Wall clock time and date at job start Sun Mar 29 2020 22:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99837 * 2 1 4 4 C 1.50697 * 109.47446 * 66.04777 * 3 2 1 5 5 H 1.08008 * 119.99360 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00458 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99897 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00202 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47004 * 89.99731 * 8 6 4 10 10 H 1.48500 * 109.47128 * 209.99992 * 8 6 4 11 11 H 1.48498 * 109.47347 * 329.99868 * 8 6 4 12 12 C 1.46897 * 110.99731 * 236.05058 * 2 1 3 13 13 C 1.53126 * 109.52417 * 298.95032 * 12 2 1 14 14 C 1.53032 * 109.28291 * 177.62809 * 13 12 2 15 15 N 1.46854 * 109.52047 * 300.82193 * 14 13 12 16 16 C 1.46899 * 110.99699 * 185.84170 * 15 14 13 17 17 C 1.52997 * 109.47584 * 75.80412 * 16 15 14 18 18 O 1.42904 * 109.47373 * 65.02283 * 17 16 15 19 19 C 1.46843 * 111.19951 * 61.74071 * 15 14 13 20 20 C 1.53038 * 109.52230 * 298.26018 * 19 15 14 21 21 H 1.09003 * 109.46818 * 183.95637 * 1 2 3 22 22 H 1.09001 * 109.46816 * 303.95042 * 1 2 3 23 23 H 1.08994 * 109.47092 * 63.95653 * 1 2 3 24 24 H 1.09002 * 109.47364 * 186.05218 * 3 2 1 25 25 H 1.09001 * 109.47333 * 306.04871 * 3 2 1 26 26 H 0.96994 * 120.00226 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.52478 * 178.82534 * 12 2 1 28 28 H 1.08998 * 109.50370 * 57.67993 * 13 12 2 29 29 H 1.09002 * 109.49955 * 297.56887 * 13 12 2 30 30 H 1.08994 * 109.46440 * 180.80234 * 14 13 12 31 31 H 1.08998 * 109.45482 * 60.83042 * 14 13 12 32 32 H 1.08997 * 109.46952 * 315.79714 * 16 15 14 33 33 H 1.08998 * 109.46949 * 195.80200 * 16 15 14 34 34 H 1.09010 * 109.46879 * 305.02639 * 17 16 15 35 35 H 1.08997 * 109.47574 * 185.02921 * 17 16 15 36 36 H 0.96693 * 113.99952 * 180.02562 * 18 17 16 37 37 H 1.08992 * 109.46256 * 58.27426 * 19 15 14 38 38 H 1.08998 * 109.46147 * 178.24590 * 19 15 14 39 39 H 1.08999 * 109.50205 * 299.23166 * 20 19 15 40 40 H 1.09007 * 109.49985 * 179.12092 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0747 1.5111 2.0488 6 6 2.0277 3.3491 1.5289 7 7 2.7128 4.0016 0.6153 8 14 1.5840 4.1864 3.1387 9 1 2.6609 3.9492 4.1333 10 1 1.4322 5.6462 2.9120 11 1 0.3061 3.6295 3.6505 12 6 1.9955 -0.7659 -1.1376 13 6 1.5266 -2.2201 -1.0364 14 6 2.0284 -2.9988 -2.2544 15 7 1.5065 -2.3817 -3.4805 16 6 1.8535 -3.1829 -4.6619 17 6 0.9526 -4.4179 -4.7233 18 8 -0.4016 -4.0100 -4.9283 19 6 1.9821 -0.9998 -3.6234 20 6 1.4789 -0.1615 -2.4461 21 1 -0.3633 -1.0253 0.0709 22 1 -0.3633 0.5739 0.8525 23 1 -0.3633 0.4512 -0.9233 24 1 3.0798 1.3445 -0.1084 25 1 1.5611 1.9274 -0.8309 26 1 2.9874 4.9177 0.7773 27 1 3.0849 -0.7328 -1.1262 28 1 0.4374 -2.2502 -1.0086 29 1 1.9269 -2.6689 -0.1273 30 1 1.6843 -4.0312 -2.1924 31 1 3.1181 -2.9799 -2.2737 32 1 2.8954 -3.4961 -4.5952 33 1 1.7110 -2.5841 -5.5615 34 1 1.0279 -4.9696 -3.7862 35 1 1.2682 -5.0573 -5.5477 36 1 -1.0301 -4.7432 -4.9771 37 1 3.0719 -0.9904 -3.6364 38 1 1.6042 -0.5803 -4.5558 39 1 0.3890 -0.1591 -2.4407 40 1 1.8451 0.8605 -2.5444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357722989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:17 Heat of formation + Delta-G solvation = -41.664271 kcal Electronic energy + Delta-G solvation = -18307.559372 eV Core-core repulsion = 15543.219937 eV Total energy + Delta-G solvation = -2764.339435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.32079 -37.20233 -35.79988 -32.84853 -31.46528 -30.65114 -28.32232 -27.00764 -25.24854 -23.57270 -22.48551 -21.60418 -20.37832 -18.73558 -17.54001 -16.44695 -16.10024 -15.10917 -14.92588 -14.45694 -14.25846 -14.14243 -13.71203 -13.37017 -13.28517 -12.70984 -12.47065 -12.21893 -11.92223 -11.77617 -11.34073 -11.17708 -10.86369 -10.84852 -10.78070 -10.42814 -10.29977 -10.17553 -10.07610 -10.00942 -9.55167 -9.12749 -8.38142 -8.17366 -7.07356 -5.98068 -3.98834 3.35148 3.40759 3.44775 3.91840 4.18487 4.46366 4.91753 4.95055 5.08872 5.10132 5.26335 5.36380 5.38566 5.39609 5.48285 5.58647 5.65616 5.75394 5.84544 5.95270 6.05584 6.07230 6.25403 6.36892 6.42162 6.48256 6.63314 6.82130 6.92127 7.17837 7.24273 7.38683 7.45323 7.58704 7.86519 8.16654 8.30059 8.64170 9.09251 9.65103 11.12836 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053913 B = 0.004616 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.231745 B = 6064.622315 C = 6218.416341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.535 5.535 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.085 3.915 13 C -0.107 4.107 14 C 0.057 3.943 15 N -0.529 5.529 16 C 0.053 3.947 17 C 0.083 3.917 18 O -0.558 6.558 19 C 0.064 3.936 20 C -0.150 4.150 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.016 0.984 24 H 0.026 0.974 25 H -0.006 1.006 26 H 0.260 0.740 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.371 0.629 37 H 0.029 0.971 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -15.924 -10.163 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.257 5.257 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.024 4.024 13 C -0.146 4.146 14 C -0.071 4.071 15 N -0.254 5.254 16 C -0.076 4.076 17 C 0.005 3.995 18 O -0.362 6.362 19 C -0.064 4.064 20 C -0.189 4.189 21 H 0.066 0.934 22 H 0.089 0.911 23 H 0.034 0.966 24 H 0.044 0.956 25 H 0.012 0.988 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.217 0.783 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.173 -15.344 -9.691 18.278 hybrid contribution 0.304 0.401 -0.048 0.505 sum -1.869 -14.943 -9.739 17.934 Atomic orbital electron populations 1.22273 0.89206 0.99593 1.00456 1.62334 1.06967 1.17739 1.38677 1.19710 0.95153 0.81900 0.96506 1.21201 1.34562 0.96892 1.01762 0.91928 1.24984 0.95384 0.97360 0.96925 1.69961 1.38594 1.11417 1.34017 0.86512 0.78842 0.78419 0.83717 1.20691 1.21368 1.19871 1.21692 0.98870 0.92990 0.88882 1.21649 1.01808 0.95032 0.96063 1.22142 0.96669 0.98053 0.90228 1.61869 1.60053 1.02011 1.01450 1.22116 0.95824 0.95022 0.94606 1.22169 0.83015 0.95634 0.98679 1.86629 1.17030 1.36604 1.95895 1.22038 0.96966 0.88108 0.99286 1.22288 1.02217 0.99211 0.95176 0.93443 0.91124 0.96570 0.95588 0.98847 0.93018 0.91348 0.91060 0.91176 0.91292 0.95225 0.93511 0.90377 0.93746 0.93911 0.78332 0.95278 0.91289 0.90939 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 8.64 60.07 0.52 1.20 16 2 N -0.53 -11.85 4.74 -236.18 -1.12 -12.97 16 3 C 0.19 5.11 4.17 -4.98 -0.02 5.09 16 4 C -0.51 -14.48 8.46 -34.44 -0.29 -14.77 16 5 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.09 1.58 2.29 -67.59 -0.15 1.43 16 13 C -0.11 -1.67 5.24 -26.65 -0.14 -1.81 16 14 C 0.06 0.76 5.29 -3.83 -0.02 0.74 16 15 N -0.53 -7.30 4.53 -234.68 -1.06 -8.36 16 16 C 0.05 0.58 5.39 -3.83 -0.02 0.56 16 17 C 0.08 0.79 7.24 37.16 0.27 1.06 16 18 O -0.56 -6.18 13.61 -35.23 -0.48 -6.66 16 19 C 0.06 0.95 5.43 -3.84 -0.02 0.93 16 20 C -0.15 -2.64 4.69 -26.65 -0.13 -2.77 16 21 H 0.05 0.85 6.28 -51.93 -0.33 0.52 16 22 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 23 H 0.02 0.33 6.23 -51.93 -0.32 0.00 16 24 H 0.03 0.74 8.00 -51.93 -0.42 0.33 16 25 H -0.01 -0.18 7.01 -51.93 -0.36 -0.54 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 28 H 0.07 1.15 6.32 -51.93 -0.33 0.83 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.80 6.65 -51.93 -0.35 0.46 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 33 H 0.08 0.88 7.79 -51.93 -0.40 0.47 16 34 H 0.04 0.40 6.70 -51.92 -0.35 0.05 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.37 2.34 9.12 45.56 0.42 2.75 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 39 H 0.07 1.34 6.27 -51.93 -0.33 1.02 16 40 H 0.07 1.40 6.90 -51.93 -0.36 1.04 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -31.88 305.30 -8.37 -40.25 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.92 Total: -0.55 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.10 Total: -6.88 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -1.45 Total: -47.72 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.48 Total: -6.66 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.88 -8.37 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357722989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.417 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds