Wall clock time and date at job start Sun Mar 29 2020 23:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76204 * 102.99881 * 2 1 4 4 C 1.34170 * 125.24143 * 180.02562 * 3 2 1 5 5 C 1.38556 * 114.70987 * 179.97438 * 4 3 2 6 6 C 1.33235 * 114.98900 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.12016 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47438 * 90.00219 * 7 6 5 9 9 C 1.46895 * 111.00200 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47222 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99625 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99968 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00247 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99685 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47145 * 60.00603 * 14 12 10 16 16 H 1.48504 * 109.46973 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47430 * 300.00275 * 14 12 10 18 18 S 1.75857 * 109.75703 * 359.76232 * 6 5 4 19 19 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46975 * 60.00064 * 1 2 3 21 21 H 1.09004 * 109.47147 * 300.00027 * 1 2 3 22 22 H 1.08001 * 122.64429 * 359.95294 * 4 3 2 23 23 H 1.08006 * 122.50042 * 179.97438 * 5 4 3 24 24 H 1.09005 * 109.47396 * 210.00679 * 7 6 5 25 25 H 1.09005 * 109.46980 * 329.99901 * 7 6 5 26 26 H 1.00900 * 110.99472 * 56.04214 * 8 7 6 27 27 H 1.08999 * 109.47255 * 300.00271 * 9 8 7 28 28 H 1.09009 * 109.47083 * 60.00165 * 9 8 7 29 29 H 0.96997 * 120.00225 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.4522 2.2248 -0.0005 5 6 3.5119 3.6090 -0.0009 6 6 2.3296 4.2233 -0.0014 7 6 2.1286 5.7169 -0.0013 8 7 2.0638 6.2024 -1.3863 9 6 1.8674 7.6576 -1.4254 10 6 1.8066 8.1179 -2.8591 11 1 1.9037 7.4010 -3.6610 12 6 1.6259 9.4541 -3.1471 13 7 1.5072 10.3270 -2.1706 14 14 1.5499 10.0246 -4.9242 15 1 0.4175 9.3532 -5.6116 16 1 1.3514 11.4957 -4.9638 17 1 2.8207 9.6783 -5.6101 18 16 1.0390 3.0288 -0.0081 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 4.3357 1.6035 -0.0002 23 1 4.4469 4.1496 -0.0010 24 1 1.1980 5.9584 0.5123 25 1 2.9620 6.1957 0.5129 26 1 1.3397 5.7260 -1.9028 27 1 0.9348 7.9120 -0.9219 28 1 2.6988 8.1502 -0.9210 29 1 1.3804 11.2671 -2.3732 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308195588.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:45 Heat of formation + Delta-G solvation = 7.544912 kcal Electronic energy + Delta-G solvation = -12482.260475 eV Core-core repulsion = 10236.175802 eV Total energy + Delta-G solvation = -2246.084674 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99784 -36.97843 -34.63982 -31.61579 -29.98525 -28.66333 -26.28806 -24.02176 -23.26784 -20.74721 -19.03580 -18.17480 -17.21515 -16.72373 -16.18447 -15.94754 -15.40624 -14.89717 -14.77753 -14.42392 -13.99073 -13.79013 -13.75980 -13.20574 -13.04600 -12.94838 -12.66911 -12.55375 -12.12015 -11.85846 -11.39025 -11.28564 -10.68404 -10.57327 -9.51710 -9.22285 -8.34169 -8.23387 -6.35846 -0.15253 0.30087 0.37027 0.92727 1.40942 1.44453 1.52515 1.54071 1.71751 2.39350 3.08971 3.60132 3.85197 4.17399 4.23034 4.25097 4.42787 4.58913 4.65324 4.79316 5.01952 5.03877 5.20092 5.28292 5.48731 5.57628 5.96914 6.34883 6.60203 6.82608 7.34838 8.86874 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.046476 B = 0.004238 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.319642 B = 6604.849173 C = 6768.024607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.064 6.064 3 C -0.211 4.211 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.176 4.176 7 C 0.130 3.870 8 N -0.681 5.681 9 C 0.208 3.792 10 C -0.539 4.539 11 H 0.063 0.937 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.974 3.026 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.269 1.269 18 S 0.111 5.889 19 H 0.138 0.862 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.160 0.840 23 H 0.152 0.848 24 H 0.030 0.970 25 H 0.086 0.914 26 H 0.333 0.667 27 H -0.036 1.036 28 H 0.006 0.994 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 -20.135 5.543 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.173 5.827 3 C -0.440 4.440 4 C -0.154 4.154 5 C -0.144 4.144 6 C -0.297 4.297 7 C -0.001 4.001 8 N -0.312 5.312 9 C 0.081 3.919 10 C -0.577 4.577 11 H 0.081 0.919 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.798 3.202 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.193 1.193 18 S 0.372 5.628 19 H 0.157 0.843 20 H 0.105 0.895 21 H 0.108 0.892 22 H 0.178 0.822 23 H 0.170 0.830 24 H 0.048 0.952 25 H 0.104 0.896 26 H 0.150 0.850 27 H -0.018 1.018 28 H 0.024 0.976 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.573 -20.847 5.516 21.622 hybrid contribution -0.229 1.936 -0.344 1.979 sum -1.802 -18.911 5.173 19.689 Atomic orbital electron populations 1.23869 0.92588 1.09128 1.06435 1.85105 1.08485 0.96416 1.92711 1.26322 1.00504 1.01770 1.15396 1.20085 0.96743 0.94465 1.04091 1.20242 0.98530 0.93705 1.01889 1.24350 0.96409 0.98414 1.10522 1.20334 1.00664 0.87974 0.91125 1.60643 1.52847 1.06272 1.11450 1.19245 0.93049 0.83367 0.96268 1.21480 1.49865 0.93394 0.92937 0.91865 1.25943 0.94500 0.96691 1.02449 1.70071 1.50343 1.02864 1.33928 0.85375 0.79107 0.76984 0.78771 1.19123 1.20644 1.19349 1.84047 1.09208 0.94936 1.74653 0.84338 0.89521 0.89194 0.82236 0.83050 0.95204 0.89624 0.85013 1.01801 0.97567 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.84 113.37 1.12 -0.94 15 2 S -0.06 -1.26 22.72 -56.49 -1.28 -2.54 15 3 C -0.21 -5.26 6.69 66.89 0.45 -4.81 15 4 C -0.12 -2.94 10.13 21.42 0.22 -2.72 15 5 C -0.11 -3.16 10.04 21.22 0.21 -2.95 15 6 C -0.18 -5.51 6.01 24.56 0.15 -5.36 15 7 C 0.13 4.74 6.17 85.56 0.53 5.27 15 8 N -0.68 -30.11 6.48 -521.96 -3.38 -33.49 15 9 C 0.21 11.24 5.44 85.56 0.47 11.71 15 10 C -0.54 -31.00 9.32 25.60 0.24 -30.76 15 11 H 0.06 3.55 7.81 -2.91 -0.02 3.53 15 12 C 0.00 0.15 5.46 84.66 0.46 0.62 15 13 N -0.93 -56.28 13.29 21.45 0.28 -56.00 15 14 Si 0.97 44.37 29.54 68.60 2.03 46.40 15 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 18 S 0.11 2.96 22.30 -56.49 -1.26 1.70 15 19 H 0.14 1.14 8.14 -2.39 -0.02 1.12 15 20 H 0.09 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.09 1.19 8.14 -2.39 -0.02 1.17 15 22 H 0.16 3.31 8.06 -2.91 -0.02 3.29 15 23 H 0.15 3.99 8.06 -2.91 -0.02 3.97 15 24 H 0.03 1.09 8.14 -2.38 -0.02 1.07 15 25 H 0.09 3.09 8.14 -2.38 -0.02 3.07 15 26 H 0.33 14.28 8.71 -89.69 -0.78 13.49 15 27 H -0.04 -2.05 8.14 -2.39 -0.02 -2.07 15 28 H 0.01 0.36 8.14 -2.38 -0.02 0.34 15 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 Total: -1.00 -63.79 282.69 0.58 -63.21 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.36 Total: 10.68 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.83 Total: -29.95 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.10 Total: -89.49 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.54 Total: -0.84 kcal Total: -63.79 0.58 -63.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308195588.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.750 kcal (2) G-P(sol) polarization free energy of solvation -63.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds