Wall clock time and date at job start Sun Mar 29 2020 22:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99837 * 2 1 4 4 C 1.50697 * 109.47446 * 66.04777 * 3 2 1 5 5 H 1.08008 * 119.99360 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00458 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99897 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00202 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47004 * 89.99731 * 8 6 4 10 10 H 1.48500 * 109.47128 * 209.99992 * 8 6 4 11 11 H 1.48498 * 109.47347 * 329.99868 * 8 6 4 12 12 C 1.46897 * 110.99731 * 236.05058 * 2 1 3 13 13 C 1.53126 * 109.52417 * 298.95032 * 12 2 1 14 14 C 1.53032 * 109.28291 * 177.62809 * 13 12 2 15 15 N 1.46854 * 109.52047 * 300.82193 * 14 13 12 16 16 C 1.46899 * 110.99699 * 185.84170 * 15 14 13 17 17 C 1.52997 * 109.47584 * 75.80412 * 16 15 14 18 18 O 1.42904 * 109.47373 * 65.02283 * 17 16 15 19 19 C 1.46843 * 111.19951 * 61.74071 * 15 14 13 20 20 C 1.53038 * 109.52230 * 298.26018 * 19 15 14 21 21 H 1.09003 * 109.46818 * 183.95637 * 1 2 3 22 22 H 1.09001 * 109.46816 * 303.95042 * 1 2 3 23 23 H 1.08994 * 109.47092 * 63.95653 * 1 2 3 24 24 H 1.09002 * 109.47364 * 186.05218 * 3 2 1 25 25 H 1.09001 * 109.47333 * 306.04871 * 3 2 1 26 26 H 0.96994 * 120.00226 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.52478 * 178.82534 * 12 2 1 28 28 H 1.08998 * 109.50370 * 57.67993 * 13 12 2 29 29 H 1.09002 * 109.49955 * 297.56887 * 13 12 2 30 30 H 1.08994 * 109.46440 * 180.80234 * 14 13 12 31 31 H 1.08998 * 109.45482 * 60.83042 * 14 13 12 32 32 H 1.08997 * 109.46952 * 315.79714 * 16 15 14 33 33 H 1.08998 * 109.46949 * 195.80200 * 16 15 14 34 34 H 1.09010 * 109.46879 * 305.02639 * 17 16 15 35 35 H 1.08997 * 109.47574 * 185.02921 * 17 16 15 36 36 H 0.96693 * 113.99952 * 180.02562 * 18 17 16 37 37 H 1.08992 * 109.46256 * 58.27426 * 19 15 14 38 38 H 1.08998 * 109.46147 * 178.24590 * 19 15 14 39 39 H 1.08999 * 109.50205 * 299.23166 * 20 19 15 40 40 H 1.09007 * 109.49985 * 179.12092 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0747 1.5111 2.0488 6 6 2.0277 3.3491 1.5289 7 7 2.7128 4.0016 0.6153 8 14 1.5840 4.1864 3.1387 9 1 2.6609 3.9492 4.1333 10 1 1.4322 5.6462 2.9120 11 1 0.3061 3.6295 3.6505 12 6 1.9955 -0.7659 -1.1376 13 6 1.5266 -2.2201 -1.0364 14 6 2.0284 -2.9988 -2.2544 15 7 1.5065 -2.3817 -3.4805 16 6 1.8535 -3.1829 -4.6619 17 6 0.9526 -4.4179 -4.7233 18 8 -0.4016 -4.0100 -4.9283 19 6 1.9821 -0.9998 -3.6234 20 6 1.4789 -0.1615 -2.4461 21 1 -0.3633 -1.0253 0.0709 22 1 -0.3633 0.5739 0.8525 23 1 -0.3633 0.4512 -0.9233 24 1 3.0798 1.3445 -0.1084 25 1 1.5611 1.9274 -0.8309 26 1 2.9874 4.9177 0.7773 27 1 3.0849 -0.7328 -1.1262 28 1 0.4374 -2.2502 -1.0086 29 1 1.9269 -2.6689 -0.1273 30 1 1.6843 -4.0312 -2.1924 31 1 3.1181 -2.9799 -2.2737 32 1 2.8954 -3.4961 -4.5952 33 1 1.7110 -2.5841 -5.5615 34 1 1.0279 -4.9696 -3.7862 35 1 1.2682 -5.0573 -5.5477 36 1 -1.0301 -4.7432 -4.9771 37 1 3.0719 -0.9904 -3.6364 38 1 1.6042 -0.5803 -4.5558 39 1 0.3890 -0.1591 -2.4407 40 1 1.8451 0.8605 -2.5444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357722989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:16 Heat of formation + Delta-G solvation = -67.562073 kcal Electronic energy + Delta-G solvation = -18308.682385 eV Core-core repulsion = 15543.219937 eV Total energy + Delta-G solvation = -2765.462448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62412 -38.34551 -36.96691 -34.85473 -32.93385 -31.89611 -29.61984 -28.82185 -26.94602 -25.01617 -23.84853 -22.90536 -21.72510 -20.19878 -18.54689 -18.28537 -17.27193 -16.79807 -16.26851 -15.99981 -15.69761 -15.26976 -15.14024 -14.79719 -14.53071 -14.10142 -13.93483 -13.72469 -13.37240 -13.07011 -12.95546 -12.73106 -12.61429 -12.44853 -12.16831 -12.00659 -11.94513 -11.75599 -11.50016 -11.33356 -11.03503 -10.74778 -10.60122 -9.21535 -8.90379 -8.19908 -6.30289 1.40699 1.42521 1.53692 2.40580 2.90231 3.12150 3.34672 3.52308 3.84280 3.92406 4.08970 4.21638 4.29716 4.35311 4.45619 4.50402 4.56909 4.63630 4.66085 4.73623 4.74710 4.77534 4.88826 4.95876 5.04265 5.08572 5.09284 5.19713 5.26038 5.38345 5.43808 5.66170 6.06714 6.12116 6.20535 6.37848 6.68267 6.86701 7.07101 7.39510 8.91101 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053913 B = 0.004616 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.231745 B = 6064.622315 C = 6218.416341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.542 5.542 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.083 3.917 13 C -0.098 4.098 14 C 0.062 3.938 15 N -0.541 5.541 16 C 0.048 3.952 17 C 0.084 3.916 18 O -0.586 6.586 19 C 0.072 3.928 20 C -0.141 4.141 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.012 0.988 24 H -0.004 1.004 25 H -0.034 1.034 26 H 0.264 0.736 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.390 0.610 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 -17.791 -9.992 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.085 3.915 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.188 1.188 12 C -0.026 4.026 13 C -0.136 4.136 14 C -0.066 4.066 15 N -0.266 5.266 16 C -0.080 4.080 17 C 0.006 3.994 18 O -0.393 6.393 19 C -0.056 4.056 20 C -0.180 4.180 21 H 0.097 0.903 22 H 0.072 0.928 23 H 0.030 0.970 24 H 0.014 0.986 25 H -0.017 1.017 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.707 -17.254 -9.534 19.898 hybrid contribution 0.467 0.939 -0.161 1.061 sum -2.240 -16.316 -9.695 19.110 Atomic orbital electron populations 1.22232 0.87962 1.01169 0.99463 1.62258 1.08092 1.15194 1.40922 1.19314 0.93140 0.84140 0.94940 1.21517 1.34822 0.97589 1.02430 0.91937 1.25929 0.94995 0.98021 1.00752 1.70094 1.39458 1.11879 1.36201 0.85369 0.78991 0.77231 0.78941 1.19804 1.20733 1.18804 1.21790 0.98107 0.94708 0.88021 1.21568 1.01499 0.92663 0.97843 1.22122 0.96945 0.98682 0.88815 1.61857 1.60422 1.01543 1.02783 1.22259 0.97356 0.95340 0.93022 1.22224 0.82146 0.94881 1.00120 1.86570 1.18185 1.38563 1.96027 1.21885 0.97001 0.88877 0.97852 1.22125 1.01361 0.98189 0.96326 0.90326 0.92815 0.96962 0.98591 1.01661 0.92725 0.92640 0.91370 0.90618 0.88747 0.94718 0.91844 0.90827 0.93033 0.91326 0.76166 0.94985 0.90680 0.91855 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 8.64 127.69 1.10 2.73 16 2 N -0.54 -24.55 4.74 -901.13 -4.27 -28.83 16 3 C 0.21 11.71 4.17 85.56 0.36 12.07 16 4 C -0.53 -30.79 8.46 25.60 0.22 -30.57 16 5 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 6 C 0.00 0.05 5.46 84.65 0.46 0.51 16 7 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 8 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 12 C 0.08 3.11 2.29 45.00 0.10 3.21 16 13 C -0.10 -2.88 5.24 30.65 0.16 -2.72 16 14 C 0.06 1.49 5.29 86.32 0.46 1.94 16 15 N -0.54 -13.83 4.53 -896.41 -4.06 -17.90 16 16 C 0.05 0.93 5.39 86.30 0.47 1.40 16 17 C 0.08 1.32 7.24 71.98 0.52 1.84 16 18 O -0.59 -11.50 13.61 -148.98 -2.03 -13.53 16 19 C 0.07 2.11 5.43 86.33 0.47 2.57 16 20 C -0.14 -5.10 4.69 30.64 0.14 -4.96 16 21 H 0.08 2.71 6.28 -2.39 -0.01 2.69 16 22 H 0.05 2.36 6.76 -2.39 -0.02 2.34 16 23 H 0.01 0.50 6.23 -2.39 -0.01 0.48 16 24 H 0.00 -0.24 8.00 -2.39 -0.02 -0.26 16 25 H -0.03 -2.06 7.01 -2.39 -0.02 -2.07 16 26 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.06 2.21 8.03 -2.38 -0.02 2.19 16 28 H 0.07 2.06 6.32 -2.39 -0.02 2.05 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 1.83 6.65 -2.39 -0.02 1.81 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.04 8.00 -2.39 -0.02 1.02 16 33 H 0.07 1.50 7.79 -2.39 -0.02 1.48 16 34 H 0.05 0.73 6.70 -2.38 -0.02 0.72 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.39 3.94 9.12 -74.06 -0.68 3.26 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 2.08 7.93 -2.39 -0.02 2.06 16 39 H 0.06 2.39 6.27 -2.39 -0.01 2.38 16 40 H 0.04 1.70 6.90 -2.38 -0.02 1.68 16 Total: -1.00 -69.47 305.30 -3.26 -72.73 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.34 Total: 9.64 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 4.46 Total: -11.97 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -8.05 Total: -104.16 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -2.03 Total: -13.53 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -69.47 -3.26 -72.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357722989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.166 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds