Wall clock time and date at job start Sun Mar 29 2020 22:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29364 * 1 3 3 Si 1.86794 * 120.00428 * 2 1 4 4 H 1.48501 * 109.47495 * 270.00449 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00122 * 3 2 1 6 6 H 1.48498 * 109.47481 * 150.00170 * 3 2 1 7 7 C 1.46638 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 179.97438 * 7 2 1 9 9 O 1.22309 * 119.99854 * 0.27507 * 7 2 1 10 10 C 1.35722 * 116.99815 * 179.72229 * 9 7 2 11 11 C 1.39055 * 120.07708 * 90.00245 * 10 9 7 12 12 Cl 1.73600 * 120.04722 * 0.02562 * 11 10 9 13 13 C 1.38179 * 119.90204 * 180.02562 * 11 10 9 14 14 C 1.38306 * 120.06093 * 0.02562 * 13 11 10 15 15 C 1.38300 * 120.15612 * 359.97438 * 14 13 11 16 16 C 1.38121 * 120.09552 * 359.71829 * 15 14 13 17 17 N 1.48014 * 120.03006 * 180.29616 * 16 15 14 18 18 O 1.31706 * 120.00106 * 0.28667 * 17 16 15 19 19 O 1.31703 * 120.00175 * 180.27666 * 17 16 15 20 20 H 0.97005 * 119.99687 * 359.97438 * 1 2 3 21 21 H 1.07999 * 119.96841 * 180.02562 * 13 11 10 22 22 H 1.08003 * 119.92567 * 179.97438 * 14 13 11 23 23 H 1.08002 * 119.95445 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2277 1.6176 0.0000 4 1 2.4752 2.0464 -1.4001 5 1 1.4252 2.6526 0.7001 6 1 3.5253 1.4400 0.7000 7 6 2.0268 -1.2699 -0.0006 8 1 3.1068 -1.2699 -0.0010 9 8 1.4152 -2.3291 -0.0061 10 6 2.1543 -3.4674 -0.0122 11 6 2.5339 -4.0582 1.1880 12 17 2.0624 -3.3413 2.6972 13 6 3.2869 -5.2168 1.1777 14 6 3.6631 -5.7878 -0.0245 15 6 3.2870 -5.2023 -1.2196 16 6 2.5289 -4.0477 -1.2168 17 7 2.1216 -3.4258 -2.4968 18 8 2.4773 -3.9766 -3.6391 19 8 1.4034 -2.3219 -2.4935 20 1 -0.4850 0.8401 0.0004 21 1 3.5819 -5.6768 2.1092 22 1 4.2520 -6.6931 -0.0300 23 1 3.5829 -5.6507 -2.1565 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130401133.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:55 Heat of formation + Delta-G solvation = 19.539696 kcal Electronic energy + Delta-G solvation = -15292.605001 eV Core-core repulsion = 12330.577693 eV Total energy + Delta-G solvation = -2962.027307 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 243.013 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.18479 -39.32261 -37.58365 -36.96898 -36.50868 -32.78632 -31.56651 -31.25239 -28.95830 -26.05877 -24.05882 -22.65141 -22.32850 -20.27248 -18.35124 -18.09012 -17.84007 -17.37262 -16.54288 -15.62776 -15.34880 -14.87446 -14.86813 -14.62253 -14.12213 -13.80606 -13.52162 -12.92006 -12.22678 -12.19396 -12.16135 -12.00063 -11.79875 -10.73175 -10.20507 -10.08588 -9.91471 -9.78121 -9.66601 -6.16861 -1.40335 0.13729 0.62741 0.80120 0.98714 1.00788 1.32805 1.59183 1.70334 1.95548 2.44333 2.66870 2.83121 3.36165 4.01580 4.29137 4.50818 4.65725 4.77130 5.02366 5.34991 5.54272 5.74125 5.89270 6.19311 6.28307 7.51665 8.47982 Molecular weight = 243.01amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.012110 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.283453 B = 2311.645944 C = 3339.754737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.084 4.084 3 Si 1.041 2.959 4 H -0.258 1.258 5 H -0.194 1.194 6 H -0.191 1.191 7 C 0.317 3.683 8 H 0.196 0.804 9 O -0.027 6.027 10 C -0.238 4.238 11 C 0.066 3.934 12 Cl -0.057 7.057 13 C -0.223 4.223 14 C -0.048 4.048 15 C -0.178 4.178 16 C 0.061 3.939 17 N -0.096 5.096 18 O -0.685 6.685 19 O -0.649 6.649 20 H 0.380 0.620 21 H 0.165 0.835 22 H 0.161 0.839 23 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 11.793 20.358 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.319 4.319 3 Si 0.844 3.156 4 H -0.182 1.182 5 H -0.115 1.115 6 H -0.111 1.111 7 C 0.205 3.795 8 H 0.212 0.788 9 O 0.110 5.890 10 C -0.287 4.287 11 C 0.039 3.961 12 Cl -0.028 7.028 13 C -0.245 4.245 14 C -0.070 4.070 15 C -0.200 4.200 16 C -0.073 4.073 17 N 0.193 4.807 18 O -0.751 6.751 19 O -0.716 6.716 20 H 0.202 0.798 21 H 0.183 0.817 22 H 0.178 0.822 23 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.854 11.832 19.850 23.284 hybrid contribution -0.524 0.132 -1.514 1.608 sum 2.330 11.964 18.335 22.017 Atomic orbital electron populations 1.68696 1.10825 1.41067 0.97026 1.31394 0.98866 1.02862 0.98817 0.84548 0.81275 0.67117 0.82692 1.18201 1.11452 1.11126 1.29390 1.02070 0.87769 0.60306 0.78767 1.81368 1.41551 1.15115 1.50996 1.17272 1.27190 0.91949 0.92332 1.20264 0.97841 0.95963 0.82034 1.98312 1.91139 1.83226 1.30099 1.20391 1.07718 0.97187 0.99192 1.20911 0.97732 0.98968 0.89382 1.20177 1.04578 0.96122 0.99120 1.19383 1.08014 0.98968 0.80923 1.47330 1.23732 1.10030 0.99579 1.95598 1.83356 1.75703 1.20411 1.95449 1.58552 1.21419 1.96178 0.79834 0.81740 0.82197 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -14.86 13.66 23.22 0.32 -14.54 14 2 C -0.08 -2.09 5.69 87.25 0.50 -1.59 14 3 Si 1.04 12.58 29.64 68.60 2.03 14.62 14 4 H -0.26 -4.54 7.11 99.48 0.71 -3.84 14 5 H -0.19 -1.22 7.11 99.48 0.71 -0.52 14 6 H -0.19 -1.45 7.11 99.48 0.71 -0.75 14 7 C 0.32 10.69 8.27 70.01 0.58 11.27 14 8 H 0.20 5.06 7.73 -2.91 -0.02 5.03 14 9 O -0.03 -1.19 7.24 73.36 0.53 -0.66 14 10 C -0.24 -11.53 5.36 22.62 0.12 -11.41 14 11 C 0.07 2.50 6.34 22.45 0.14 2.64 14 12 Cl -0.06 -1.59 28.42 -2.72 -0.08 -1.66 14 13 C -0.22 -7.64 9.82 22.27 0.22 -7.42 14 14 C -0.05 -1.87 10.04 22.30 0.22 -1.64 14 15 C -0.18 -9.68 9.57 22.26 0.21 -9.47 14 16 C 0.06 3.76 6.90 36.50 0.25 4.01 14 17 N -0.10 -7.51 4.98 -46.17 -0.23 -7.74 14 18 O -0.69 -60.27 19.15 3.50 0.07 -60.20 14 19 O -0.65 -50.53 16.94 10.82 0.18 -50.35 14 20 H 0.38 6.65 8.26 -92.70 -0.77 5.88 14 21 H 0.17 4.17 8.06 -2.91 -0.02 4.15 14 22 H 0.16 4.74 8.06 -2.91 -0.02 4.72 14 23 H 0.09 5.34 7.58 -2.91 -0.02 5.32 14 Total: -1.00 -120.49 243.04 6.34 -114.15 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 1.26 Total: 20.00 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 2.25 Total: -13.62 kcal Atomic # 7 Polarization: -22.37 SS G_CDS: 0.09 Total: -22.28 kcal Atomic # 8 Polarization: -111.99 SS G_CDS: 0.78 Total: -111.21 kcal Atomic # 14 Polarization: 12.58 SS G_CDS: 2.03 Total: 14.62 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.66 kcal Total: -120.49 6.34 -114.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130401133.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.693 kcal (2) G-P(sol) polarization free energy of solvation -120.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds