Wall clock time and date at job start Sun Mar 29 2020 23:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37098 * 120.00295 * 2 1 4 4 H 1.08005 * 119.99496 * 204.39611 * 3 2 1 5 5 C 1.38939 * 119.99988 * 24.39242 * 3 2 1 6 6 N 1.31412 * 120.00148 * 12.64761 * 5 3 2 7 7 Si 1.86804 * 120.00199 * 192.64351 * 5 3 2 8 8 H 1.48501 * 109.46786 * 60.00343 * 7 5 3 9 9 H 1.48504 * 109.47316 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47269 * 300.00596 * 7 5 3 11 11 C 1.34780 * 119.99720 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00069 * 179.97438 * 11 2 1 13 13 C 1.50698 * 119.99852 * 359.97438 * 11 2 1 14 14 N 1.46501 * 109.46914 * 180.02562 * 13 11 2 15 15 C 1.35046 * 126.03565 * 124.99940 * 14 13 11 16 16 C 1.35379 * 107.72875 * 179.97438 * 15 14 13 17 17 Cl 1.73594 * 126.04572 * 179.97438 * 16 15 14 18 18 C 1.39926 * 107.90553 * 0.02562 * 16 15 14 19 19 N 1.30852 * 108.21760 * 359.75987 * 18 16 15 20 20 H 1.09005 * 109.47207 * 265.87041 * 1 2 3 21 21 H 1.09007 * 109.46897 * 25.86066 * 1 2 3 22 22 H 1.09001 * 109.47743 * 145.86663 * 1 2 3 23 23 H 0.97004 * 120.00451 * 180.02562 * 6 5 3 24 24 H 1.08994 * 109.47687 * 300.00069 * 13 11 2 25 25 H 1.08994 * 109.47337 * 60.00496 * 13 11 2 26 26 H 1.08003 * 126.13680 * 359.95104 * 15 14 13 27 27 H 1.07999 * 125.89409 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2289 -0.3864 5 6 1.5489 2.3368 0.4969 6 7 0.4347 2.2491 1.1882 7 14 2.3238 4.0072 0.1826 8 1 2.4041 4.2481 -1.2806 9 1 1.4934 5.0648 0.8130 10 1 3.6896 4.0367 0.7647 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 7 2.3372 -3.5859 -0.0005 15 6 2.3773 -4.5967 0.8940 16 6 3.3975 -5.4155 0.5454 17 17 3.8733 -6.8646 1.3743 18 6 4.0013 -4.8864 -0.6007 19 7 3.3635 -3.7927 -0.9312 20 1 -0.3634 -0.0740 1.0250 21 1 -0.3633 0.9248 -0.4483 22 1 -0.3634 -0.8506 -0.5766 23 1 0.0144 3.0517 1.5348 24 1 0.7589 -2.5303 0.8896 25 1 0.7583 -2.5299 -0.8903 26 1 1.7147 -4.7282 1.7367 27 1 4.8457 -5.3098 -1.1243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291532432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:47 Heat of formation + Delta-G solvation = 32.165279 kcal Electronic energy + Delta-G solvation = -15042.114913 eV Core-core repulsion = 12248.760938 eV Total energy + Delta-G solvation = -2793.353975 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.23537 -40.23233 -37.33390 -36.71068 -34.32638 -33.52309 -31.01952 -29.04855 -27.80921 -26.08256 -22.71206 -22.13519 -20.78862 -18.92769 -18.30621 -17.96879 -16.69770 -16.60387 -15.94392 -15.56329 -15.32625 -15.07676 -14.29798 -14.10279 -13.96093 -13.36411 -13.17754 -13.14223 -12.67557 -12.63944 -12.35638 -12.28782 -12.15785 -11.39508 -11.03058 -10.86047 -10.25229 -9.70102 -9.35859 -8.38301 -6.03009 0.77557 1.04288 1.36341 1.39906 1.49447 1.68186 1.84486 1.94142 2.25222 2.92824 3.04208 3.68793 3.82992 3.96658 4.09838 4.16841 4.54525 4.64454 4.67568 5.03028 5.37728 5.41466 5.42771 5.81102 6.07806 6.44576 6.62779 7.12970 7.39254 7.95368 8.63890 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.054797 B = 0.004993 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.852670 B = 5606.032400 C = 5786.715246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.457 5.457 3 C -0.345 4.345 4 H 0.065 0.935 5 C 0.004 3.996 6 N -0.890 5.890 7 Si 0.985 3.015 8 H -0.268 1.268 9 H -0.267 1.267 10 H -0.280 1.280 11 C 0.421 3.579 12 O -0.616 6.616 13 C 0.131 3.869 14 N -0.354 5.354 15 C 0.076 3.924 16 C -0.201 4.201 17 Cl -0.036 7.036 18 C 0.047 3.953 19 N -0.302 5.302 20 H 0.053 0.947 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.275 0.725 24 H 0.155 0.845 25 H 0.130 0.870 26 H 0.219 0.781 27 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.433 -12.491 0.281 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.177 5.177 3 C -0.473 4.473 4 H 0.083 0.917 5 C -0.199 4.199 6 N -0.528 5.528 7 Si 0.809 3.191 8 H -0.193 1.193 9 H -0.191 1.191 10 H -0.206 1.206 11 C 0.209 3.791 12 O -0.501 6.501 13 C 0.007 3.993 14 N -0.135 5.135 15 C -0.071 4.071 16 C -0.239 4.239 17 Cl -0.008 7.008 18 C -0.140 4.140 19 N -0.123 5.123 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.173 0.827 25 H 0.147 0.853 26 H 0.235 0.765 27 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.170 -11.352 -0.385 11.793 hybrid contribution 0.597 0.297 0.607 0.902 sum -2.573 -11.055 0.223 11.352 Atomic orbital electron populations 1.21601 0.78723 1.01468 1.01302 1.43786 1.06994 1.04114 1.62767 1.19480 1.00387 0.86124 1.41330 0.91741 1.25994 0.97025 1.02644 0.94237 1.70011 1.19349 1.30971 1.32497 0.85124 0.77979 0.77154 0.78858 1.19329 1.19119 1.20605 1.20943 0.88317 0.86210 0.83583 1.90572 1.15951 1.87423 1.56197 1.21714 0.88529 0.81016 1.08014 1.48083 1.25167 1.19212 1.21048 1.22844 0.99913 0.88081 0.96271 1.20799 1.04126 0.97148 1.01854 1.98297 1.91437 1.33688 1.77343 1.24309 1.00820 0.92545 0.96283 1.77596 1.01655 1.17701 1.15317 0.92850 0.92303 0.90679 0.91489 0.82711 0.85265 0.76462 0.77522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.40 8.44 127.77 1.08 5.48 15 2 N -0.46 -22.54 3.01 -658.89 -1.98 -24.53 15 3 C -0.35 -19.40 9.24 84.04 0.78 -18.62 15 4 H 0.06 3.96 7.45 -2.91 -0.02 3.94 15 5 C 0.00 0.19 5.04 84.92 0.43 0.62 15 6 N -0.89 -45.30 10.83 21.66 0.23 -45.07 15 7 Si 0.99 42.01 29.57 68.60 2.03 44.04 15 8 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 9 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 11 C 0.42 19.98 7.66 87.66 0.67 20.65 15 12 O -0.62 -35.61 15.43 -3.07 -0.05 -35.66 15 13 C 0.13 4.22 5.60 85.63 0.48 4.70 15 14 N -0.35 -12.04 3.40 -351.67 -1.20 -13.23 15 15 C 0.08 2.06 11.43 83.54 0.95 3.01 15 16 C -0.20 -5.56 6.65 22.02 0.15 -5.41 15 17 Cl -0.04 -0.81 29.30 -2.72 -0.08 -0.89 15 18 C 0.05 1.48 12.02 85.25 1.02 2.51 15 19 N -0.30 -11.70 11.65 -56.98 -0.66 -12.36 15 20 H 0.05 2.10 7.83 -2.38 -0.02 2.08 15 21 H 0.06 2.54 6.80 -2.38 -0.02 2.53 15 22 H 0.07 2.17 6.61 -2.39 -0.02 2.15 15 23 H 0.28 13.15 8.31 -92.71 -0.77 12.38 15 24 H 0.16 3.66 8.04 -2.39 -0.02 3.64 15 25 H 0.13 3.44 7.41 -2.39 -0.02 3.42 15 26 H 0.22 3.87 8.06 -2.91 -0.02 3.84 15 27 H 0.21 5.07 8.06 -2.91 -0.02 5.05 15 Total: -1.00 -72.70 259.15 5.05 -67.66 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.19 Total: 7.11 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 5.56 Total: 12.93 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -3.61 Total: -95.18 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.05 Total: -35.66 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -72.70 5.05 -67.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291532432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.821 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds