Wall clock time and date at job start Sun Mar 29 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00082 * 2 1 4 4 C 1.53005 * 109.46985 * 199.77757 * 3 2 1 5 5 H 1.08996 * 109.47108 * 300.96887 * 4 3 2 6 6 O 1.42898 * 109.47075 * 60.96699 * 4 3 2 7 7 C 1.52996 * 109.47170 * 180.96903 * 4 3 2 8 8 N 1.46894 * 109.47239 * 179.97438 * 7 4 3 9 9 C 1.46903 * 111.00515 * 179.97438 * 8 7 4 10 10 C 1.52993 * 109.47708 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47401 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00060 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00279 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99766 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00070 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47331 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47408 * 120.00092 * 15 13 11 18 18 H 1.48504 * 109.46987 * 240.00131 * 15 13 11 19 19 C 1.46900 * 110.99360 * 123.95153 * 2 1 3 20 20 C 1.53009 * 117.49551 * 124.79467 * 19 2 1 21 21 C 1.52995 * 117.50141 * 56.13691 * 19 2 1 22 22 H 1.09005 * 109.46749 * 64.62678 * 1 2 3 23 23 H 1.09000 * 109.47538 * 184.62440 * 1 2 3 24 24 H 1.09003 * 109.47343 * 304.62487 * 1 2 3 25 25 H 1.08998 * 109.47560 * 79.77592 * 3 2 1 26 26 H 1.08995 * 109.47118 * 319.77128 * 3 2 1 27 27 H 0.96697 * 114.00108 * 60.00104 * 6 4 3 28 28 H 1.09006 * 109.47065 * 299.99938 * 7 4 3 29 29 H 1.09002 * 109.47071 * 59.99632 * 7 4 3 30 30 H 1.00905 * 111.00216 * 303.95235 * 8 7 4 31 31 H 1.09007 * 109.46886 * 299.99985 * 9 8 7 32 32 H 1.09000 * 109.46878 * 59.99574 * 9 8 7 33 33 H 1.08998 * 109.47234 * 300.00489 * 10 9 8 34 34 H 1.09000 * 109.47294 * 59.99834 * 10 9 8 35 35 H 0.97000 * 119.99871 * 179.97438 * 14 13 11 36 36 H 1.08995 * 115.55634 * 270.45810 * 19 2 1 37 37 H 1.08991 * 117.49884 * 359.97438 * 20 19 2 38 38 H 1.08997 * 117.49548 * 145.01761 * 20 19 2 39 39 H 1.09001 * 117.50187 * 214.97377 * 21 19 2 40 40 H 1.08996 * 117.50165 * 359.96893 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4455 1.3610 -0.4881 5 1 4.0444 0.7268 0.1655 6 8 3.4954 0.8516 -1.8223 7 6 4.0016 2.7861 -0.4652 8 7 5.3939 2.7761 -0.9332 9 6 5.9619 4.1309 -0.9253 10 6 7.4097 4.0799 -1.4172 11 6 7.9920 5.4698 -1.4097 12 1 7.3899 6.3058 -1.0859 13 6 9.2940 5.6740 -1.8150 14 7 10.0275 4.6558 -2.2088 15 14 10.0161 7.3967 -1.8050 16 1 8.9931 8.3594 -1.3232 17 1 11.1952 7.4340 -0.9031 18 1 10.4337 7.7664 -3.1813 19 6 1.9953 -0.7660 1.1377 20 6 2.9715 -1.9039 0.8321 21 6 1.5424 -2.2204 1.2802 22 1 -0.3633 0.4404 -0.9286 23 1 -0.3634 -1.0243 0.0829 24 1 -0.3634 0.5839 0.8457 25 1 1.9554 1.7760 1.0113 26 1 1.3932 1.9917 -0.6637 27 1 2.9834 1.3679 -2.4598 28 1 3.4027 3.4204 -1.1189 29 1 3.9635 3.1747 0.5525 30 1 5.9561 2.1448 -0.3823 31 1 5.3768 4.7740 -1.5828 32 1 5.9369 4.5293 0.0889 33 1 7.9945 3.4369 -0.7595 34 1 7.4350 3.6813 -2.4314 35 1 10.9433 4.7995 -2.4943 36 1 2.1564 -0.1971 2.0533 37 1 3.2228 -2.0844 -0.2130 38 1 3.7744 -2.0837 1.5469 39 1 1.4059 -2.6084 2.2896 40 1 0.8536 -2.6088 0.5301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582602272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:14 Heat of formation + Delta-G solvation = -26.674849 kcal Electronic energy + Delta-G solvation = -17335.544838 eV Core-core repulsion = 14571.855393 eV Total energy + Delta-G solvation = -2763.689445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07225 -37.27307 -35.19699 -34.08662 -32.85314 -30.55367 -28.73962 -26.17245 -24.49139 -23.05681 -22.40698 -21.53302 -20.57258 -20.28212 -16.94725 -16.30887 -16.12474 -15.78451 -15.16241 -15.02055 -14.45649 -14.28437 -14.07908 -13.49137 -13.15826 -12.89359 -12.57065 -12.15533 -12.05641 -11.89321 -11.84055 -11.48696 -11.02059 -10.93743 -10.79933 -10.54154 -10.52797 -10.39530 -10.01591 -9.80029 -9.28168 -9.09657 -8.45946 -8.33248 -7.74746 -5.97414 -4.00100 3.32366 3.39510 3.43399 3.48750 3.60989 4.40464 4.52515 4.65616 4.74298 4.80129 4.96434 5.00397 5.10175 5.17225 5.31776 5.38110 5.38745 5.44082 5.48857 5.52308 5.54445 5.63947 5.82182 5.84746 6.08461 6.18927 6.34723 6.42000 6.78566 6.89725 7.00195 7.50753 7.75866 7.84772 7.95033 8.05146 8.12394 8.46111 9.07556 9.63482 11.14033 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.052195 B = 0.003413 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.320136 B = 8201.682125 C = 8429.671501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.504 5.504 3 C 0.026 3.974 4 C 0.121 3.879 5 H 0.093 0.907 6 O -0.533 6.533 7 C 0.026 3.974 8 N -0.680 5.680 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.892 5.892 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.002 3.998 20 C -0.158 4.158 21 C -0.178 4.178 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.023 0.977 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.367 0.633 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.337 0.663 31 H 0.057 0.943 32 H 0.012 0.988 33 H 0.013 0.987 34 H 0.026 0.974 35 H 0.260 0.740 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.278 -10.420 6.940 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.227 5.227 3 C -0.103 4.103 4 C 0.060 3.940 5 H 0.111 0.889 6 O -0.337 6.337 7 C -0.105 4.105 8 N -0.311 5.311 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.107 4.107 20 C -0.196 4.196 21 C -0.216 4.216 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.213 0.787 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.154 0.846 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.752 -11.102 6.057 22.618 hybrid contribution -0.069 2.038 1.565 2.570 sum -18.821 -9.064 7.621 22.236 Atomic orbital electron populations 1.22390 0.87294 1.01931 1.00583 1.61679 1.07105 1.13306 1.40600 1.22890 0.97834 0.88991 1.00544 1.21779 0.92925 0.93820 0.85426 0.88919 1.86617 1.74515 1.55458 1.17063 1.22627 0.92864 0.96756 0.98208 1.60457 1.00931 1.11144 1.58543 1.22173 0.99011 0.87126 0.97900 1.19065 0.88132 0.96793 0.97259 1.21218 0.97337 0.93559 1.43918 0.92772 1.25015 0.97198 0.96853 0.95366 1.69991 1.08739 1.30032 1.44391 0.86532 0.79046 0.84719 0.77657 1.19811 1.21043 1.20959 1.22489 1.05080 0.89737 0.93419 1.23106 0.92230 1.01032 1.03227 1.23066 0.99121 0.97030 1.02365 0.91339 0.91293 0.95871 0.93903 0.90482 0.78711 0.91281 0.95551 0.84593 0.92486 0.96928 0.96818 0.95533 0.93039 0.89577 0.87612 0.88875 0.88930 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.42 60.07 0.57 0.78 16 2 N -0.50 -5.18 4.72 -234.89 -1.11 -6.29 16 3 C 0.03 0.27 4.65 -3.82 -0.02 0.25 16 4 C 0.12 1.52 3.25 -26.73 -0.09 1.44 16 5 H 0.09 1.26 7.71 -51.93 -0.40 0.86 16 6 O -0.53 -7.62 13.09 -35.23 -0.46 -8.08 16 7 C 0.03 0.37 5.35 -3.83 -0.02 0.35 16 8 N -0.68 -12.52 6.37 -113.78 -0.72 -13.24 16 9 C 0.07 1.43 5.62 -3.83 -0.02 1.40 16 10 C 0.02 0.67 5.23 -27.89 -0.15 0.52 16 11 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.00 0.01 4.66 -67.71 -0.32 -0.30 16 20 C -0.16 -1.56 10.46 -26.69 -0.28 -1.84 16 21 C -0.18 -1.49 9.67 -26.70 -0.26 -1.75 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.53 6.62 -51.93 -0.34 0.18 16 24 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16 25 H 0.04 0.42 7.83 -51.93 -0.41 0.02 16 26 H 0.08 0.72 7.94 -51.93 -0.41 0.30 16 27 H 0.37 4.25 9.05 45.56 0.41 4.67 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.34 6.14 8.73 -39.29 -0.34 5.80 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 37 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.81 7.26 -51.93 -0.38 0.43 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -31.75 329.83 -9.07 -40.83 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.47 Total: 4.50 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.99 Total: -12.96 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -1.10 Total: -46.14 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.46 Total: -8.08 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.75 -9.07 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582602272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.151 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds