Wall clock time and date at job start Sun Mar 29 2020 22:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47138 * 274.99702 * 3 2 1 5 5 H 1.48506 * 109.47173 * 34.99775 * 3 2 1 6 6 H 1.48499 * 109.47300 * 154.99783 * 3 2 1 7 7 C 1.40124 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99864 * 174.96694 * 7 2 1 9 9 C 1.46165 * 120.00016 * 354.96922 * 7 2 1 10 10 O 1.21738 * 119.99797 * 5.03128 * 9 7 2 11 11 N 1.34769 * 119.99851 * 185.02796 * 9 7 2 12 12 C 1.39521 * 120.00001 * 184.60126 * 11 9 7 13 13 C 1.39015 * 120.06371 * 324.86313 * 12 11 9 14 14 C 1.38268 * 119.91644 * 180.02562 * 13 12 11 15 15 F 1.35098 * 119.97312 * 180.02562 * 14 13 12 16 16 C 1.38562 * 120.04624 * 359.97438 * 14 13 12 17 17 C 1.38387 * 120.13048 * 0.02562 * 16 14 13 18 18 Cl 1.73603 * 119.96254 * 179.97438 * 17 16 14 19 19 C 1.38209 * 120.08126 * 0.02562 * 17 16 14 20 20 H 0.97004 * 119.99751 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00242 * 4.59963 * 11 9 7 22 22 H 1.07998 * 120.04020 * 0.02562 * 13 12 11 23 23 H 1.08000 * 119.93310 * 180.28306 * 16 14 13 24 24 H 1.07995 * 120.02391 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3823 2.1074 -1.3948 5 1 1.4946 2.6199 0.8030 6 1 3.5868 1.4120 0.5917 7 6 2.0069 -1.2135 0.0005 8 1 3.0838 -1.2154 -0.0815 9 6 1.2803 -2.4769 0.1121 10 8 0.0629 -2.4808 0.1123 11 7 1.9580 -3.6372 0.2147 12 6 1.2678 -4.8497 0.2245 13 6 0.0228 -4.9375 0.8368 14 6 -0.6583 -6.1407 0.8452 15 9 -1.8684 -6.2271 1.4395 16 6 -0.1010 -7.2576 0.2435 17 6 1.1382 -7.1724 -0.3666 18 17 1.8326 -8.5746 -1.1185 19 6 1.8242 -5.9726 -0.3772 20 1 -0.4850 0.8401 -0.0004 21 1 2.9257 -3.6295 0.2818 22 1 -0.4117 -4.0669 1.3054 23 1 -0.6366 -8.1954 0.2471 24 1 2.7913 -5.9073 -0.8532 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230015903.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:29 Heat of formation + Delta-G solvation = -70.349586 kcal Electronic energy + Delta-G solvation = -14548.302835 eV Core-core repulsion = 11594.750425 eV Total energy + Delta-G solvation = -2953.552410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 243.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.55020 -39.36148 -37.29078 -36.13734 -33.54968 -32.58826 -30.03749 -29.25132 -26.41739 -22.79065 -22.28055 -20.13518 -17.96857 -17.23804 -16.11516 -15.90049 -15.49448 -15.23677 -14.94144 -14.42418 -13.97924 -13.23237 -13.00910 -12.73248 -12.59499 -11.75132 -11.48500 -11.27306 -11.26658 -10.98497 -10.94122 -10.73594 -10.42290 -9.45484 -9.01936 -8.41768 -7.88735 -7.47254 -6.46959 -4.94648 1.41013 1.50284 2.17042 3.00870 3.08916 3.12649 3.79095 3.90107 4.29806 4.34785 4.67713 5.24452 5.31259 5.47407 5.59517 5.71100 6.01555 6.31358 6.46141 6.71991 7.04719 7.18845 7.52761 7.78854 7.99920 8.73239 9.01561 10.21546 10.43207 Molecular weight = 243.02amu Principal moments of inertia in cm(-1) A = 0.037141 B = 0.005856 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.699854 B = 4780.227307 C = 5431.363388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.539 3.461 10 O -0.557 6.557 11 N -0.693 5.693 12 C 0.231 3.769 13 C -0.162 4.162 14 C 0.129 3.871 15 F -0.137 7.137 16 C -0.194 4.194 17 C 0.015 3.985 18 Cl -0.074 7.074 19 C -0.177 4.177 20 H 0.274 0.726 21 H 0.399 0.601 22 H 0.162 0.838 23 H 0.136 0.864 24 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 -9.867 0.286 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.347 3.653 10 O -0.439 6.439 11 N -0.336 5.336 12 C 0.130 3.870 13 C -0.184 4.184 14 C 0.109 3.891 15 F -0.116 7.116 16 C -0.215 4.215 17 C -0.013 4.013 18 Cl -0.046 7.046 19 C -0.199 4.199 20 H 0.085 0.915 21 H 0.233 0.767 22 H 0.179 0.821 23 H 0.154 0.846 24 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.158 -9.737 0.223 10.239 hybrid contribution 0.741 0.603 -0.040 0.956 sum 3.899 -9.133 0.183 9.932 Atomic orbital electron populations 1.69979 1.07240 1.28091 1.33031 1.25770 0.94742 1.00682 0.92456 0.86222 0.80213 0.80728 0.78924 1.19583 1.20143 1.18621 1.20833 0.94253 0.88818 1.53150 0.90709 1.18485 0.87506 0.81959 0.77348 1.90638 1.13664 1.85295 1.54285 1.44251 1.10055 1.03825 1.75500 1.17456 0.91952 0.86413 0.91142 1.21590 0.96603 0.97544 1.02643 1.17269 0.81681 0.93938 0.96244 1.91482 1.41721 1.96884 1.81508 1.20636 0.96565 0.99074 1.05259 1.20092 0.94054 0.88019 0.99104 1.98344 1.84309 1.41005 1.80900 1.20804 1.02848 0.91412 1.04877 0.91523 0.76685 0.82100 0.84621 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.23 11.84 55.55 0.66 -20.58 14 2 C 0.09 2.22 5.50 -17.35 -0.10 2.12 14 3 Si 0.92 18.76 29.56 -169.99 -5.03 13.74 14 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 14 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 14 7 C -0.53 -13.91 9.53 -35.69 -0.34 -14.25 14 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 14 9 C 0.54 14.19 7.58 -13.08 -0.10 14.09 14 10 O -0.56 -16.63 12.46 5.15 0.06 -16.57 14 11 N -0.69 -14.48 5.31 -11.21 -0.06 -14.54 14 12 C 0.23 4.53 6.29 -83.78 -0.53 4.00 14 13 C -0.16 -3.34 8.67 -39.28 -0.34 -3.68 14 14 C 0.13 2.34 7.30 -39.45 -0.29 2.05 14 15 F -0.14 -2.48 17.27 2.25 0.04 -2.45 14 16 C -0.19 -3.05 9.81 -39.41 -0.39 -3.44 14 17 C 0.01 0.22 6.32 -39.54 -0.25 -0.03 14 18 Cl -0.07 -0.96 28.95 -51.86 -1.50 -2.46 14 19 C -0.18 -2.88 9.75 -39.31 -0.38 -3.27 14 20 H 0.27 6.96 8.29 -40.82 -0.34 6.62 14 21 H 0.40 6.93 8.80 -40.82 -0.36 6.58 14 22 H 0.16 3.82 6.22 -52.49 -0.33 3.49 14 23 H 0.14 1.81 8.06 -52.49 -0.42 1.39 14 24 H 0.14 1.90 8.06 -52.49 -0.42 1.48 14 LS Contribution 244.73 15.07 3.69 3.69 Total: -1.00 -29.76 244.73 -5.92 -35.69 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -1.08 Total: 5.88 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.71 Total: -2.40 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.60 Total: -35.12 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.06 Total: -16.57 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.76 -5.92 -35.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230015903.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.664 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds