Wall clock time and date at job start Sun Mar 29 2020 22:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47721 * 2 1 4 4 C 1.53008 * 109.47241 * 119.99773 * 2 1 3 5 5 N 1.46907 * 109.46507 * 296.29358 * 4 2 1 6 6 C 1.47013 * 111.00101 * 288.15115 * 5 4 2 7 7 C 1.53096 * 109.25780 * 177.61179 * 6 5 4 8 8 O 1.43018 * 109.25836 * 56.84627 * 7 6 5 9 9 C 1.43010 * 113.73926 * 301.33282 * 8 7 6 10 10 C 1.47022 * 110.99320 * 164.51769 * 5 4 2 11 11 N 1.46898 * 109.47455 * 239.99750 * 2 1 3 12 12 C 1.46900 * 111.00505 * 185.03299 * 11 2 1 13 13 C 1.46892 * 111.00163 * 61.07457 * 11 2 1 14 14 C 1.50709 * 109.47307 * 190.00327 * 13 11 2 15 15 H 1.07996 * 119.99687 * 0.02562 * 14 13 11 16 16 C 1.37874 * 120.00007 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00065 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00088 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47007 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46965 * 120.00032 * 18 16 14 21 21 H 1.48494 * 109.47504 * 240.00088 * 18 16 14 22 22 H 1.09003 * 109.47012 * 60.00678 * 1 2 3 23 23 H 1.09007 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47389 * 300.00522 * 1 2 3 25 25 H 1.08999 * 109.46886 * 56.29051 * 4 2 1 26 26 H 1.08993 * 109.47292 * 176.29591 * 4 2 1 27 27 H 1.08998 * 109.50637 * 297.54634 * 6 5 4 28 28 H 1.08999 * 109.50559 * 57.67435 * 6 5 4 29 29 H 1.08996 * 109.50553 * 296.91502 * 7 6 5 30 30 H 1.08994 * 109.54217 * 176.80416 * 7 6 5 31 31 H 1.09001 * 109.50730 * 298.73058 * 9 8 7 32 32 H 1.08999 * 109.53827 * 178.62670 * 9 8 7 33 33 H 1.08998 * 109.50536 * 302.32603 * 10 5 4 34 34 H 1.08994 * 109.50870 * 62.46009 * 10 5 4 35 35 H 1.09005 * 109.47423 * 67.03974 * 12 11 2 36 36 H 1.09001 * 109.46849 * 307.04850 * 12 11 2 37 37 H 1.08993 * 109.47569 * 187.04199 * 12 11 2 38 38 H 1.09000 * 109.47292 * 310.00464 * 13 11 2 39 39 H 1.08997 * 109.47320 * 70.00464 * 13 11 2 40 40 H 0.97001 * 120.00123 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6247 0.0212 2.4470 6 6 2.3843 1.2728 2.5808 7 6 1.8797 2.0413 3.8050 8 8 1.9955 1.2111 4.9638 9 6 1.2676 -0.0161 4.8679 10 6 1.7660 -0.8055 3.6545 11 7 2.0197 -0.6925 -1.1994 12 6 3.4832 -0.8172 -1.1747 13 6 1.5699 -0.0118 -2.4209 14 6 1.8765 -0.8740 -3.6184 15 1 2.3571 -1.8319 -3.4852 16 6 1.5436 -0.4397 -4.8839 17 7 0.9588 0.7271 -5.0461 18 14 1.9243 -1.5079 -6.3682 19 1 2.5799 -2.7627 -5.9199 20 1 0.6623 -1.8358 -7.0788 21 1 2.8329 -0.7747 -7.2858 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6234 -1.7279 1.2832 26 1 3.1279 -0.7791 1.2168 27 1 3.4428 1.0446 2.7052 28 1 2.2449 1.8804 1.6867 29 1 0.8354 2.3161 3.6571 30 1 2.4774 2.9424 3.9416 31 1 0.2054 0.1989 4.7510 32 1 1.4225 -0.6035 5.7729 33 1 1.1752 -1.7149 3.5442 34 1 2.8146 -1.0669 3.7961 35 1 3.7771 -1.4888 -0.3680 36 1 3.9287 0.1640 -1.0109 37 1 3.8297 -1.2193 -2.1266 38 1 0.4955 0.1631 -2.3647 39 1 2.0887 0.9419 -2.5174 40 1 0.7248 1.0328 -5.9364 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091513279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:18 Heat of formation + Delta-G solvation = -54.644836 kcal Electronic energy + Delta-G solvation = -18318.440110 eV Core-core repulsion = 15553.537795 eV Total energy + Delta-G solvation = -2764.902315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69146 -39.02414 -36.54286 -34.71452 -32.32495 -32.01200 -29.80181 -28.65384 -26.26569 -25.58875 -25.00090 -23.32635 -21.45448 -20.55464 -18.55492 -17.79316 -17.08407 -16.66320 -16.43659 -16.28142 -15.97806 -15.77802 -15.44500 -14.84941 -14.57588 -14.39040 -13.93287 -13.57455 -13.24235 -13.02625 -12.95619 -12.71631 -12.66010 -12.45845 -12.29592 -12.25257 -12.15904 -11.78232 -11.48816 -11.44505 -11.20983 -10.63731 -10.58255 -9.38825 -9.00398 -8.20012 -6.29616 1.40868 1.41655 1.55174 2.39703 2.65022 2.95917 3.12627 3.44589 3.83062 3.93867 4.00712 4.08636 4.19429 4.30482 4.36363 4.40438 4.47533 4.61851 4.65839 4.73940 4.75270 4.80483 4.82626 4.91601 4.99382 5.03354 5.07868 5.13381 5.28535 5.32725 5.41067 5.66430 5.90880 5.98207 6.08174 6.18158 6.35132 6.66232 6.86941 7.39808 8.91421 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054604 B = 0.004530 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.659502 B = 6179.862758 C = 6290.378409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.087 3.913 3 H 0.016 0.984 4 C 0.077 3.923 5 N -0.539 5.539 6 C 0.016 3.984 7 C 0.068 3.932 8 O -0.403 6.403 9 C 0.064 3.936 10 C 0.019 3.981 11 N -0.543 5.543 12 C 0.038 3.962 13 C 0.206 3.794 14 C -0.523 4.523 15 H 0.063 0.937 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.279 1.279 22 H 0.028 0.972 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.007 0.993 37 H 0.057 0.943 38 H 0.017 0.983 39 H -0.046 1.046 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -1.280 18.238 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.021 4.021 3 H 0.034 0.966 4 C -0.051 4.051 5 N -0.265 5.265 6 C -0.113 4.113 7 C -0.009 4.009 8 O -0.322 6.322 9 C -0.013 4.013 10 C -0.109 4.109 11 N -0.269 5.269 12 C -0.110 4.110 13 C 0.080 3.920 14 C -0.561 4.561 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.205 1.205 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.035 0.965 39 H -0.028 1.028 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.223 -1.475 18.233 18.334 hybrid contribution 1.145 0.434 -1.445 1.894 sum 2.367 -1.041 16.788 16.986 Atomic orbital electron populations 1.21626 0.93917 1.01703 1.00661 1.21545 0.96525 0.94257 0.89803 0.96615 1.22004 0.97599 0.97368 0.88081 1.62088 1.56120 1.05638 1.02633 1.22836 0.95738 0.92615 1.00089 1.22704 1.01724 0.93152 0.83306 1.87942 1.72806 1.31993 1.39479 1.22807 0.95814 0.84742 0.97929 1.22857 1.00566 0.97437 0.90044 1.62075 1.10832 1.51805 1.02146 1.22252 0.87847 0.98793 1.02125 1.19435 0.94652 0.90887 0.87020 1.21523 1.38819 1.04311 0.91457 0.91885 1.25908 0.94998 0.96499 1.02269 1.70098 1.42868 1.21112 1.23506 0.85334 0.77981 0.78829 0.78466 1.18686 1.20385 1.20477 0.95274 0.92707 0.90375 0.89780 0.94557 0.94553 0.90426 0.92008 0.86984 0.91962 0.86357 0.88327 0.94368 0.90408 0.97422 0.92380 0.96505 1.02835 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.89 71.98 0.64 -3.70 16 2 C 0.09 3.18 2.13 44.92 0.10 3.28 16 3 H 0.02 0.62 6.59 -2.39 -0.02 0.60 16 4 C 0.08 2.22 4.10 86.30 0.35 2.58 16 5 N -0.54 -13.28 4.08 -895.19 -3.65 -16.94 16 6 C 0.02 0.37 5.47 86.31 0.47 0.84 16 7 C 0.07 1.37 7.01 72.01 0.50 1.87 16 8 O -0.40 -8.81 10.83 -148.98 -1.61 -10.42 16 9 C 0.06 1.11 7.01 72.01 0.50 1.62 16 10 C 0.02 0.37 5.62 86.31 0.49 0.86 16 11 N -0.54 -23.83 4.62 -901.63 -4.17 -27.99 16 12 C 0.04 1.49 8.75 127.69 1.12 2.61 16 13 C 0.21 11.19 4.55 85.56 0.39 11.58 16 14 C -0.52 -29.99 8.36 25.60 0.21 -29.77 16 15 H 0.06 3.54 7.19 -2.91 -0.02 3.52 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.94 -56.85 13.29 21.45 0.28 -56.57 16 18 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H 0.03 1.18 6.22 -2.39 -0.01 1.17 16 23 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.08 2.41 7.71 -2.39 -0.02 2.40 16 25 H 0.08 2.38 7.93 -2.39 -0.02 2.36 16 26 H 0.04 1.04 6.19 -2.39 -0.01 1.03 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 2.00 6.55 -2.39 -0.02 1.99 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.70 8.04 -2.39 -0.02 1.68 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 2.51 6.58 -2.38 -0.02 2.50 16 36 H 0.01 0.28 8.11 -2.39 -0.02 0.26 16 37 H 0.06 2.47 6.63 -2.39 -0.02 2.45 16 38 H 0.02 0.98 5.87 -2.39 -0.01 0.97 16 39 H -0.05 -2.75 8.12 -2.39 -0.02 -2.77 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -65.09 308.06 -0.89 -65.98 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.99 Total: 7.07 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 5.24 Total: -7.73 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -7.54 Total: -101.50 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.61 Total: -10.42 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.09 -0.89 -65.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091513279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.337 kcal (2) G-P(sol) polarization free energy of solvation -65.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds