Wall clock time and date at job start Sun Mar 29 2020 22:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47283 * 2 1 4 4 H 1.09006 * 109.49292 * 55.26284 * 3 2 1 5 5 C 1.52791 * 109.58900 * 295.34178 * 3 2 1 6 6 N 1.47078 * 108.76452 * 186.35447 * 5 3 2 7 7 C 1.36931 * 120.87765 * 231.11760 * 6 5 3 8 8 H 1.08002 * 120.00518 * 25.73599 * 7 6 5 9 9 C 1.38809 * 119.99920 * 206.00486 * 7 6 5 10 10 N 1.31617 * 120.00058 * 14.88511 * 9 7 6 11 11 Si 1.86810 * 120.00167 * 194.88506 * 9 7 6 12 12 H 1.48500 * 109.46963 * 94.98312 * 11 9 7 13 13 H 1.48499 * 109.47114 * 214.98417 * 11 9 7 14 14 H 1.48498 * 109.46886 * 334.98431 * 11 9 7 15 15 C 1.47077 * 118.23686 * 50.85061 * 6 5 3 16 16 C 1.53232 * 108.52403 * 309.08436 * 15 6 5 17 17 N 1.46894 * 109.49609 * 175.31429 * 3 2 1 18 18 C 1.46901 * 111.00109 * 307.23943 * 17 3 2 19 19 C 1.52998 * 109.47349 * 299.61814 * 18 17 3 20 20 H 1.09000 * 109.47115 * 308.01884 * 19 18 17 21 21 C 1.53001 * 109.47395 * 188.01817 * 19 18 17 22 22 O 1.42904 * 109.47006 * 68.01882 * 19 18 17 23 23 H 1.08996 * 109.46509 * 186.11277 * 1 2 3 24 24 H 1.08996 * 109.46914 * 306.11373 * 1 2 3 25 25 H 1.09000 * 109.46837 * 66.11170 * 1 2 3 26 26 H 1.09000 * 109.47714 * 239.99962 * 2 1 3 27 27 H 1.08999 * 109.47210 * 119.99935 * 2 1 3 28 28 H 1.08998 * 109.55236 * 66.53778 * 5 3 2 29 29 H 1.08999 * 109.45299 * 306.11377 * 5 3 2 30 30 H 0.97004 * 119.99916 * 179.97438 * 10 9 7 31 31 H 1.09005 * 109.62946 * 68.79834 * 15 6 5 32 32 H 1.09005 * 109.62490 * 189.37155 * 15 6 5 33 33 H 1.09004 * 109.49606 * 173.78978 * 16 15 6 34 34 H 1.08993 * 109.49558 * 293.84319 * 16 15 6 35 35 H 1.08997 * 109.47083 * 59.61878 * 18 17 3 36 36 H 1.09000 * 109.47161 * 179.61817 * 18 17 3 37 37 H 1.08996 * 109.47131 * 59.99902 * 21 19 18 38 38 H 1.09002 * 109.47327 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.47044 * 300.00111 * 21 19 18 40 40 H 0.96689 * 114.00307 * 66.40289 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6093 1.9806 0.8444 5 6 1.6299 2.1308 -1.3010 6 7 2.2562 3.4607 -1.3504 7 6 1.5104 4.5795 -1.6092 8 1 0.4559 4.5916 -1.3757 9 6 2.1083 5.6963 -2.1766 10 7 3.2971 5.5953 -2.7325 11 14 1.2259 7.3426 -2.1515 12 1 1.6835 8.1316 -0.9796 13 1 1.5315 8.0872 -3.3994 14 1 -0.2388 7.1177 -2.0553 15 6 3.7037 3.5576 -1.1086 16 6 4.0312 2.8139 0.1905 17 7 3.5046 1.4446 0.1131 18 6 3.9449 0.6455 1.2645 19 6 3.3607 1.2367 2.5490 20 1 3.5875 2.3018 2.5947 21 6 3.9749 0.5320 3.7602 22 8 1.9438 1.0505 2.5575 23 1 -0.3632 -1.0218 0.1094 24 1 -0.3633 0.6057 0.8302 25 1 -0.3633 0.4162 -0.9396 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.5454 2.2354 -1.3322 29 1 1.9678 1.5351 -2.1490 30 1 3.7148 6.3757 -3.1294 31 1 4.2448 3.1018 -1.9379 32 1 3.9896 4.6051 -1.0130 33 1 5.1120 2.7807 0.3282 34 1 3.5731 3.3331 1.0322 35 1 3.5994 -0.3816 1.1473 36 1 5.0334 0.6585 1.3208 37 1 5.0556 0.6740 3.7537 38 1 3.5583 0.9529 4.6753 39 1 3.7481 -0.5331 3.7145 40 1 1.6690 0.1254 2.6174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106906745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:14 Heat of formation + Delta-G solvation = -44.229771 kcal Electronic energy + Delta-G solvation = -19288.458169 eV Core-core repulsion = 16524.007485 eV Total energy + Delta-G solvation = -2764.450683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79705 -38.04922 -35.91104 -34.81074 -33.16804 -31.79746 -30.17435 -28.60832 -26.15209 -25.24710 -24.17327 -22.71681 -22.01555 -20.17809 -18.73761 -17.54508 -17.11895 -16.62433 -16.23199 -15.87872 -15.73539 -15.28263 -14.88660 -14.80002 -14.38312 -13.82045 -13.52094 -13.31686 -13.12508 -12.92511 -12.78886 -12.66237 -12.42205 -12.31525 -12.26296 -12.00154 -11.93483 -11.86575 -11.51148 -11.30185 -11.23580 -10.91920 -10.58801 -8.96583 -8.60831 -7.87144 -5.32729 1.44204 1.45307 1.55263 2.49385 3.08380 3.27382 3.50184 3.68676 3.89338 4.13738 4.20277 4.24622 4.32472 4.41534 4.57676 4.62011 4.64268 4.71536 4.78406 4.88294 4.91125 4.92553 4.97494 5.10284 5.18916 5.23290 5.25152 5.32209 5.39668 5.49554 5.57076 5.64596 5.71180 6.29622 6.38331 6.42400 6.91039 7.13025 7.84313 8.38203 9.18965 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.007386 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.458847 B = 3789.863868 C = 4125.344483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C 0.080 3.920 4 H 0.053 0.947 5 C 0.151 3.849 6 N -0.615 5.615 7 C -0.262 4.262 8 H 0.064 0.936 9 C -0.053 4.053 10 N -0.937 5.937 11 Si 0.970 3.030 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.269 1.269 15 C 0.184 3.816 16 C 0.050 3.950 17 N -0.537 5.537 18 C 0.023 3.977 19 C 0.067 3.933 20 H 0.068 0.932 21 C -0.171 4.171 22 O -0.569 6.569 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.003 0.997 30 H 0.250 0.750 31 H -0.006 1.006 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.016 0.984 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 -13.345 11.853 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.029 4.029 4 H 0.071 0.929 5 C 0.025 3.975 6 N -0.338 5.338 7 C -0.392 4.392 8 H 0.081 0.919 9 C -0.248 4.248 10 N -0.584 5.584 11 Si 0.798 3.202 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.193 1.193 15 C 0.058 3.942 16 C -0.080 4.080 17 N -0.260 5.260 18 C -0.105 4.105 19 C 0.006 3.994 20 H 0.086 0.914 21 C -0.229 4.229 22 O -0.377 6.377 23 H 0.094 0.906 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.013 0.987 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.034 0.966 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.310 -12.792 11.276 17.055 hybrid contribution -0.415 1.122 0.223 1.217 sum -0.105 -11.670 11.499 16.384 Atomic orbital electron populations 1.21719 0.95044 1.02185 1.01279 1.21543 0.96128 0.94103 1.02026 1.22084 0.86967 0.97041 0.96844 0.92881 1.21141 0.95676 0.85444 0.95234 1.44383 1.04861 1.02314 1.82267 1.19556 0.93725 0.92365 1.33573 0.91851 1.25798 0.98453 1.02542 0.98036 1.70181 1.17919 1.29325 1.40997 0.85202 0.78489 0.79757 0.76735 1.21256 1.21800 1.19347 1.20656 0.83542 0.98019 0.91975 1.22558 0.98778 0.89131 0.97500 1.62115 1.10985 1.12122 1.40800 1.23079 1.01020 0.98620 0.87807 1.22579 0.81151 1.00024 0.95611 0.91393 1.22360 1.01892 1.01521 0.97125 1.86710 1.21965 1.32483 1.96556 0.90626 0.92918 0.94208 0.92763 0.89874 0.93166 0.97906 0.94055 0.98748 0.92296 0.90355 0.96560 0.88387 0.89514 0.90841 0.92353 0.90371 0.76915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.51 71.98 0.68 -2.81 16 2 C -0.10 -2.64 4.46 30.59 0.14 -2.51 16 3 C 0.08 2.88 1.36 44.85 0.06 2.94 16 4 H 0.05 2.14 5.83 -2.38 -0.01 2.13 16 5 C 0.15 6.90 5.53 86.20 0.48 7.38 16 6 N -0.61 -33.56 3.05 -699.01 -2.13 -35.69 16 7 C -0.26 -15.38 9.65 84.03 0.81 -14.57 16 8 H 0.06 3.65 7.87 -2.91 -0.02 3.63 16 9 C -0.05 -3.13 5.00 84.86 0.42 -2.71 16 10 N -0.94 -57.72 10.99 21.65 0.24 -57.48 16 11 Si 0.97 46.74 29.58 68.60 2.03 48.77 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 15 C 0.18 9.63 5.42 86.35 0.47 10.10 16 16 C 0.05 2.03 5.12 86.38 0.44 2.47 16 17 N -0.54 -18.88 4.68 -870.93 -4.07 -22.95 16 18 C 0.02 0.56 4.80 86.30 0.41 0.98 16 19 C 0.07 1.58 3.30 30.59 0.10 1.68 16 20 H 0.07 2.04 6.29 -2.39 -0.02 2.02 16 21 C -0.17 -2.77 9.47 71.98 0.68 -2.09 16 22 O -0.57 -14.25 9.47 -148.98 -1.41 -15.66 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.09 7.03 -2.39 -0.02 1.07 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.69 4.19 -2.39 -0.01 1.68 16 28 H 0.05 2.27 6.85 -2.39 -0.02 2.25 16 29 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 32 H 0.06 3.43 6.02 -2.38 -0.01 3.41 16 33 H 0.08 2.82 8.07 -2.38 -0.02 2.80 16 34 H 0.02 0.70 6.61 -2.39 -0.02 0.68 16 35 H 0.10 2.00 6.08 -2.39 -0.01 1.99 16 36 H 0.09 1.95 8.07 -2.39 -0.02 1.93 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.38 6.47 7.47 -74.06 -0.55 5.92 16 Total: -1.00 -69.24 296.54 -0.18 -69.42 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.46 Total: 12.72 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 4.70 Total: 0.87 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -5.97 Total: -116.13 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -1.41 Total: -15.66 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -69.24 -0.18 -69.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106906745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.193 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds