Wall clock time and date at job start Sun Mar 29 2020 22:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 H 1.08998 * 109.47191 * 54.99996 * 3 2 1 5 5 O 1.42907 * 109.46986 * 295.00121 * 3 2 1 6 6 C 1.52999 * 109.47207 * 175.00293 * 3 2 1 7 7 N 1.46901 * 109.46990 * 182.85620 * 6 3 2 8 8 C 1.46961 * 110.99960 * 199.55334 * 7 6 3 9 9 C 1.53053 * 109.35999 * 176.81382 * 8 7 6 10 10 N 1.46955 * 109.36451 * 58.40806 * 9 8 7 11 11 C 1.46898 * 110.99708 * 176.80557 * 10 9 8 12 12 C 1.50696 * 109.47741 * 293.79880 * 11 10 9 13 13 H 1.08009 * 119.99620 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00538 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99858 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00403 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47261 * 89.99182 * 16 14 12 18 18 H 1.48496 * 109.47151 * 209.99738 * 16 14 12 19 19 H 1.48502 * 109.46629 * 329.99602 * 16 14 12 20 20 C 1.46956 * 110.87784 * 300.67536 * 10 9 8 21 21 C 1.46955 * 110.99649 * 75.76084 * 7 6 3 22 22 H 1.08997 * 109.47017 * 300.00115 * 1 2 3 23 23 H 1.08996 * 109.47527 * 59.99874 * 1 2 3 24 24 H 1.08996 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47328 * 240.00215 * 2 1 3 26 26 H 1.08999 * 109.47592 * 119.99608 * 2 1 3 27 27 H 0.96708 * 113.99593 * 300.00276 * 5 3 2 28 28 H 1.09005 * 109.47012 * 62.86172 * 6 3 2 29 29 H 1.09004 * 109.47109 * 302.85718 * 6 3 2 30 30 H 1.08997 * 109.49016 * 296.78702 * 8 7 6 31 31 H 1.08997 * 109.48349 * 56.84919 * 8 7 6 32 32 H 1.08997 * 109.49169 * 298.43625 * 9 8 7 33 33 H 1.09000 * 109.48245 * 178.37565 * 9 8 7 34 34 H 1.09002 * 109.47360 * 53.80104 * 11 10 9 35 35 H 1.09008 * 109.46885 * 173.79594 * 11 10 9 36 36 H 0.96998 * 120.00046 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.48690 * 299.35070 * 20 10 9 38 38 H 1.09002 * 109.48819 * 179.28758 * 20 10 9 39 39 H 1.09000 * 109.49246 * 303.15209 * 21 7 6 40 40 H 1.08997 * 109.49131 * 63.21859 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4444 0.1256 7 7 4.0488 2.8297 0.1944 8 6 5.4760 2.9065 -0.1472 9 6 5.9210 4.3709 -0.1414 10 7 5.6679 4.9519 1.1845 11 6 6.1519 6.3371 1.2533 12 6 7.6546 6.3505 1.1406 13 1 8.1961 5.4226 1.0294 14 6 8.3384 7.5470 1.1805 15 7 7.6791 8.6769 1.3164 16 14 10.2010 7.5636 1.0401 17 1 10.5887 7.6747 -0.3890 18 1 10.7437 8.7235 1.7919 19 1 10.7512 6.3057 1.6059 20 6 4.2407 4.8750 1.5262 21 6 3.7957 3.4106 1.5204 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0141 1.6542 -2.0140 28 1 4.0015 0.9497 -0.7420 29 1 3.8554 0.9126 1.0317 30 1 6.0563 2.3471 0.5866 31 1 5.6360 2.4817 -1.1382 32 1 5.3599 4.9245 -0.8942 33 1 6.9860 4.4281 -0.3663 34 1 5.7211 6.9137 0.4347 35 1 5.8549 6.7789 2.2046 36 1 8.1601 9.5187 1.3449 37 1 3.6605 5.4344 0.7924 38 1 4.0806 5.2998 2.5172 39 1 2.7306 3.3534 1.7452 40 1 4.3568 2.8570 2.2731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330363593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:04 Heat of formation + Delta-G solvation = -75.642653 kcal Electronic energy + Delta-G solvation = -18052.921470 eV Core-core repulsion = 15287.108622 eV Total energy + Delta-G solvation = -2765.812848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36417 -38.62503 -36.27696 -34.51346 -33.59101 -31.88063 -30.68305 -28.56415 -26.47353 -24.48545 -23.94496 -22.94499 -22.04549 -20.62969 -18.50480 -17.47594 -17.07830 -16.75137 -16.32068 -15.96133 -15.85715 -15.64324 -15.25391 -14.87740 -14.52977 -14.18704 -13.99845 -13.44776 -13.07975 -12.93412 -12.87862 -12.79419 -12.58949 -12.45575 -12.25429 -12.12851 -12.00438 -11.79070 -11.54635 -11.51437 -11.19919 -10.67448 -10.63218 -9.24444 -9.04519 -8.21689 -6.32774 1.40584 1.42562 1.54231 2.39627 2.85417 3.10299 3.28372 3.71119 3.78439 3.96809 4.14797 4.20275 4.23682 4.28242 4.38600 4.45152 4.49907 4.64608 4.68718 4.73431 4.80993 4.93012 4.94947 4.98304 5.01756 5.05583 5.13647 5.20842 5.25928 5.35995 5.44106 5.62312 6.00181 6.07031 6.13828 6.34005 6.59817 6.83060 7.02900 7.37185 8.89876 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.059570 B = 0.004277 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.918951 B = 6545.669821 C = 6727.202817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.116 3.884 4 H 0.082 0.918 5 O -0.568 6.568 6 C 0.025 3.975 7 N -0.542 5.542 8 C 0.071 3.929 9 C 0.068 3.932 10 N -0.543 5.543 11 C 0.208 3.792 12 C -0.524 4.524 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.974 3.026 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.054 3.946 21 C 0.072 3.928 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.382 0.618 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.012 0.988 33 H 0.069 0.931 34 H -0.043 1.043 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.016 0.984 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 -18.920 -3.300 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.056 3.944 4 H 0.099 0.901 5 O -0.375 6.375 6 C -0.103 4.103 7 N -0.267 5.267 8 C -0.057 4.057 9 C -0.060 4.060 10 N -0.268 5.268 11 C 0.082 3.918 12 C -0.562 4.562 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.577 5.577 16 Si 0.798 3.202 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.074 4.074 21 C -0.056 4.056 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.230 0.770 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.088 0.912 34 H -0.025 1.025 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.614 -18.341 -2.870 21.385 hybrid contribution 1.123 0.490 -0.247 1.250 sum -9.491 -17.851 -3.118 20.457 Atomic orbital electron populations 1.21680 0.95227 1.01815 1.01784 1.22155 0.96944 0.95830 1.03665 1.21909 0.91855 0.93099 0.87545 0.90053 1.86594 1.76571 1.58218 1.16100 1.22931 0.96921 0.88074 1.02363 1.62062 1.16743 1.19581 1.28300 1.22112 0.87572 0.94836 1.01160 1.21987 1.00225 0.94788 0.89028 1.62236 1.15471 1.20723 1.28380 1.19361 0.95189 0.83792 0.93502 1.21440 0.92126 0.93029 1.49617 0.91757 1.25978 1.04224 0.94924 0.94712 1.70102 1.37883 0.98382 1.51284 0.85319 0.78536 0.77976 0.78401 1.19691 1.20702 1.18731 1.22144 0.88424 0.97147 0.99723 1.22065 1.00708 0.93253 0.89588 0.93314 0.92948 0.91764 0.90358 0.90332 0.77019 0.89169 0.93171 0.94476 0.88669 0.96998 0.91226 1.02499 0.97912 0.92630 0.96587 0.91220 0.89203 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.81 71.98 0.71 -1.32 16 2 C -0.15 -1.92 5.61 30.59 0.17 -1.75 16 3 C 0.12 2.14 3.04 30.60 0.09 2.23 16 4 H 0.08 1.73 6.79 -2.39 -0.02 1.71 16 5 O -0.57 -12.40 12.79 -148.98 -1.91 -14.30 16 6 C 0.02 0.49 4.65 86.30 0.40 0.89 16 7 N -0.54 -15.37 4.56 -895.70 -4.08 -19.46 16 8 C 0.07 2.18 5.57 86.31 0.48 2.66 16 9 C 0.07 2.80 5.43 86.31 0.47 3.27 16 10 N -0.54 -25.00 4.70 -900.29 -4.23 -29.23 16 11 C 0.21 11.70 4.72 85.56 0.40 12.10 16 12 C -0.52 -30.55 8.47 25.60 0.22 -30.33 16 13 H 0.06 3.65 7.13 -2.91 -0.02 3.63 16 14 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 15 N -0.94 -57.76 13.29 21.44 0.28 -57.47 16 16 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 20 C 0.05 2.13 5.61 86.31 0.48 2.61 16 21 C 0.07 2.19 5.43 86.31 0.47 2.65 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.38 5.65 9.05 -74.05 -0.67 4.98 16 28 H 0.09 1.49 7.85 -2.38 -0.02 1.47 16 29 H 0.05 0.94 8.00 -2.38 -0.02 0.92 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 2.42 8.00 -2.39 -0.02 2.41 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 3.03 6.79 -2.39 -0.02 3.01 16 34 H -0.04 -2.63 8.12 -2.39 -0.02 -2.65 16 35 H 0.00 0.17 8.03 -2.38 -0.02 0.15 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 2.69 8.07 -2.39 -0.02 2.67 16 39 H 0.09 2.36 6.75 -2.39 -0.02 2.35 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.63 315.81 -3.23 -71.86 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.32 Total: 8.30 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.36 Total: -6.55 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -8.03 Total: -106.16 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.91 Total: -14.30 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.63 -3.23 -71.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.788 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds