7 0.9588 0.7271 -5.0461 18 14 1.9243 -1.5079 -6.3682 19 1 2.5799 -2.7627 -5.9199 20 1 0.6623 -1.8358 -7.0788 21 1 2.8329 -0.7747 -7.2858 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6234 -1.7279 1.2832 26 1 3.1279 -0.7791 1.2168 27 1 3.4428 1.0446 2.7052 28 1 2.2449 1.8804 1.6867 29 1 0.8354 2.3161 3.6571 30 1 2.4774 2.9424 3.9416 31 1 0.2054 0.1989 4.7510 32 1 1.4225 -0.6035 5.7729 33 1 1.1752 -1.7149 3.5442 34 1 2.8146 -1.0669 3.7961 35 1 3.7771 -1.4888 -0.3680 36 1 3.9287 0.1640 -1.0109 37 1 3.8297 -1.2193 -2.1266 38 1 0.4955 0.1631 -2.3647 39 1 2.0887 0.9419 -2.5174 40 1 0.7248 1.0328 -5.9364 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091513279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:19 Heat of formation + Delta-G solvation = -32.637205 kcal Electronic energy + Delta-G solvation = -18317.485787 eV Core-core repulsion = 15553.537795 eV Total energy + Delta-G solvation = -2763.947992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.68851 -37.55884 -35.29987 -32.65873 -31.30397 -30.61178 -28.23945 -27.07848 -24.49457 -24.27119 -24.08149 -21.57586 -20.44467 -19.03800 -16.71295 -16.43366 -16.18604 -15.24465 -15.13280 -14.99364 -14.80441 -14.41126 -13.89681 -13.43315 -13.02204 -12.97136 -12.51792 -11.97410 -11.92512 -11.53976 -11.48833 -11.38173 -11.25314 -10.85294 -10.77715 -10.76069 -10.50499 -10.34037 -10.17671 -9.87314 -9.55108 -9.13788 -8.41677 -8.31199 -7.20498 -6.01614 -4.02340 3.31225 3.38629 3.43411 3.66204 3.82470 4.44147 4.77889 4.89925 4.94426 5.04346 5.11938 5.17877 5.33607 5.39756 5.45219 5.47409 5.54370 5.69104 5.72942 5.86743 5.92081 6.08620 6.12056 6.16738 6.29167 6.51129 6.66431 6.76889 6.85805 6.96311 7.00247 7.06492 7.37266 7.37426 7.82725 8.13457 8.23217 8.58385 9.05608 9.61509 11.09355 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054604 B = 0.004530 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.659502 B = 6179.862758 C = 6290.378409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.088 3.912 3 H 0.026 0.974 4 C 0.063 3.937 5 N -0.533 5.533 6 C 0.015 3.985 7 C 0.065 3.935 8 O -0.389 6.389 9 C 0.065 3.935 10 C 0.019 3.981 11 N -0.537 5.537 12 C 0.034 3.966 13 C 0.190 3.810 14 C -0.506 4.506 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.007 0.993 37 H 0.076 0.924 38 H 0.038 0.962 39 H -0.012 1.012 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 -0.111 17.107 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.021 4.021 3 H 0.044 0.956 4 C -0.065 4.065 5 N -0.259 5.259 6 C -0.113 4.113 7 C -0.012 4.012 8 O -0.308 6.308 9 C -0.013 4.013 10 C -0.110 4.110 11 N -0.263 5.263 12 C -0.115 4.115 13 C 0.065 3.935 14 C -0.544 4.544 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.212 1.212 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.005 0.995 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.827 -0.298 17.072 17.094 hybrid contribution 1.277 0.039 -1.168 1.731 sum 2.104 -0.259 15.903 16.044 Atomic orbital electron populations 1.21726 0.94160 1.01924 1.01124 1.21471 0.96339 0.94579 0.89732 0.95587 1.22261 0.97843 0.97644 0.88758 1.62124 1.56019 1.05255 1.02460 1.22829 0.95897 0.92849 0.99725 1.22665 1.01339 0.92938 0.84273 1.87953 1.72388 1.31253 1.39214 1.22651 0.95910 0.85264 0.97425 1.22763 1.00267 0.97121 0.90808 1.62138 1.09463 1.52140 1.02518 1.22262 0.89200 0.98112 1.01882 1.19796 0.96348 0.92255 0.85067 1.21219 1.38714 1.04128 0.90377 0.91868 1.24984 0.95412 0.95205 0.99050 1.69971 1.41988 1.19359 1.22555 0.86461 0.77984 0.80506 0.82585 1.19687 1.21007 1.21163 0.92384 0.92696 0.92495 0.90140 0.94592 0.94225 0.89286 0.92185 0.88651 0.92252 0.88733 0.89586 0.94263 0.93712 0.97491 0.90522 0.94358 0.99467 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.89 37.15 0.33 -2.01 16 2 C 0.09 1.60 2.13 -67.71 -0.14 1.46 16 3 H 0.03 0.50 6.59 -51.93 -0.34 0.16 16 4 C 0.06 0.95 4.10 -3.82 -0.02 0.93 16 5 N -0.53 -7.05 4.08 -234.30 -0.96 -8.01 16 6 C 0.02 0.19 5.47 -3.71 -0.02 0.17 16 7 C 0.06 0.71 7.01 37.21 0.26 0.97 16 8 O -0.39 -4.70 10.83 -35.23 -0.38 -5.09 16 9 C 0.06 0.65 7.01 37.21 0.26 0.91 16 10 C 0.02 0.21 5.62 -3.71 -0.02 0.19 16 11 N -0.54 -11.68 4.62 -236.33 -1.09 -12.77 16 12 C 0.03 0.67 8.75 60.06 0.53 1.20 16 13 C 0.19 4.99 4.55 -4.98 -0.02 4.96 16 14 C -0.51 -14.28 8.36 -34.44 -0.29 -14.56 16 15 H 0.06 1.77 7.19 -52.49 -0.38 1.39 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 18 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H 0.06 1.15 6.22 -51.93 -0.32 0.83 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.90 7.71 -51.93 -0.40 0.50 16 25 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 26 H 0.04 0.55 6.19 -51.93 -0.32 0.23 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.16 6.55 -51.93 -0.34 0.82 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.76 6.58 -51.93 -0.34 0.42 16 36 H 0.01 0.13 8.11 -51.93 -0.42 -0.29 16 37 H 0.08 1.63 6.63 -51.93 -0.34 1.29 16 38 H 0.04 1.06 5.87 -51.93 -0.30 0.76 16 39 H -0.01 -0.35 8.12 -51.93 -0.42 -0.78 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -30.28 308.06 -8.17 -38.44 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.86 Total: -3.50 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.77 Total: -4.33 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -1.31 Total: -46.85 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.38 Total: -5.09 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.28 -8.17 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091513279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.806 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds