Wall clock time and date at job start Sun Mar 29 2020 23:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29023 * 124.91372 * 2 1 4 4 C 1.31784 * 117.12236 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74680 * 180.02562 * 4 3 2 6 6 C 1.33639 * 114.50230 * 0.02562 * 4 3 2 7 7 C 1.50692 * 126.03962 * 180.02562 * 6 4 3 8 8 S 1.81395 * 109.47084 * 90.00032 * 7 6 4 9 9 C 1.81406 * 103.00107 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47041 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00174 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00020 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00209 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46901 * 90.00440 * 14 12 10 16 16 H 1.48500 * 109.47244 * 210.00123 * 14 12 10 17 17 H 1.48498 * 109.47168 * 330.00257 * 14 12 10 18 18 S 1.70979 * 124.91513 * 180.02562 * 2 1 3 19 19 H 1.08998 * 109.47086 * 90.02626 * 1 2 3 20 20 H 1.09006 * 109.46552 * 210.01924 * 1 2 3 21 21 H 1.08997 * 109.47102 * 330.01872 * 1 2 3 22 22 H 1.08990 * 109.47046 * 89.98073 * 5 4 3 23 23 H 1.09001 * 109.46722 * 209.97899 * 5 4 3 24 24 H 1.09004 * 109.46932 * 329.97719 * 5 4 3 25 25 H 1.08997 * 109.47504 * 210.00277 * 7 6 4 26 26 H 1.09000 * 109.47266 * 330.00453 * 7 6 4 27 27 H 1.08994 * 109.46872 * 300.00003 * 9 8 7 28 28 H 1.08994 * 109.46913 * 60.00440 * 9 8 7 29 29 H 0.96993 * 119.99955 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0012 6 6 3.9355 -0.4006 0.0004 7 6 5.3575 -0.8994 0.0015 8 16 5.9266 -1.1000 1.7121 9 6 7.6279 -1.6958 1.5090 10 6 8.2486 -1.9150 2.8646 11 1 7.6770 -1.7154 3.7590 12 6 9.5462 -2.3703 2.9632 13 7 10.2426 -2.6129 1.8742 14 14 10.3159 -2.6413 4.6436 15 1 10.0564 -4.0343 5.0880 16 1 11.7809 -2.4133 4.5596 17 1 9.7223 -1.6918 5.6189 18 16 2.4857 -1.4020 -0.0006 19 1 -0.3633 -0.0005 -1.0276 20 1 -0.3633 -0.8899 0.5142 21 1 -0.3633 0.8901 0.5135 22 1 4.7662 2.3008 1.0289 23 1 5.4436 1.7223 -0.5120 24 1 4.0909 2.8792 -0.5131 25 1 5.4063 -1.8592 -0.5126 26 1 5.9954 -0.1796 -0.5115 27 1 7.6202 -2.6357 0.9571 28 1 8.2087 -0.9558 0.9585 29 1 11.1556 -2.9328 1.9435 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010453.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:36 Heat of formation + Delta-G solvation = 2.640523 kcal Electronic energy + Delta-G solvation = -12561.812659 eV Core-core repulsion = 10315.515315 eV Total energy + Delta-G solvation = -2246.297344 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94912 -35.30819 -34.91762 -31.47684 -30.67495 -30.02824 -26.35071 -25.02746 -23.65863 -20.01833 -18.91177 -18.62802 -17.25152 -16.64209 -16.15905 -15.87853 -15.07616 -14.73731 -14.59070 -14.37214 -14.23055 -14.05281 -13.81301 -13.31480 -12.97147 -12.88140 -12.74751 -12.57091 -12.19290 -12.15932 -11.63486 -10.84487 -10.75839 -10.64718 -10.18000 -9.53061 -8.53646 -8.34579 -6.47819 -0.46945 0.30898 0.72497 1.01345 1.39633 1.40445 1.52835 1.80805 1.98364 2.35843 2.99990 3.11916 3.68865 3.85578 4.03816 4.31712 4.44681 4.58014 4.68411 4.74193 4.77688 4.92653 4.93406 4.97217 5.10998 5.34148 5.55490 5.86946 6.59140 6.71134 7.20206 8.77148 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.048942 B = 0.004795 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.964867 B = 5837.463975 C = 5989.292551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.048 3.952 3 N -0.497 5.497 4 C 0.073 3.927 5 C -0.077 4.077 6 C -0.229 4.229 7 C 0.001 3.999 8 S -0.301 6.301 9 C 0.093 3.907 10 C -0.536 4.536 11 H 0.060 0.940 12 C 0.016 3.984 13 N -0.924 5.924 14 Si 0.975 3.025 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.267 1.267 18 S 0.145 5.855 19 H 0.106 0.894 20 H 0.101 0.899 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.016 0.984 28 H 0.019 0.981 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.696 4.270 -5.718 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.230 4.230 3 N -0.213 5.213 4 C -0.062 4.062 5 C -0.136 4.136 6 C -0.351 4.351 7 C -0.148 4.148 8 S -0.073 6.073 9 C -0.055 4.055 10 C -0.575 4.575 11 H 0.078 0.922 12 C -0.185 4.185 13 N -0.562 5.562 14 Si 0.799 3.201 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.191 1.191 18 S 0.401 5.599 19 H 0.124 0.876 20 H 0.119 0.881 21 H 0.113 0.887 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.549 3.803 -4.860 18.602 hybrid contribution 2.091 0.165 -0.473 2.150 sum -15.458 3.968 -5.333 16.827 Atomic orbital electron populations 1.20662 0.82061 1.05449 1.05420 1.27753 1.03346 0.90645 1.01261 1.66243 1.04281 1.32574 1.18200 1.20450 0.90772 0.94398 1.00542 1.20409 0.95635 0.94225 1.03376 1.24959 0.98489 0.96494 1.15144 1.21465 0.92436 1.04327 0.96585 1.86754 1.20017 1.88370 1.12125 1.20764 0.87804 0.96888 1.00005 1.20960 0.98589 1.46276 0.91680 0.92160 1.25889 0.96928 0.94180 1.01519 1.70050 1.11008 1.45201 1.29985 0.85289 0.77508 0.78974 0.78361 1.19419 1.19926 1.19088 1.83819 0.96110 1.11645 1.68318 0.87597 0.88085 0.88731 0.90597 0.90296 0.89528 0.89214 0.87851 0.96579 0.96279 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.46 71.24 0.75 -0.31 15 2 C 0.05 1.15 7.39 88.52 0.65 1.81 15 3 N -0.50 -14.44 10.53 -179.39 -1.89 -16.33 15 4 C 0.07 2.23 6.74 41.52 0.28 2.51 15 5 C -0.08 -2.05 10.06 71.24 0.72 -1.34 15 6 C -0.23 -7.18 5.85 24.64 0.14 -7.04 15 7 C 0.00 0.05 6.16 71.23 0.44 0.49 15 8 S -0.30 -13.31 21.64 -56.49 -1.22 -14.53 15 9 C 0.09 4.93 5.70 71.24 0.41 5.34 15 10 C -0.54 -30.77 9.13 25.60 0.23 -30.53 15 11 H 0.06 3.46 7.71 -2.91 -0.02 3.44 15 12 C 0.02 0.89 5.46 84.65 0.46 1.35 15 13 N -0.92 -54.10 13.29 21.45 0.28 -53.81 15 14 Si 0.98 43.73 29.54 68.60 2.03 45.75 15 15 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 18 S 0.15 3.74 23.18 -56.49 -1.31 2.43 15 19 H 0.11 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.10 1.01 8.14 -2.38 -0.02 0.99 15 21 H 0.09 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 23 H 0.08 2.00 6.72 -2.39 -0.02 1.98 15 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 26 H 0.10 3.35 6.76 -2.39 -0.02 3.33 15 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 28 H 0.02 1.05 8.14 -2.39 -0.02 1.03 15 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 Total: -1.00 -65.38 281.07 3.11 -62.27 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 1.14 Total: 1.94 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 4.08 Total: -27.72 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -1.60 Total: -70.14 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -9.57 SS G_CDS: -2.53 Total: -12.10 kcal Total: -65.38 3.11 -62.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010453.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.913 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds