Wall clock time and date at job start Sun Mar 29 2020 22:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 H 1.08998 * 109.47191 * 54.99996 * 3 2 1 5 5 O 1.42907 * 109.46986 * 295.00121 * 3 2 1 6 6 C 1.52999 * 109.47207 * 175.00293 * 3 2 1 7 7 N 1.46901 * 109.46990 * 182.85620 * 6 3 2 8 8 C 1.46961 * 110.99960 * 199.55334 * 7 6 3 9 9 C 1.53053 * 109.35999 * 176.81382 * 8 7 6 10 10 N 1.46955 * 109.36451 * 58.40806 * 9 8 7 11 11 C 1.46898 * 110.99708 * 176.80557 * 10 9 8 12 12 C 1.50696 * 109.47741 * 293.79880 * 11 10 9 13 13 H 1.08009 * 119.99620 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00538 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99858 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00403 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47261 * 89.99182 * 16 14 12 18 18 H 1.48496 * 109.47151 * 209.99738 * 16 14 12 19 19 H 1.48502 * 109.46629 * 329.99602 * 16 14 12 20 20 C 1.46956 * 110.87784 * 300.67536 * 10 9 8 21 21 C 1.46955 * 110.99649 * 75.76084 * 7 6 3 22 22 H 1.08997 * 109.47017 * 300.00115 * 1 2 3 23 23 H 1.08996 * 109.47527 * 59.99874 * 1 2 3 24 24 H 1.08996 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47328 * 240.00215 * 2 1 3 26 26 H 1.08999 * 109.47592 * 119.99608 * 2 1 3 27 27 H 0.96708 * 113.99593 * 300.00276 * 5 3 2 28 28 H 1.09005 * 109.47012 * 62.86172 * 6 3 2 29 29 H 1.09004 * 109.47109 * 302.85718 * 6 3 2 30 30 H 1.08997 * 109.49016 * 296.78702 * 8 7 6 31 31 H 1.08997 * 109.48349 * 56.84919 * 8 7 6 32 32 H 1.08997 * 109.49169 * 298.43625 * 9 8 7 33 33 H 1.09000 * 109.48245 * 178.37565 * 9 8 7 34 34 H 1.09002 * 109.47360 * 53.80104 * 11 10 9 35 35 H 1.09008 * 109.46885 * 173.79594 * 11 10 9 36 36 H 0.96998 * 120.00046 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.48690 * 299.35070 * 20 10 9 38 38 H 1.09002 * 109.48819 * 179.28758 * 20 10 9 39 39 H 1.09000 * 109.49246 * 303.15209 * 21 7 6 40 40 H 1.08997 * 109.49131 * 63.21859 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4444 0.1256 7 7 4.0488 2.8297 0.1944 8 6 5.4760 2.9065 -0.1472 9 6 5.9210 4.3709 -0.1414 10 7 5.6679 4.9519 1.1845 11 6 6.1519 6.3371 1.2533 12 6 7.6546 6.3505 1.1406 13 1 8.1961 5.4226 1.0294 14 6 8.3384 7.5470 1.1805 15 7 7.6791 8.6769 1.3164 16 14 10.2010 7.5636 1.0401 17 1 10.5887 7.6747 -0.3890 18 1 10.7437 8.7235 1.7919 19 1 10.7512 6.3057 1.6059 20 6 4.2407 4.8750 1.5262 21 6 3.7957 3.4106 1.5204 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0141 1.6542 -2.0140 28 1 4.0015 0.9497 -0.7420 29 1 3.8554 0.9126 1.0317 30 1 6.0563 2.3471 0.5866 31 1 5.6360 2.4817 -1.1382 32 1 5.3599 4.9245 -0.8942 33 1 6.9860 4.4281 -0.3663 34 1 5.7211 6.9137 0.4347 35 1 5.8549 6.7789 2.2046 36 1 8.1601 9.5187 1.3449 37 1 3.6605 5.4344 0.7924 38 1 4.0806 5.2998 2.5172 39 1 2.7306 3.3534 1.7452 40 1 4.3568 2.8570 2.2731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330363593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:04 Heat of formation + Delta-G solvation = -50.849192 kcal Electronic energy + Delta-G solvation = -18051.846345 eV Core-core repulsion = 15287.108622 eV Total energy + Delta-G solvation = -2764.737723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.10010 -37.50831 -34.73442 -32.91125 -32.40097 -30.41653 -29.29336 -26.96292 -24.93389 -23.04542 -22.64162 -21.47405 -21.07180 -19.11688 -16.48382 -16.28771 -16.05559 -15.50927 -14.99257 -14.54629 -14.47700 -14.19110 -13.74986 -13.34329 -13.24920 -13.14848 -12.28206 -12.18901 -12.01595 -11.87313 -11.48247 -11.19537 -11.17901 -10.97301 -10.80810 -10.67228 -10.61124 -10.35477 -10.31455 -9.87832 -9.63866 -9.13594 -8.41775 -8.04114 -7.18336 -6.00217 -4.01696 3.32925 3.38956 3.43188 3.93106 4.44182 4.48429 4.63452 4.86211 4.91966 5.00104 5.13156 5.29551 5.35009 5.39617 5.54135 5.58965 5.61462 5.65163 5.71189 5.80425 5.85839 5.94177 6.03457 6.06451 6.09103 6.27144 6.49337 6.64353 6.72593 7.22896 7.26895 7.39642 7.42307 7.71779 7.82720 8.12568 8.24939 8.58790 9.05864 9.62387 11.10712 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.059570 B = 0.004277 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.918951 B = 6545.669821 C = 6727.202817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.112 3.888 4 H 0.096 0.904 5 O -0.546 6.546 6 C 0.022 3.978 7 N -0.529 5.529 8 C 0.059 3.941 9 C 0.068 3.932 10 N -0.539 5.539 11 C 0.193 3.807 12 C -0.507 4.507 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.057 3.943 21 C 0.061 3.939 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.368 0.632 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.085 0.915 34 H -0.008 1.008 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.802 -16.486 -2.953 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.053 3.947 4 H 0.113 0.887 5 O -0.350 6.350 6 C -0.106 4.106 7 N -0.254 5.254 8 C -0.069 4.069 9 C -0.061 4.061 10 N -0.264 5.264 11 C 0.068 3.932 12 C -0.545 4.545 13 H 0.080 0.920 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.072 4.072 21 C -0.067 4.067 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.214 0.786 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.010 0.990 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.071 -15.870 -2.513 19.512 hybrid contribution 1.355 -0.278 -0.337 1.424 sum -9.716 -16.148 -2.850 19.060 Atomic orbital electron populations 1.21682 0.95107 1.01191 1.02498 1.22235 0.97159 0.97556 1.02509 1.21933 0.92663 0.91796 0.88344 0.88654 1.86627 1.76139 1.57210 1.15058 1.22837 0.96343 0.90401 1.01064 1.62089 1.17588 1.16824 1.28903 1.22257 0.86801 0.98337 0.99510 1.21976 1.01261 0.92064 0.90785 1.62284 1.13399 1.23788 1.26950 1.19701 0.95498 0.81635 0.96358 1.21156 0.91357 0.92678 1.49348 0.91964 1.24994 0.98637 0.95521 0.95502 1.69965 1.35587 0.97625 1.50642 0.86504 0.85384 0.77580 0.77983 1.20738 1.21272 1.19820 1.22048 0.90519 0.94285 1.00387 1.22189 0.99555 0.96102 0.88842 0.92776 0.92007 0.93063 0.91755 0.91307 0.78589 0.91005 0.94179 0.94586 0.91361 0.95256 0.89653 0.99042 0.95252 0.92941 0.95027 0.91125 0.91346 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.81 37.16 0.36 -0.81 16 2 C -0.16 -1.26 5.61 -26.73 -0.15 -1.41 16 3 C 0.11 1.18 3.04 -26.73 -0.08 1.10 16 4 H 0.10 1.11 6.79 -51.93 -0.35 0.75 16 5 O -0.55 -6.49 12.79 -35.23 -0.45 -6.94 16 6 C 0.02 0.26 4.65 -3.82 -0.02 0.24 16 7 N -0.53 -8.04 4.56 -234.46 -1.07 -9.10 16 8 C 0.06 0.96 5.57 -3.76 -0.02 0.94 16 9 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 10 N -0.54 -12.09 4.70 -235.91 -1.11 -13.20 16 11 C 0.19 5.18 4.72 -4.98 -0.02 5.16 16 12 C -0.51 -14.44 8.47 -34.45 -0.29 -14.74 16 13 H 0.06 1.75 7.13 -52.48 -0.37 1.37 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 16 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.06 1.09 5.61 -3.77 -0.02 1.07 16 21 C 0.06 0.97 5.43 -3.77 -0.02 0.95 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.53 7.82 -51.93 -0.41 0.13 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.37 3.15 9.05 45.56 0.41 3.57 16 28 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 29 H 0.04 0.45 8.00 -51.93 -0.42 0.04 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.83 6.79 -51.93 -0.35 1.47 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.03 0.84 8.03 -51.92 -0.42 0.42 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 39 H 0.07 0.96 6.75 -51.93 -0.35 0.61 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -31.31 315.81 -8.97 -40.28 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.44 Total: -1.55 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.38 Total: -4.67 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -1.44 Total: -48.66 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.45 Total: -6.94 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.31 -8.97 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.570 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds