Wall clock time and date at job start Sun Mar 29 2020 22:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99886 * 2 1 4 4 H 1.48501 * 109.47100 * 269.99684 * 3 2 1 5 5 H 1.48496 * 109.47192 * 30.00119 * 3 2 1 6 6 H 1.48504 * 109.46980 * 149.99865 * 3 2 1 7 7 C 1.37877 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00150 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.46903 * 111.00177 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47578 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46862 * 305.00661 * 12 11 10 14 14 O 1.42905 * 109.46980 * 64.99788 * 12 11 10 15 15 C 1.52997 * 109.47482 * 185.00096 * 12 11 10 16 16 N 1.46899 * 109.47254 * 179.97438 * 15 12 11 17 17 C 1.46843 * 111.00049 * 294.21280 * 16 15 12 18 18 C 1.53043 * 109.52446 * 174.16274 * 17 16 15 19 19 C 1.53115 * 109.28035 * 59.17281 * 18 17 16 20 20 C 1.53119 * 109.16391 * 302.35079 * 19 18 17 21 21 C 1.46842 * 111.00041 * 169.99637 * 16 15 12 22 22 H 0.96996 * 120.00299 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46907 * 60.00221 * 9 7 2 24 24 H 1.08993 * 109.47205 * 300.00063 * 9 7 2 25 25 H 1.00906 * 110.99771 * 56.04989 * 10 9 7 26 26 H 1.09001 * 109.46871 * 59.99686 * 11 10 9 27 27 H 1.09004 * 109.46883 * 300.00718 * 11 10 9 28 28 H 0.96696 * 114.00036 * 60.00352 * 14 12 11 29 29 H 1.09002 * 109.47153 * 59.99783 * 15 12 11 30 30 H 1.09001 * 109.46832 * 299.99974 * 15 12 11 31 31 H 1.09004 * 109.46019 * 294.17499 * 17 16 15 32 32 H 1.08999 * 109.46883 * 54.14319 * 17 16 15 33 33 H 1.09007 * 109.49669 * 299.23395 * 18 17 16 34 34 H 1.08996 * 109.50102 * 179.12000 * 18 17 16 35 35 H 1.08996 * 109.52692 * 182.44132 * 19 18 17 36 36 H 1.09007 * 109.52268 * 62.25145 * 19 18 17 37 37 H 1.09002 * 109.50021 * 297.71564 * 20 19 18 38 38 H 1.09001 * 109.50518 * 177.59261 * 20 19 18 39 39 H 1.08998 * 109.46877 * 305.85973 * 21 16 15 40 40 H 1.09002 * 109.46302 * 65.82604 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 1 3.2119 -5.9178 -0.8406 14 8 3.2712 -6.0154 1.2222 15 6 1.8050 -7.3843 -0.1258 16 7 2.7891 -8.4750 -0.1258 17 6 3.6388 -8.4171 -1.3220 18 6 4.7407 -9.4741 -1.2182 19 6 4.1018 -10.8596 -1.0896 20 6 3.1844 -10.8783 0.1362 21 6 2.1277 -9.7806 -0.0068 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 2.8405 -3.5487 0.7820 26 1 0.8807 -4.9813 -0.8903 27 1 0.8801 -4.9817 0.8896 28 1 2.7272 -6.1214 2.0146 29 1 1.2398 -7.4054 -1.0576 30 1 1.1234 -7.5095 0.7155 31 1 3.0330 -8.6098 -2.2074 32 1 4.0904 -7.4281 -1.3993 33 1 5.3554 -9.2739 -0.3406 34 1 5.3618 -9.4413 -2.1134 35 1 4.8824 -11.6112 -0.9719 36 1 3.5183 -11.0762 -1.9845 37 1 3.7747 -10.7002 1.0351 38 1 2.6936 -11.8488 0.2087 39 1 1.4816 -9.7819 0.8710 40 1 1.5289 -9.9670 -0.8984 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564977279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:10 Heat of formation + Delta-G solvation = -88.336065 kcal Electronic energy + Delta-G solvation = -17656.628599 eV Core-core repulsion = 14890.265323 eV Total energy + Delta-G solvation = -2766.363276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26645 -38.51332 -36.35891 -34.41224 -34.33552 -31.78153 -30.88029 -28.53576 -26.09912 -24.26756 -23.87819 -23.04014 -22.06781 -20.58446 -18.72307 -17.52563 -17.16495 -16.76198 -16.58301 -15.91252 -15.85557 -15.33625 -15.04818 -14.78437 -14.67398 -14.30268 -14.06571 -13.67348 -13.36899 -13.28178 -12.92116 -12.66240 -12.63165 -12.55876 -12.11296 -12.07231 -11.89579 -11.60333 -11.44661 -11.28932 -11.19126 -10.70766 -10.67742 -9.21966 -9.13810 -8.24382 -6.35740 1.40860 1.42814 1.54441 2.39260 2.78947 3.08834 3.49043 3.63562 3.90036 3.93202 4.01605 4.11882 4.16356 4.24791 4.36476 4.45871 4.50170 4.61915 4.65574 4.68938 4.74929 4.87667 4.93433 5.01619 5.06037 5.09721 5.20088 5.23785 5.24524 5.31805 5.49503 5.59708 5.99495 6.10022 6.20170 6.42688 6.70153 6.86194 6.93896 7.35401 8.87302 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.058197 B = 0.003647 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.008672 B = 7675.056605 C = 7873.977470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.688 5.688 11 C 0.030 3.970 12 C 0.130 3.870 13 H 0.089 0.911 14 O -0.559 6.559 15 C 0.032 3.968 16 N -0.536 5.536 17 C 0.050 3.950 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.113 4.113 21 C 0.052 3.948 22 H 0.266 0.734 23 H 0.000 1.000 24 H -0.038 1.038 25 H 0.338 0.662 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.380 0.620 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 -22.103 -0.308 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.319 5.319 11 C -0.100 4.100 12 C 0.070 3.930 13 H 0.107 0.893 14 O -0.365 6.365 15 C -0.096 4.096 16 N -0.261 5.261 17 C -0.078 4.078 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.075 4.075 22 H 0.075 0.925 23 H 0.018 0.982 24 H -0.021 1.021 25 H 0.156 0.844 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.228 0.772 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.970 -21.857 -0.995 22.680 hybrid contribution -1.444 0.914 0.427 1.762 sum 4.526 -20.943 -0.568 21.434 Atomic orbital electron populations 1.70080 1.07789 1.28089 1.51453 1.25967 0.95835 1.03438 0.94462 0.85305 0.78510 0.77805 0.78514 1.19785 1.20484 1.18787 1.21552 0.93788 0.91537 1.50780 0.91938 1.19217 0.90619 0.88963 0.93181 1.60464 1.20308 1.01351 1.49752 1.22627 0.96291 0.90701 1.00391 1.21753 0.92495 0.90840 0.87942 0.89282 1.86570 1.38360 1.95768 1.15756 1.22679 0.93970 0.91133 1.01856 1.61820 1.21873 1.02628 1.39750 1.22165 0.95329 1.00032 0.90285 1.21558 0.97042 0.94336 1.02240 1.21582 0.99231 0.96715 0.98152 1.21573 0.97073 0.97783 0.98683 1.22176 0.96154 0.88504 1.00679 0.92530 0.98218 1.02052 0.84423 0.91548 0.95478 0.77244 0.93861 0.89388 0.95123 0.91732 0.92022 0.90728 0.90713 0.92111 0.91786 0.90048 0.90351 0.95108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.62 9.32 25.60 0.24 -31.38 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.47 5.44 85.56 0.47 11.93 16 10 N -0.69 -30.81 6.49 -517.94 -3.36 -34.17 16 11 C 0.03 1.07 5.36 86.30 0.46 1.53 16 12 C 0.13 3.72 3.08 30.59 0.09 3.82 16 13 H 0.09 2.83 6.43 -2.39 -0.02 2.82 16 14 O -0.56 -16.41 12.72 -148.98 -1.90 -18.31 16 15 C 0.03 0.74 4.62 86.30 0.40 1.14 16 16 N -0.54 -11.78 4.52 -896.37 -4.05 -15.83 16 17 C 0.05 1.08 5.29 86.33 0.46 1.54 16 18 C -0.11 -2.05 6.09 30.65 0.19 -1.87 16 19 C -0.12 -1.75 6.00 30.67 0.18 -1.57 16 20 C -0.11 -1.70 6.09 30.65 0.19 -1.51 16 21 C 0.05 0.93 5.46 86.33 0.47 1.40 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 24 H -0.04 -2.24 8.14 -2.39 -0.02 -2.26 16 25 H 0.34 14.88 8.28 -89.69 -0.74 14.14 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.38 8.76 9.05 -74.06 -0.67 8.09 16 29 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.09 1.81 7.99 -2.39 -0.02 1.79 16 31 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 1.61 6.21 -2.39 -0.01 1.59 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.28 8.02 -2.39 -0.02 1.26 16 40 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -66.16 318.02 -3.80 -69.96 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.41 Total: 22.60 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 3.61 Total: -14.44 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -7.13 Total: -106.83 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.90 Total: -18.31 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.16 -3.80 -69.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564977279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.373 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds