Wall clock time and date at job start Sun Mar 29 2020 22:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47283 * 2 1 4 4 H 1.09006 * 109.49292 * 55.26284 * 3 2 1 5 5 C 1.52791 * 109.58900 * 295.34178 * 3 2 1 6 6 N 1.47078 * 108.76452 * 186.35447 * 5 3 2 7 7 C 1.36931 * 120.87765 * 231.11760 * 6 5 3 8 8 H 1.08002 * 120.00518 * 25.73599 * 7 6 5 9 9 C 1.38809 * 119.99920 * 206.00486 * 7 6 5 10 10 N 1.31617 * 120.00058 * 14.88511 * 9 7 6 11 11 Si 1.86810 * 120.00167 * 194.88506 * 9 7 6 12 12 H 1.48500 * 109.46963 * 94.98312 * 11 9 7 13 13 H 1.48499 * 109.47114 * 214.98417 * 11 9 7 14 14 H 1.48498 * 109.46886 * 334.98431 * 11 9 7 15 15 C 1.47077 * 118.23686 * 50.85061 * 6 5 3 16 16 C 1.53232 * 108.52403 * 309.08436 * 15 6 5 17 17 N 1.46894 * 109.49609 * 175.31429 * 3 2 1 18 18 C 1.46901 * 111.00109 * 307.23943 * 17 3 2 19 19 C 1.52998 * 109.47349 * 299.61814 * 18 17 3 20 20 H 1.09000 * 109.47115 * 308.01884 * 19 18 17 21 21 C 1.53001 * 109.47395 * 188.01817 * 19 18 17 22 22 O 1.42904 * 109.47006 * 68.01882 * 19 18 17 23 23 H 1.08996 * 109.46509 * 186.11277 * 1 2 3 24 24 H 1.08996 * 109.46914 * 306.11373 * 1 2 3 25 25 H 1.09000 * 109.46837 * 66.11170 * 1 2 3 26 26 H 1.09000 * 109.47714 * 239.99962 * 2 1 3 27 27 H 1.08999 * 109.47210 * 119.99935 * 2 1 3 28 28 H 1.08998 * 109.55236 * 66.53778 * 5 3 2 29 29 H 1.08999 * 109.45299 * 306.11377 * 5 3 2 30 30 H 0.97004 * 119.99916 * 179.97438 * 10 9 7 31 31 H 1.09005 * 109.62946 * 68.79834 * 15 6 5 32 32 H 1.09005 * 109.62490 * 189.37155 * 15 6 5 33 33 H 1.09004 * 109.49606 * 173.78978 * 16 15 6 34 34 H 1.08993 * 109.49558 * 293.84319 * 16 15 6 35 35 H 1.08997 * 109.47083 * 59.61878 * 18 17 3 36 36 H 1.09000 * 109.47161 * 179.61817 * 18 17 3 37 37 H 1.08996 * 109.47131 * 59.99902 * 21 19 18 38 38 H 1.09002 * 109.47327 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.47044 * 300.00111 * 21 19 18 40 40 H 0.96689 * 114.00307 * 66.40289 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6093 1.9806 0.8444 5 6 1.6299 2.1308 -1.3010 6 7 2.2562 3.4607 -1.3504 7 6 1.5104 4.5795 -1.6092 8 1 0.4559 4.5916 -1.3757 9 6 2.1083 5.6963 -2.1766 10 7 3.2971 5.5953 -2.7325 11 14 1.2259 7.3426 -2.1515 12 1 1.6835 8.1316 -0.9796 13 1 1.5315 8.0872 -3.3994 14 1 -0.2388 7.1177 -2.0553 15 6 3.7037 3.5576 -1.1086 16 6 4.0312 2.8139 0.1905 17 7 3.5046 1.4446 0.1131 18 6 3.9449 0.6455 1.2645 19 6 3.3607 1.2367 2.5490 20 1 3.5875 2.3018 2.5947 21 6 3.9749 0.5320 3.7602 22 8 1.9438 1.0505 2.5575 23 1 -0.3632 -1.0218 0.1094 24 1 -0.3633 0.6057 0.8302 25 1 -0.3633 0.4162 -0.9396 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.5454 2.2354 -1.3322 29 1 1.9678 1.5351 -2.1490 30 1 3.7148 6.3757 -3.1294 31 1 4.2448 3.1018 -1.9379 32 1 3.9896 4.6051 -1.0130 33 1 5.1120 2.7807 0.3282 34 1 3.5731 3.3331 1.0322 35 1 3.5994 -0.3816 1.1473 36 1 5.0334 0.6585 1.3208 37 1 5.0556 0.6740 3.7537 38 1 3.5583 0.9529 4.6753 39 1 3.7481 -0.5331 3.7145 40 1 1.6690 0.1254 2.6174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106906745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:14 Heat of formation + Delta-G solvation = -21.350845 kcal Electronic energy + Delta-G solvation = -19287.466064 eV Core-core repulsion = 16524.007485 eV Total energy + Delta-G solvation = -2763.458579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.43623 -36.63043 -34.17836 -33.49127 -31.33264 -30.50264 -28.61511 -26.99577 -24.50949 -23.77426 -22.66141 -21.44154 -20.35820 -18.63845 -16.83544 -16.19389 -15.89302 -14.88281 -14.76447 -14.43921 -14.23760 -13.90194 -13.29732 -13.01746 -12.82396 -12.49958 -12.37085 -12.11372 -11.71359 -11.55985 -11.23479 -11.11787 -10.89672 -10.85340 -10.73376 -10.52170 -10.27974 -10.15047 -9.96394 -9.79330 -9.60948 -9.32981 -8.43022 -7.47087 -6.55943 -5.69739 -3.10788 3.42195 3.48822 3.50589 4.39245 4.52547 4.58108 4.88444 5.15588 5.20835 5.37912 5.39698 5.46893 5.51410 5.68301 5.74284 5.77570 5.90179 5.97907 6.08506 6.11534 6.17446 6.23471 6.33733 6.44649 6.48889 6.60100 6.64785 6.77364 6.84155 7.13240 7.43043 7.68401 7.75894 7.79989 7.85284 7.94072 8.52019 9.30109 9.93796 10.52027 11.38736 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.007386 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.458847 B = 3789.863868 C = 4125.344483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.066 3.934 4 H 0.070 0.930 5 C 0.154 3.846 6 N -0.595 5.595 7 C -0.245 4.245 8 H 0.066 0.934 9 C -0.002 4.002 10 N -0.907 5.907 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.177 3.823 16 C 0.032 3.968 17 N -0.525 5.525 18 C 0.021 3.979 19 C 0.062 3.938 20 H 0.098 0.902 21 C -0.181 4.181 22 O -0.551 6.551 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.018 0.982 30 H 0.252 0.748 31 H 0.023 0.977 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 -11.570 10.092 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.043 4.043 4 H 0.087 0.913 5 C 0.028 3.972 6 N -0.318 5.318 7 C -0.375 4.375 8 H 0.083 0.917 9 C -0.200 4.200 10 N -0.553 5.553 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.205 1.205 15 C 0.051 3.949 16 C -0.097 4.097 17 N -0.248 5.248 18 C -0.108 4.108 19 C 0.002 3.998 20 H 0.116 0.884 21 C -0.240 4.240 22 O -0.357 6.357 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.662 -10.973 9.492 14.524 hybrid contribution -0.512 0.624 0.800 1.137 sum 0.150 -10.349 10.292 14.596 Atomic orbital electron populations 1.21754 0.96053 1.00493 1.02347 1.21595 0.95337 0.97045 1.00773 1.22300 0.86598 0.95029 1.00365 0.91258 1.20984 0.95998 0.86943 0.93318 1.44095 1.04438 1.01273 1.81999 1.19250 0.93427 0.91105 1.33669 0.91669 1.25004 0.97571 0.99241 0.98169 1.70011 1.16477 1.28647 1.40134 0.86254 0.79157 0.84299 0.76994 1.21638 1.21801 1.20464 1.20895 0.84161 0.99407 0.90438 1.22921 0.97534 0.88121 1.01114 1.62196 1.11304 1.13447 1.37873 1.22951 1.00085 0.98533 0.89253 1.22741 0.81140 1.01360 0.94563 0.88435 1.22472 1.01676 1.00714 0.99094 1.86737 1.21583 1.30851 1.96496 0.93631 0.92572 0.92476 0.92366 0.92983 0.92888 0.96424 0.93752 0.95850 0.89103 0.92481 0.95541 0.90738 0.90871 0.91732 0.92239 0.92554 0.78728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.51 37.16 0.35 -1.62 16 2 C -0.11 -1.58 4.46 -26.73 -0.12 -1.70 16 3 C 0.07 1.22 1.36 -67.82 -0.09 1.13 16 4 H 0.07 1.42 5.83 -51.93 -0.30 1.11 16 5 C 0.15 3.45 5.53 -3.83 -0.02 3.43 16 6 N -0.60 -15.70 3.05 -172.29 -0.53 -16.22 16 7 C -0.24 -6.98 9.65 -15.06 -0.15 -7.12 16 8 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 9 C 0.00 -0.06 5.00 -17.43 -0.09 -0.15 16 10 N -0.91 -26.98 10.99 55.49 0.61 -26.37 16 11 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 C 0.18 4.45 5.42 -3.61 -0.02 4.43 16 16 C 0.03 0.65 5.12 -3.70 -0.02 0.63 16 17 N -0.53 -9.53 4.68 -226.63 -1.06 -10.59 16 18 C 0.02 0.29 4.80 -3.82 -0.02 0.27 16 19 C 0.06 0.82 3.30 -26.73 -0.09 0.73 16 20 H 0.10 1.51 6.29 -51.93 -0.33 1.18 16 21 C -0.18 -1.80 9.47 37.16 0.35 -1.45 16 22 O -0.55 -7.60 9.47 -35.23 -0.33 -7.94 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.81 7.03 -51.93 -0.37 0.45 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.64 4.19 -51.93 -0.22 0.42 16 28 H 0.05 1.16 6.85 -51.93 -0.36 0.81 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.51 6.02 -51.93 -0.31 2.20 16 33 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.03 0.56 6.61 -51.93 -0.34 0.22 16 35 H 0.07 0.94 6.08 -51.93 -0.32 0.62 16 36 H 0.07 0.95 8.07 -51.93 -0.42 0.54 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.37 3.82 7.47 45.56 0.34 4.16 16 LS Contribution 296.54 15.07 4.47 4.47 Total: -1.00 -30.85 296.54 -7.74 -38.59 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.97 Total: 2.20 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 0.09 Total: -1.41 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.98 Total: -53.18 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.33 Total: -7.94 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.85 -7.74 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106906745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.240 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds