Wall clock time and date at job start Sun Mar 29 2020 22:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99858 * 2 1 4 4 C 1.53005 * 109.47185 * 184.00059 * 3 2 1 5 5 N 1.46899 * 109.46804 * 68.03960 * 4 3 2 6 6 C 1.46892 * 111.00307 * 293.93575 * 5 4 3 7 7 H 1.09001 * 109.49632 * 67.29525 * 6 5 4 8 8 C 1.53000 * 109.49582 * 307.21681 * 6 5 4 9 9 C 1.53240 * 109.34364 * 187.25597 * 6 5 4 10 10 N 1.47076 * 108.51717 * 306.17033 * 9 6 5 11 11 C 1.36940 * 120.88004 * 231.20117 * 10 9 6 12 12 H 1.08004 * 120.00184 * 27.30103 * 11 10 9 13 13 C 1.38815 * 120.00235 * 207.29310 * 11 10 9 14 14 N 1.31621 * 119.99501 * 18.81967 * 13 11 10 15 15 Si 1.86801 * 120.00109 * 198.81957 * 13 11 10 16 16 H 1.48500 * 109.47097 * 94.98893 * 15 13 11 17 17 H 1.48500 * 109.46776 * 214.98676 * 15 13 11 18 18 H 1.48500 * 109.47060 * 334.98336 * 15 13 11 19 19 C 1.47080 * 118.23866 * 51.18525 * 10 9 6 20 20 C 1.46903 * 111.00014 * 58.24112 * 5 4 3 21 21 H 1.08997 * 109.48883 * 292.70238 * 20 5 4 22 22 C 1.52995 * 109.49362 * 52.78528 * 20 5 4 23 23 H 1.09003 * 109.46945 * 299.99529 * 1 2 3 24 24 H 1.09003 * 109.47075 * 59.99566 * 1 2 3 25 25 H 1.08996 * 109.46856 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47315 * 64.00529 * 3 2 1 27 27 H 1.08996 * 109.47724 * 303.99994 * 3 2 1 28 28 H 1.08992 * 109.47011 * 308.03993 * 4 3 2 29 29 H 1.09000 * 109.47106 * 188.04170 * 4 3 2 30 30 H 1.09001 * 109.47040 * 66.60682 * 8 6 5 31 31 H 1.08999 * 109.47502 * 186.61324 * 8 6 5 32 32 H 1.09004 * 109.47098 * 306.61154 * 8 6 5 33 33 H 1.09000 * 109.62977 * 65.88180 * 9 6 5 34 34 H 1.08996 * 109.62988 * 186.26596 * 9 6 5 35 35 H 0.97003 * 119.99703 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.62718 * 68.52503 * 19 10 9 37 37 H 1.09004 * 109.62671 * 188.90720 * 19 10 9 38 38 H 1.08995 * 109.47297 * 53.13205 * 22 20 5 39 39 H 1.08999 * 109.47139 * 173.13230 * 22 20 5 40 40 H 1.09001 * 109.47392 * 293.13102 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5323 1.1861 -0.1006 5 7 3.8962 0.6682 -1.4263 6 6 3.4255 -0.7125 -1.5995 7 1 2.3360 -0.7245 -1.6281 8 6 3.9156 -1.5694 -0.4305 9 6 3.9777 -1.2759 -2.9132 10 7 3.6199 -0.3555 -4.0032 11 6 3.0073 -0.8150 -5.1385 12 1 2.3954 -1.7041 -5.0999 13 6 3.1727 -0.1380 -6.3390 14 7 4.1776 0.6987 -6.4896 15 14 1.9692 -0.4143 -7.7406 16 1 0.9169 0.6328 -7.7032 17 1 2.6927 -0.3429 -9.0355 18 1 1.3415 -1.7525 -7.5975 19 6 3.9371 1.0715 -3.8414 20 6 3.3865 1.5425 -2.4911 21 1 2.2975 1.4991 -2.5072 22 6 3.8369 2.9811 -2.2299 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7465 1.8206 0.9237 27 1 1.6331 1.8712 -0.8519 28 1 3.8948 0.5038 0.6681 29 1 3.9839 2.1677 0.0425 30 1 3.4322 -1.2398 0.4892 31 1 3.6677 -2.6143 -0.6170 32 1 4.9960 -1.4645 -0.3310 33 1 5.0624 -1.3617 -2.8476 34 1 3.5435 -2.2577 -3.1018 35 1 4.2934 1.1715 -7.3286 36 1 5.0178 1.2113 -3.8650 37 1 3.4763 1.6427 -4.6473 38 1 4.9181 3.0043 -2.0938 39 1 3.5642 3.6072 -3.0794 40 1 3.3493 3.3569 -1.3303 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129385105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:22 Heat of formation + Delta-G solvation = -10.198537 kcal Electronic energy + Delta-G solvation = -19420.148688 eV Core-core repulsion = 16657.173710 eV Total energy + Delta-G solvation = -2762.974978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.31426 -37.08035 -34.46175 -32.91100 -31.36309 -29.46670 -27.50778 -26.28556 -25.60483 -25.24068 -22.95666 -20.80253 -20.39852 -18.53623 -16.68487 -16.37772 -16.12185 -15.15670 -14.86748 -14.66505 -14.20160 -13.80311 -13.31115 -12.90154 -12.62280 -12.36260 -12.22746 -11.94669 -11.62112 -11.54976 -11.19203 -11.10184 -10.97280 -10.88392 -10.78126 -10.57407 -10.33864 -10.08083 -9.95578 -9.62144 -9.46909 -9.18825 -8.42446 -7.54389 -6.55750 -5.72053 -3.11741 3.40542 3.47699 3.49411 3.91657 4.52638 4.58311 5.22443 5.27913 5.38891 5.44942 5.45677 5.51101 5.54189 5.69512 5.74673 5.75245 5.83446 6.02750 6.07006 6.07714 6.22513 6.25592 6.39414 6.50773 6.59633 6.63970 6.70685 6.80797 6.92505 7.13965 7.28730 7.39246 7.72339 7.80843 7.88287 7.97243 8.50716 9.28228 9.92561 10.52542 11.36594 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.007926 C = 0.007583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.573885 B = 3531.699292 C = 3691.406950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.022 3.978 4 C 0.048 3.952 5 N -0.519 5.519 6 C 0.066 3.934 7 H 0.062 0.938 8 C -0.136 4.136 9 C 0.153 3.847 10 N -0.595 5.595 11 C -0.249 4.249 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.289 1.289 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.187 3.813 20 C 0.056 3.944 21 H 0.033 0.967 22 C -0.142 4.142 23 H 0.034 0.966 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.021 0.979 34 H 0.051 0.949 35 H 0.252 0.748 36 H 0.025 0.975 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 2.074 13.260 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C -0.056 4.056 4 C -0.080 4.080 5 N -0.243 5.243 6 C -0.043 4.043 7 H 0.079 0.921 8 C -0.194 4.194 9 C 0.026 3.974 10 N -0.318 5.318 11 C -0.379 4.379 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.546 5.546 15 Si 0.729 3.271 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.061 3.939 20 C -0.054 4.054 21 H 0.051 0.949 22 C -0.200 4.200 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.368 1.959 13.029 13.599 hybrid contribution -1.770 0.259 -0.698 1.921 sum -5.138 2.218 12.331 13.541 Atomic orbital electron populations 1.22693 0.82184 1.02407 0.99433 1.88049 1.18857 1.27508 1.94965 1.23408 0.97189 0.85320 0.99730 1.22429 0.90351 1.01275 0.93983 1.62211 1.59108 1.02551 1.00464 1.22273 0.98810 0.87302 0.95898 0.92067 1.21792 1.00643 0.98852 0.98138 1.21061 0.96652 0.92896 0.86750 1.44116 1.69557 1.02108 1.15973 1.19203 1.21651 1.11179 0.85846 0.91779 1.25006 0.97181 1.00659 0.96902 1.70067 1.27905 1.31467 1.25152 0.86318 0.80933 0.77875 0.81977 1.21648 1.21810 1.20429 1.20815 0.97288 0.84948 0.90835 1.22452 0.96836 0.91481 0.94605 0.94946 1.21841 1.01774 0.96087 1.00276 0.94775 0.94263 0.89926 0.94112 0.92912 0.90139 0.89776 0.92677 0.93143 0.93012 0.96130 0.93059 0.93757 0.95691 0.90007 0.92021 0.92409 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.67 6.52 -35.23 -0.23 -5.90 16 3 C 0.02 0.31 5.54 37.16 0.21 0.51 16 4 C 0.05 0.71 5.02 -3.82 -0.02 0.69 16 5 N -0.52 -9.54 4.52 -218.44 -0.99 -10.52 16 6 C 0.07 1.27 1.92 -67.59 -0.13 1.14 16 7 H 0.06 1.27 5.82 -51.93 -0.30 0.97 16 8 C -0.14 -2.18 8.26 37.16 0.31 -1.87 16 9 C 0.15 3.47 5.97 -3.60 -0.02 3.45 16 10 N -0.60 -15.65 3.03 -172.01 -0.52 -16.17 16 11 C -0.25 -7.07 9.61 -15.06 -0.14 -7.21 16 12 H 0.06 1.80 7.90 -52.48 -0.41 1.38 16 13 C 0.00 0.03 4.88 -17.43 -0.09 -0.06 16 14 N -0.90 -26.71 11.32 55.49 0.63 -26.08 16 15 Si 0.90 22.11 29.59 -169.99 -5.03 17.08 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.19 4.64 4.71 -3.60 -0.02 4.62 16 20 C 0.06 1.11 1.97 -67.59 -0.13 0.97 16 21 H 0.03 0.69 6.52 -51.93 -0.34 0.35 16 22 C -0.14 -2.32 8.41 37.16 0.31 -2.00 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.80 5.85 -51.93 -0.30 0.50 16 28 H 0.08 1.14 5.99 -51.93 -0.31 0.83 16 29 H 0.08 1.11 6.47 -51.93 -0.34 0.78 16 30 H 0.05 0.83 5.65 -51.93 -0.29 0.53 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 1.14 7.96 -51.93 -0.41 0.73 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 2.23 6.23 -51.93 -0.32 1.91 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.58 6.40 -51.93 -0.33 0.24 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -30.42 298.12 -6.99 -37.41 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.73 Total: -2.03 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 1.39 Total: 1.73 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.88 Total: -52.78 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.23 Total: -5.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.42 -6.99 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129385105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.210 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds