Wall clock time and date at job start Sun Mar 29 2020 22:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47138 * 274.99702 * 3 2 1 5 5 H 1.48506 * 109.47173 * 34.99775 * 3 2 1 6 6 H 1.48499 * 109.47300 * 154.99783 * 3 2 1 7 7 C 1.40124 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99864 * 174.96694 * 7 2 1 9 9 C 1.46165 * 120.00016 * 354.96922 * 7 2 1 10 10 O 1.21738 * 119.99797 * 5.03128 * 9 7 2 11 11 N 1.34769 * 119.99851 * 185.02796 * 9 7 2 12 12 C 1.39521 * 120.00001 * 184.60126 * 11 9 7 13 13 C 1.39015 * 120.06371 * 324.86313 * 12 11 9 14 14 C 1.38268 * 119.91644 * 180.02562 * 13 12 11 15 15 F 1.35098 * 119.97312 * 180.02562 * 14 13 12 16 16 C 1.38562 * 120.04624 * 359.97438 * 14 13 12 17 17 C 1.38387 * 120.13048 * 0.02562 * 16 14 13 18 18 Cl 1.73603 * 119.96254 * 179.97438 * 17 16 14 19 19 C 1.38209 * 120.08126 * 0.02562 * 17 16 14 20 20 H 0.97004 * 119.99751 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00242 * 4.59963 * 11 9 7 22 22 H 1.07998 * 120.04020 * 0.02562 * 13 12 11 23 23 H 1.08000 * 119.93310 * 180.28306 * 16 14 13 24 24 H 1.07995 * 120.02391 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3823 2.1074 -1.3948 5 1 1.4946 2.6199 0.8030 6 1 3.5868 1.4120 0.5917 7 6 2.0069 -1.2135 0.0005 8 1 3.0838 -1.2154 -0.0815 9 6 1.2803 -2.4769 0.1121 10 8 0.0629 -2.4808 0.1123 11 7 1.9580 -3.6372 0.2147 12 6 1.2678 -4.8497 0.2245 13 6 0.0228 -4.9375 0.8368 14 6 -0.6583 -6.1407 0.8452 15 9 -1.8684 -6.2271 1.4395 16 6 -0.1010 -7.2576 0.2435 17 6 1.1382 -7.1724 -0.3666 18 17 1.8326 -8.5746 -1.1185 19 6 1.8242 -5.9726 -0.3772 20 1 -0.4850 0.8401 -0.0004 21 1 2.9257 -3.6295 0.2818 22 1 -0.4117 -4.0669 1.3054 23 1 -0.6366 -8.1954 0.2471 24 1 2.7913 -5.9073 -0.8532 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230015903.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:29 Heat of formation + Delta-G solvation = -89.615458 kcal Electronic energy + Delta-G solvation = -14549.138266 eV Core-core repulsion = 11594.750425 eV Total energy + Delta-G solvation = -2954.387841 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 243.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.00052 -40.94504 -38.93516 -37.44005 -35.29995 -34.56255 -31.46299 -30.82833 -28.31745 -24.35160 -23.74012 -21.89688 -19.70797 -18.82806 -17.82438 -17.29111 -17.18505 -16.71011 -16.50458 -16.00781 -15.58686 -14.82496 -14.60500 -14.37055 -14.12672 -13.26048 -13.14841 -12.90693 -12.78110 -12.66831 -12.39178 -12.08286 -12.02055 -11.07894 -10.88105 -10.02744 -9.69115 -9.07862 -8.40511 -6.97907 -0.00262 0.08508 0.92494 1.40607 1.41922 1.58717 2.19052 2.23794 2.52998 2.74822 3.22813 3.52190 3.95791 3.98151 4.12636 4.22567 4.63321 4.95644 5.04600 5.21164 5.25545 5.53309 5.73118 6.09893 6.14981 6.75414 7.23943 8.27538 8.52867 Molecular weight = 243.02amu Principal moments of inertia in cm(-1) A = 0.037141 B = 0.005856 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.699854 B = 4780.227307 C = 5431.363388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.029 3.971 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.560 4.560 8 H 0.098 0.902 9 C 0.527 3.473 10 O -0.605 6.605 11 N -0.685 5.685 12 C 0.207 3.793 13 C -0.188 4.188 14 C 0.121 3.879 15 F -0.141 7.141 16 C -0.174 4.174 17 C 0.018 3.982 18 Cl -0.040 7.040 19 C -0.158 4.158 20 H 0.278 0.722 21 H 0.415 0.585 22 H 0.119 0.881 23 H 0.167 0.833 24 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 -11.089 -0.458 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.595 4.595 8 H 0.116 0.884 9 C 0.335 3.665 10 O -0.490 6.490 11 N -0.330 5.330 12 C 0.107 3.893 13 C -0.211 4.211 14 C 0.101 3.899 15 F -0.119 7.119 16 C -0.194 4.194 17 C -0.010 4.010 18 Cl -0.011 7.011 19 C -0.180 4.180 20 H 0.088 0.912 21 H 0.252 0.748 22 H 0.137 0.863 23 H 0.185 0.815 24 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.240 -11.024 -0.518 12.216 hybrid contribution 0.105 0.757 0.169 0.783 sum 5.345 -10.266 -0.350 11.579 Atomic orbital electron populations 1.70144 1.09655 1.29523 1.34755 1.27033 0.95533 1.05132 0.91078 0.84930 0.78995 0.74736 0.79250 1.18713 1.19915 1.16796 1.21399 0.95539 0.89296 1.53290 0.88372 1.18811 0.87167 0.83676 0.76870 1.90608 1.15703 1.86517 1.56212 1.43722 1.10671 1.03253 1.75334 1.17588 0.92001 0.86910 0.92775 1.21362 0.97954 0.97374 1.04366 1.17314 0.81645 0.93976 0.96985 1.91468 1.41914 1.96870 1.81681 1.20918 0.96469 0.99050 1.02972 1.20185 0.93710 0.88837 0.98251 1.98366 1.83732 1.38867 1.80119 1.20980 1.03492 0.90342 1.03137 0.91152 0.74765 0.86348 0.81535 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.39 11.84 21.85 0.26 -47.14 14 2 C 0.03 1.52 5.50 85.33 0.47 1.99 14 3 Si 1.00 38.35 29.56 68.60 2.03 40.38 14 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 14 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 14 6 H -0.25 -8.60 7.11 99.48 0.71 -7.89 14 7 C -0.56 -29.48 9.53 24.79 0.24 -29.24 14 8 H 0.10 4.51 7.85 -2.91 -0.02 4.49 14 9 C 0.53 28.74 7.58 86.30 0.65 29.40 14 10 O -0.60 -38.25 12.46 -4.47 -0.06 -38.31 14 11 N -0.69 -29.03 5.31 -307.58 -1.63 -30.67 14 12 C 0.21 8.13 6.29 38.29 0.24 8.37 14 13 C -0.19 -8.12 8.67 22.46 0.19 -7.92 14 14 C 0.12 4.39 7.30 22.35 0.16 4.55 14 15 F -0.14 -5.15 17.27 44.97 0.78 -4.38 14 16 C -0.17 -5.02 9.81 22.38 0.22 -4.80 14 17 C 0.02 0.49 6.32 22.30 0.14 0.63 14 18 Cl -0.04 -0.87 28.95 -2.72 -0.08 -0.95 14 19 C -0.16 -4.78 9.75 22.45 0.22 -4.56 14 20 H 0.28 14.71 8.29 -92.71 -0.77 13.94 14 21 H 0.42 14.23 8.80 -92.70 -0.82 13.41 14 22 H 0.12 6.14 6.22 -2.91 -0.02 6.12 14 23 H 0.17 3.80 8.06 -2.91 -0.02 3.77 14 24 H 0.16 4.00 8.06 -2.91 -0.02 3.97 14 Total: -1.00 -67.60 244.73 4.28 -63.32 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.45 Total: 19.32 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 2.54 Total: -1.59 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.38 Total: -77.80 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.06 Total: -38.31 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.78 Total: -4.38 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -67.60 4.28 -63.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230015903.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.293 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds