Wall clock time and date at job start Sun Mar 29 2020 22:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 16 16 O 1.42900 * 109.47541 * 300.00304 * 14 13 12 17 17 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 18 18 N 1.46902 * 109.47034 * 185.00034 * 17 14 13 19 19 C 1.48531 * 111.00014 * 52.60568 * 18 17 14 20 20 C 1.54932 * 103.22607 * 159.71482 * 19 18 17 21 21 C 1.54591 * 102.92470 * 322.58713 * 20 19 18 22 22 C 1.47900 * 110.99637 * 169.99896 * 18 17 14 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 28 28 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 29 29 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 30 30 H 0.96697 * 113.99468 * 300.00185 * 16 14 13 31 31 H 1.08996 * 109.46831 * 305.00414 * 17 14 13 32 32 H 1.08998 * 109.46668 * 64.99978 * 17 14 13 33 33 H 1.08995 * 110.66909 * 278.15693 * 19 18 17 34 34 H 1.09005 * 110.66689 * 41.28044 * 19 18 17 35 35 H 1.09004 * 110.72480 * 204.22449 * 20 19 18 36 36 H 1.09001 * 110.72283 * 80.95064 * 20 19 18 37 37 H 1.09003 * 110.30960 * 263.03571 * 21 20 19 38 38 H 1.09000 * 110.31075 * 140.87261 * 21 20 19 39 39 H 1.09001 * 109.92080 * 333.50825 * 22 18 17 40 40 H 1.09003 * 109.91696 * 94.60521 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 1 1.9201 -1.3564 -3.8032 16 8 3.9012 -1.0484 -3.3043 17 6 2.6622 0.4208 -4.7691 18 7 3.0403 -0.3298 -5.9740 19 6 2.1521 -1.5039 -6.1704 20 6 2.3296 -1.8353 -7.6734 21 6 2.4420 -0.4377 -8.3246 22 6 2.8837 0.5016 -7.1872 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 2.9172 -1.1204 -1.0288 28 1 1.0871 0.6165 -2.5525 29 1 2.7588 1.0464 -2.1181 30 1 4.5563 -0.3694 -3.0923 31 1 1.6864 0.8824 -4.9199 32 1 3.4044 1.1951 -4.5755 33 1 2.4769 -2.3399 -5.5511 34 1 1.1161 -1.2431 -5.9536 35 1 1.4602 -2.3702 -8.0558 36 1 3.2405 -2.4113 -7.8364 37 1 1.4752 -0.1254 -8.7194 38 1 3.1896 -0.4490 -9.1178 39 1 2.1233 1.2643 -7.0191 40 1 3.8334 0.9736 -7.4390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309001518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:31 Heat of formation + Delta-G solvation = -76.437962 kcal Electronic energy + Delta-G solvation = -17859.043339 eV Core-core repulsion = 15093.196004 eV Total energy + Delta-G solvation = -2765.847335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27336 -38.53356 -36.91940 -34.37769 -33.32810 -31.19267 -29.85062 -28.75980 -27.31371 -25.24169 -23.05530 -21.88547 -21.55216 -21.35848 -18.69647 -17.53756 -17.10955 -17.02483 -16.72856 -16.16957 -15.65193 -15.23491 -15.18448 -14.60881 -14.39757 -14.13978 -13.45250 -13.26364 -13.18953 -13.06558 -12.80518 -12.68448 -12.40778 -12.30425 -12.20577 -12.19860 -12.04234 -11.98049 -11.62640 -11.42778 -10.98881 -10.70592 -10.57437 -9.36226 -9.06073 -8.14760 -6.29105 1.42186 1.44250 1.51991 2.40884 2.89635 3.13673 3.45237 3.60939 3.76577 3.86504 4.07200 4.13630 4.20350 4.26683 4.35037 4.46093 4.63379 4.66829 4.71091 4.75607 4.83847 4.93401 4.98465 5.04456 5.07829 5.15368 5.19262 5.21472 5.32372 5.44652 5.65100 5.83826 5.94950 6.04239 6.20699 6.46207 6.75735 6.88562 6.99990 7.41461 8.90767 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053924 B = 0.004064 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.127484 B = 6887.979534 C = 7038.901382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.030 1.030 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.270 1.270 12 N -0.684 5.684 13 C 0.033 3.967 14 C 0.126 3.874 15 H 0.092 0.908 16 O -0.561 6.561 17 C 0.024 3.976 18 N -0.520 5.520 19 C 0.028 3.972 20 C -0.120 4.120 21 C -0.127 4.127 22 C 0.029 3.971 23 H 0.057 0.943 24 H 0.022 0.978 25 H 0.026 0.974 26 H 0.263 0.737 27 H 0.336 0.664 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.380 0.620 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 -0.550 -19.463 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H -0.013 1.013 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.195 1.195 12 N -0.316 5.316 13 C -0.097 4.097 14 C 0.066 3.934 15 H 0.110 0.890 16 O -0.367 6.367 17 C -0.106 4.106 18 N -0.245 5.245 19 C -0.100 4.100 20 C -0.158 4.158 21 C -0.165 4.165 22 C -0.099 4.099 23 H 0.076 0.924 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.154 0.846 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.228 0.772 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.532 -1.385 -19.540 19.752 hybrid contribution 0.216 1.259 1.410 1.902 sum 2.748 -0.126 -18.131 18.338 Atomic orbital electron populations 1.21547 0.97766 0.98800 0.99056 1.18932 0.92735 0.90753 0.86980 1.01277 1.21568 1.31853 1.12762 0.91730 0.92456 1.25741 0.95106 0.95666 1.02046 1.70014 1.37387 1.24018 1.24292 0.85530 0.78781 0.78631 0.78196 1.20767 1.19708 1.19518 1.60544 1.32809 1.32966 1.05248 1.22601 1.00371 0.94266 0.92504 1.21840 0.84785 0.95912 0.90824 0.88977 1.86558 1.19685 1.38400 1.92011 1.22909 1.00340 0.96386 0.90929 1.64766 1.50637 1.07287 1.01789 1.23281 0.94696 0.94108 0.97896 1.22477 1.02701 0.97389 0.93276 1.22397 1.02253 0.94298 0.97518 1.22990 1.01122 0.95710 0.90048 0.92381 0.95918 0.95453 0.92767 0.84561 0.91523 0.95999 0.77165 0.93445 0.89691 0.91011 0.93952 0.89771 0.90945 0.90589 0.89942 0.93690 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.19 71.98 0.66 -5.12 16 2 C 0.21 11.20 2.60 44.17 0.11 11.32 16 3 H -0.03 -1.73 7.80 -2.39 -0.02 -1.75 16 4 C -0.54 -30.44 8.59 25.60 0.22 -30.22 16 5 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 6 C 0.01 0.77 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 8 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 N -0.68 -29.92 6.30 -495.46 -3.12 -33.04 16 13 C 0.03 1.17 5.19 86.30 0.45 1.61 16 14 C 0.13 3.65 2.96 30.59 0.09 3.74 16 15 H 0.09 2.88 6.52 -2.38 -0.02 2.87 16 16 O -0.56 -16.86 12.62 -148.98 -1.88 -18.74 16 17 C 0.02 0.56 4.66 86.30 0.40 0.96 16 18 N -0.52 -11.85 5.34 -883.03 -4.72 -16.56 16 19 C 0.03 0.61 5.09 86.65 0.44 1.05 16 20 C -0.12 -2.00 7.06 31.80 0.22 -1.78 16 21 C -0.13 -1.85 6.93 31.47 0.22 -1.63 16 22 C 0.03 0.52 6.69 86.45 0.58 1.10 16 23 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 24 H 0.02 1.01 7.45 -2.38 -0.02 0.99 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.34 14.81 7.61 -89.70 -0.68 14.13 16 28 H 0.07 2.35 7.44 -2.39 -0.02 2.34 16 29 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 30 H 0.38 9.23 9.04 -74.06 -0.67 8.56 16 31 H 0.05 1.09 7.81 -2.39 -0.02 1.07 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.79 7.56 -2.39 -0.02 1.78 16 34 H 0.04 0.93 8.01 -2.38 -0.02 0.91 16 35 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.04 0.78 7.57 -2.39 -0.02 0.77 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -62.46 314.58 -3.94 -66.41 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.34 Total: 26.83 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 3.85 Total: -17.75 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -7.60 Total: -102.75 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.88 Total: -18.74 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -62.46 -3.94 -66.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309001518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.030 kcal (2) G-P(sol) polarization free energy of solvation -62.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds