Wall clock time and date at job start Sun Mar 29 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00082 * 2 1 4 4 C 1.53005 * 109.46985 * 199.77757 * 3 2 1 5 5 H 1.08996 * 109.47108 * 300.96887 * 4 3 2 6 6 O 1.42898 * 109.47075 * 60.96699 * 4 3 2 7 7 C 1.52996 * 109.47170 * 180.96903 * 4 3 2 8 8 N 1.46894 * 109.47239 * 179.97438 * 7 4 3 9 9 C 1.46903 * 111.00515 * 179.97438 * 8 7 4 10 10 C 1.52993 * 109.47708 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47401 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00060 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00279 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99766 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00070 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47331 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47408 * 120.00092 * 15 13 11 18 18 H 1.48504 * 109.46987 * 240.00131 * 15 13 11 19 19 C 1.46900 * 110.99360 * 123.95153 * 2 1 3 20 20 C 1.53009 * 117.49551 * 124.79467 * 19 2 1 21 21 C 1.52995 * 117.50141 * 56.13691 * 19 2 1 22 22 H 1.09005 * 109.46749 * 64.62678 * 1 2 3 23 23 H 1.09000 * 109.47538 * 184.62440 * 1 2 3 24 24 H 1.09003 * 109.47343 * 304.62487 * 1 2 3 25 25 H 1.08998 * 109.47560 * 79.77592 * 3 2 1 26 26 H 1.08995 * 109.47118 * 319.77128 * 3 2 1 27 27 H 0.96697 * 114.00108 * 60.00104 * 6 4 3 28 28 H 1.09006 * 109.47065 * 299.99938 * 7 4 3 29 29 H 1.09002 * 109.47071 * 59.99632 * 7 4 3 30 30 H 1.00905 * 111.00216 * 303.95235 * 8 7 4 31 31 H 1.09007 * 109.46886 * 299.99985 * 9 8 7 32 32 H 1.09000 * 109.46878 * 59.99574 * 9 8 7 33 33 H 1.08998 * 109.47234 * 300.00489 * 10 9 8 34 34 H 1.09000 * 109.47294 * 59.99834 * 10 9 8 35 35 H 0.97000 * 119.99871 * 179.97438 * 14 13 11 36 36 H 1.08995 * 115.55634 * 270.45810 * 19 2 1 37 37 H 1.08991 * 117.49884 * 359.97438 * 20 19 2 38 38 H 1.08997 * 117.49548 * 145.01761 * 20 19 2 39 39 H 1.09001 * 117.50187 * 214.97377 * 21 19 2 40 40 H 1.08996 * 117.50165 * 359.96893 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4455 1.3610 -0.4881 5 1 4.0444 0.7268 0.1655 6 8 3.4954 0.8516 -1.8223 7 6 4.0016 2.7861 -0.4652 8 7 5.3939 2.7761 -0.9332 9 6 5.9619 4.1309 -0.9253 10 6 7.4097 4.0799 -1.4172 11 6 7.9920 5.4698 -1.4097 12 1 7.3899 6.3058 -1.0859 13 6 9.2940 5.6740 -1.8150 14 7 10.0275 4.6558 -2.2088 15 14 10.0161 7.3967 -1.8050 16 1 8.9931 8.3594 -1.3232 17 1 11.1952 7.4340 -0.9031 18 1 10.4337 7.7664 -3.1813 19 6 1.9953 -0.7660 1.1377 20 6 2.9715 -1.9039 0.8321 21 6 1.5424 -2.2204 1.2802 22 1 -0.3633 0.4404 -0.9286 23 1 -0.3634 -1.0243 0.0829 24 1 -0.3634 0.5839 0.8457 25 1 1.9554 1.7760 1.0113 26 1 1.3932 1.9917 -0.6637 27 1 2.9834 1.3679 -2.4598 28 1 3.4027 3.4204 -1.1189 29 1 3.9635 3.1747 0.5525 30 1 5.9561 2.1448 -0.3823 31 1 5.3768 4.7740 -1.5828 32 1 5.9369 4.5293 0.0889 33 1 7.9945 3.4369 -0.7595 34 1 7.4350 3.6813 -2.4314 35 1 10.9433 4.7995 -2.4943 36 1 2.1564 -0.1971 2.0533 37 1 3.2228 -2.0844 -0.2130 38 1 3.7744 -2.0837 1.5469 39 1 1.4059 -2.6084 2.2896 40 1 0.8536 -2.6088 0.5301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582602272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:14 Heat of formation + Delta-G solvation = -51.560186 kcal Electronic energy + Delta-G solvation = -17336.623947 eV Core-core repulsion = 14571.855393 eV Total energy + Delta-G solvation = -2764.768554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.92128 -38.33866 -36.72176 -34.92504 -34.84579 -32.08225 -30.16020 -27.37912 -25.89202 -24.39208 -23.12645 -22.73489 -22.21640 -21.18234 -18.53981 -17.83891 -17.18370 -16.82956 -16.44543 -16.19865 -15.90421 -15.51057 -15.32780 -14.70385 -14.37894 -14.08812 -13.80118 -13.71522 -13.37234 -12.88907 -12.80148 -12.74975 -12.73665 -12.41533 -12.20238 -11.97118 -11.80027 -11.49358 -11.31258 -11.27026 -11.11386 -10.66318 -10.57626 -9.25227 -9.18720 -8.20582 -6.32698 1.40204 1.41103 1.54378 2.40145 2.71099 2.89012 3.12629 3.32608 3.73219 3.89279 4.03003 4.08233 4.18203 4.26126 4.34085 4.35140 4.49102 4.52175 4.63142 4.65194 4.72400 4.74120 4.79182 4.85011 5.02299 5.05994 5.11500 5.17860 5.33098 5.43874 5.66249 5.77827 6.05549 6.13297 6.17074 6.28742 6.50546 6.85115 7.06839 7.36789 8.91937 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.052195 B = 0.003413 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.320136 B = 8201.682125 C = 8429.671501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.519 5.519 3 C 0.034 3.966 4 C 0.130 3.870 5 H 0.080 0.920 6 O -0.555 6.555 7 C 0.030 3.970 8 N -0.690 5.690 9 C 0.085 3.915 10 C 0.031 3.969 11 C -0.545 4.545 12 H 0.062 0.938 13 C -0.002 4.002 14 N -0.932 5.932 15 Si 0.970 3.030 16 H -0.260 1.260 17 H -0.277 1.277 18 H -0.278 1.278 19 C -0.006 4.006 20 C -0.172 4.172 21 C -0.161 4.161 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.029 0.971 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.378 0.622 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.335 0.665 31 H 0.059 0.941 32 H 0.018 0.982 33 H -0.011 1.011 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.750 -9.437 7.777 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.243 5.243 3 C -0.094 4.094 4 C 0.070 3.930 5 H 0.098 0.902 6 O -0.360 6.360 7 C -0.100 4.100 8 N -0.321 5.321 9 C -0.044 4.044 10 C -0.007 4.007 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.200 4.200 14 N -0.573 5.573 15 Si 0.794 3.206 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.115 4.115 20 C -0.210 4.210 21 C -0.198 4.198 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.225 0.775 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.007 0.993 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.258 -10.125 6.898 23.675 hybrid contribution 0.372 1.654 1.284 2.127 sum -19.886 -8.471 8.182 23.112 Atomic orbital electron populations 1.22421 0.85961 1.02539 1.01154 1.61621 1.08350 1.13230 1.41089 1.22747 0.96084 0.89494 1.01111 1.21669 0.94434 0.92209 0.84715 0.90194 1.86586 1.75111 1.56219 1.18075 1.22701 0.90220 0.98247 0.98874 1.60375 1.02965 1.09247 1.59498 1.21787 0.95803 0.89016 0.97802 1.18922 0.91363 0.95496 0.94885 1.21649 0.98024 0.94549 1.44084 0.92021 1.26027 0.97677 1.01615 0.94644 1.70130 1.09260 1.32718 1.45145 0.85330 0.78330 0.79022 0.77920 1.18433 1.20292 1.20333 1.22567 1.05242 0.90287 0.93420 1.23059 0.93449 1.02309 1.02183 1.23116 0.97626 0.95822 1.03234 0.90806 0.90737 0.95196 0.93110 0.89186 0.77484 0.90325 0.94344 0.84741 0.92250 0.96367 0.99254 0.98915 0.92720 0.89233 0.89763 0.88335 0.87190 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.42 127.69 1.20 1.59 16 2 N -0.52 -9.86 4.72 -897.04 -4.24 -14.10 16 3 C 0.03 0.64 4.65 86.31 0.40 1.04 16 4 C 0.13 3.14 3.25 30.59 0.10 3.24 16 5 H 0.08 2.14 7.71 -2.39 -0.02 2.12 16 6 O -0.55 -15.56 13.09 -148.98 -1.95 -17.51 16 7 C 0.03 0.80 5.35 86.30 0.46 1.26 16 8 N -0.69 -25.30 6.37 -513.89 -3.27 -28.57 16 9 C 0.08 3.65 5.62 86.30 0.49 4.13 16 10 C 0.03 1.70 5.23 29.84 0.16 1.85 16 11 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 12 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 13 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 14 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 15 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C -0.01 -0.12 4.66 44.92 0.21 0.09 16 20 C -0.17 -3.32 10.46 30.62 0.32 -3.00 16 21 C -0.16 -2.43 9.67 30.62 0.30 -2.13 16 22 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.07 0.99 6.62 -2.39 -0.02 0.97 16 24 H 0.03 0.39 8.13 -2.39 -0.02 0.38 16 25 H 0.05 0.88 7.83 -2.39 -0.02 0.86 16 26 H 0.09 1.44 7.94 -2.39 -0.02 1.42 16 27 H 0.38 8.42 9.05 -74.06 -0.67 7.75 16 28 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.34 12.39 8.73 -89.69 -0.78 11.61 16 31 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.09 1.57 7.89 -2.39 -0.02 1.55 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.47 7.26 -2.39 -0.02 1.45 16 Total: -1.00 -68.15 329.83 -3.27 -71.42 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.45 Total: 22.82 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 4.33 Total: -23.04 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -7.22 Total: -100.48 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.95 Total: -17.51 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.15 -3.27 -71.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582602272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.857 kcal (2) G-P(sol) polarization free energy of solvation -68.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds