Wall clock time and date at job start Sun Mar 29 2020 22:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 16 16 O 1.42900 * 109.47541 * 300.00304 * 14 13 12 17 17 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 18 18 N 1.46902 * 109.47034 * 185.00034 * 17 14 13 19 19 C 1.48531 * 111.00014 * 52.60568 * 18 17 14 20 20 C 1.54932 * 103.22607 * 159.71482 * 19 18 17 21 21 C 1.54591 * 102.92470 * 322.58713 * 20 19 18 22 22 C 1.47900 * 110.99637 * 169.99896 * 18 17 14 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 28 28 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 29 29 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 30 30 H 0.96697 * 113.99468 * 300.00185 * 16 14 13 31 31 H 1.08996 * 109.46831 * 305.00414 * 17 14 13 32 32 H 1.08998 * 109.46668 * 64.99978 * 17 14 13 33 33 H 1.08995 * 110.66909 * 278.15693 * 19 18 17 34 34 H 1.09005 * 110.66689 * 41.28044 * 19 18 17 35 35 H 1.09004 * 110.72480 * 204.22449 * 20 19 18 36 36 H 1.09001 * 110.72283 * 80.95064 * 20 19 18 37 37 H 1.09003 * 110.30960 * 263.03571 * 21 20 19 38 38 H 1.09000 * 110.31075 * 140.87261 * 21 20 19 39 39 H 1.09001 * 109.92080 * 333.50825 * 22 18 17 40 40 H 1.09003 * 109.91696 * 94.60521 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 1 1.9201 -1.3564 -3.8032 16 8 3.9012 -1.0484 -3.3043 17 6 2.6622 0.4208 -4.7691 18 7 3.0403 -0.3298 -5.9740 19 6 2.1521 -1.5039 -6.1704 20 6 2.3296 -1.8353 -7.6734 21 6 2.4420 -0.4377 -8.3246 22 6 2.8837 0.5016 -7.1872 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 2.9172 -1.1204 -1.0288 28 1 1.0871 0.6165 -2.5525 29 1 2.7588 1.0464 -2.1181 30 1 4.5563 -0.3694 -3.0923 31 1 1.6864 0.8824 -4.9199 32 1 3.4044 1.1951 -4.5755 33 1 2.4769 -2.3399 -5.5511 34 1 1.1161 -1.2431 -5.9536 35 1 1.4602 -2.3702 -8.0558 36 1 3.2405 -2.4113 -7.8364 37 1 1.4752 -0.1254 -8.7194 38 1 3.1896 -0.4490 -9.1178 39 1 2.1233 1.2643 -7.0191 40 1 3.8334 0.9736 -7.4390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309001518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:31 Heat of formation + Delta-G solvation = -52.990061 kcal Electronic energy + Delta-G solvation = -17858.026562 eV Core-core repulsion = 15093.196004 eV Total energy + Delta-G solvation = -2764.830558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.30110 -37.25395 -35.18317 -32.57690 -32.21549 -29.59242 -28.98029 -27.30118 -25.24151 -23.92337 -21.88220 -20.91587 -20.40893 -19.70078 -16.87445 -16.34177 -15.98559 -15.74753 -15.18176 -14.84244 -14.24581 -14.04949 -13.46889 -13.35690 -13.11376 -12.61905 -12.34599 -12.11345 -11.71282 -11.57322 -11.43088 -11.29597 -11.13621 -10.90881 -10.80043 -10.73697 -10.48156 -10.26638 -10.14546 -10.09926 -9.45336 -8.81272 -8.46600 -8.45099 -7.24618 -6.01756 -4.08010 3.32732 3.36579 3.40122 3.85517 4.40200 4.47403 4.55707 4.68281 4.85249 4.93030 5.15353 5.25666 5.29544 5.37221 5.48920 5.57006 5.60745 5.62277 5.63694 5.68979 5.86083 5.91640 5.99543 6.02532 6.21204 6.43049 6.81554 6.86826 6.94899 7.13063 7.23404 7.50015 7.79625 7.89896 7.98801 8.28530 8.41816 8.70538 9.03430 9.57968 11.04654 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053924 B = 0.004064 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.127484 B = 6887.979534 C = 7038.901382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.684 5.684 13 C 0.031 3.969 14 C 0.111 3.889 15 H 0.103 0.897 16 O -0.548 6.548 17 C 0.015 3.985 18 N -0.507 5.507 19 C 0.032 3.968 20 C -0.124 4.124 21 C -0.131 4.131 22 C 0.032 3.968 23 H 0.080 0.920 24 H 0.002 0.998 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.338 0.662 28 H 0.068 0.932 29 H 0.020 0.980 30 H 0.368 0.632 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -0.276 -18.423 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.016 0.984 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.316 5.316 13 C -0.100 4.100 14 C 0.052 3.948 15 H 0.120 0.880 16 O -0.352 6.352 17 C -0.115 4.115 18 N -0.231 5.231 19 C -0.096 4.096 20 C -0.162 4.162 21 C -0.169 4.169 22 C -0.096 4.096 23 H 0.099 0.901 24 H 0.021 0.979 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.156 0.844 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.214 0.786 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.105 -1.115 -18.476 18.629 hybrid contribution 0.333 1.154 1.129 1.648 sum 2.438 0.040 -17.347 17.518 Atomic orbital electron populations 1.21719 0.97997 0.99318 0.99220 1.19109 0.92557 0.92248 0.85750 0.98355 1.21246 1.31443 1.12531 0.90446 0.92184 1.24928 0.95047 0.94999 0.99066 1.69892 1.36700 1.22928 1.23544 0.86565 0.79103 0.79800 0.81962 1.21333 1.20154 1.20291 1.60634 1.32872 1.32435 1.05649 1.22536 1.00141 0.94508 0.92828 1.22071 0.85229 0.96226 0.91320 0.87970 1.86588 1.19300 1.37359 1.91934 1.23066 0.99788 0.96996 0.91606 1.64781 1.50300 1.06769 1.01273 1.23282 0.95018 0.94770 0.96508 1.22481 1.02133 0.96704 0.94883 1.22390 1.01263 0.95386 0.97862 1.22908 1.00639 0.95543 0.90488 0.90112 0.97910 0.94949 0.92900 0.84388 0.91382 0.96201 0.78560 0.93868 0.90442 0.89291 0.93787 0.91190 0.90737 0.91701 0.91162 0.93998 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.19 37.16 0.34 -2.81 16 2 C 0.21 5.45 2.60 -68.87 -0.18 5.27 16 3 H 0.00 -0.03 7.80 -51.93 -0.40 -0.44 16 4 C -0.52 -14.49 8.59 -34.44 -0.30 -14.78 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.12 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.68 -14.94 6.30 -107.95 -0.68 -15.62 16 13 C 0.03 0.55 5.19 -3.82 -0.02 0.53 16 14 C 0.11 1.65 2.96 -26.73 -0.08 1.57 16 15 H 0.10 1.62 6.52 -51.92 -0.34 1.28 16 16 O -0.55 -8.45 12.62 -35.23 -0.44 -8.90 16 17 C 0.01 0.18 4.66 -3.82 -0.02 0.16 16 18 N -0.51 -6.15 5.34 -230.46 -1.23 -7.38 16 19 C 0.03 0.36 5.09 -1.90 -0.01 0.36 16 20 C -0.12 -1.15 7.06 -24.88 -0.18 -1.32 16 21 C -0.13 -1.12 6.93 -25.38 -0.18 -1.30 16 22 C 0.03 0.32 6.69 -2.76 -0.02 0.31 16 23 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 24 H 0.00 0.04 7.45 -51.93 -0.39 -0.34 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.34 7.42 7.61 -39.30 -0.30 7.12 16 28 H 0.07 1.23 7.44 -51.93 -0.39 0.84 16 29 H 0.02 0.35 8.05 -51.93 -0.42 -0.06 16 30 H 0.37 4.65 9.04 45.56 0.41 5.06 16 31 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.12 7.56 -51.93 -0.39 0.73 16 34 H 0.04 0.50 8.01 -51.93 -0.42 0.09 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.41 7.57 -51.93 -0.39 0.02 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -29.71 314.58 -8.97 -38.69 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.24 Total: 7.48 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.72 Total: -10.39 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -1.28 Total: -48.11 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.44 Total: -8.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.71 -8.97 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309001518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.304 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds